From baldig@genome.ICS.UCI.EDU Sun Jul 21 11:52:54 2002 Date: Wed, 19 Jun 2002 19:05:35 -0700 From: Baldis Research Group To: eva_casp@maple.bioc.columbia.edu Subject: CMapPro, CMap23Dpro response to T0139 Query_name: T0139 Query_length: 83 Prediction: TGISRETSSDVALASHILTALREKQAPELSLSSQDLELVTKEDPKALAVALNWDIKKTET CCCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCHEECCCCHHHHHHHHCCCCCCHHH VQEACERELALRLQQTQSLHSLR HHHHHHHHHHHHHHHHHHHHCCC 1 2 0 8 0.983 1 3 0 8 0.982 2 3 0 8 0.988 2 4 0 8 0.995 2 5 0 8 0.255 3 4 0 8 0.993 3 5 0 8 0.990 3 6 0 8 0.317 4 5 0 8 0.993 4 6 0 8 0.994 4 7 0 8 0.327 5 6 0 8 0.995 5 7 0 8 0.993 5 8 0 8 0.460 6 7 0 8 0.994 6 8 0 8 0.995 6 9 0 8 0.509 6 10 0 8 0.606 6 11 0 8 0.416 7 8 0 8 0.992 7 9 0 8 0.992 7 10 0 8 0.946 7 11 0 8 0.956 8 9 0 8 0.992 8 10 0 8 0.994 8 11 0 8 0.994 8 12 0 8 0.988 9 10 0 8 0.992 9 11 0 8 0.992 9 12 0 8 0.990 9 13 0 8 0.989 10 11 0 8 0.993 10 12 0 8 0.990 10 13 0 8 0.992 10 14 0 8 0.991 11 12 0 8 0.996 11 13 0 8 0.998 11 14 0 8 0.994 11 15 0 8 0.959 12 13 0 8 0.996 12 14 0 8 0.996 12 15 0 8 0.991 12 16 0 8 0.985 13 14 0 8 0.998 13 15 0 8 0.995 13 16 0 8 0.992 13 17 0 8 0.998 14 15 0 8 0.995 14 16 0 8 0.995 14 17 0 8 0.997 14 18 0 8 0.998 15 16 0 8 0.990 15 17 0 8 0.995 15 18 0 8 0.988 15 19 0 8 0.966 16 17 0 8 0.994 16 18 0 8 0.995 16 19 0 8 0.984 16 20 0 8 0.978 17 18 0 8 0.998 17 19 0 8 0.992 17 20 0 8 0.997 17 21 0 8 0.998 18 19 0 8 0.995 18 20 0 8 0.998 18 21 0 8 0.997 18 22 0 8 0.993 19 20 0 8 0.992 19 21 0 8 0.996 19 22 0 8 0.990 19 23 0 8 0.981 20 21 0 8 0.998 20 22 0 8 0.995 20 23 0 8 0.990 20 24 0 8 0.972 20 25 0 8 0.253 21 22 0 8 0.996 21 23 0 8 0.995 21 24 0 8 0.995 21 25 0 8 0.888 21 26 0 8 0.706 22 23 0 8 0.993 22 24 0 8 0.995 22 25 0 8 0.939 22 26 0 8 0.612 23 24 0 8 0.995 23 25 0 8 0.996 23 26 0 8 0.509 24 25 0 8 0.994 24 26 0 8 0.994 24 27 0 8 0.294 25 26 0 8 0.996 25 27 0 8 0.994 26 27 0 8 0.993 26 28 0 8 0.996 26 29 0 8 0.474 27 28 0 8 0.992 27 29 0 8 0.982 28 29 0 8 0.994 28 30 0 8 0.980 29 30 0 8 0.996 29 31 0 8 0.995 29 36 0 8 0.405 29 38 0 8 0.422 29 39 0 8 0.457 30 31 0 8 0.988 30 32 0 8 0.994 30 33 0 8 0.505 30 34 0 8 0.270 30 37 0 8 0.281 30 38 0 8 0.424 31 32 0 8 0.994 31 33 0 8 0.982 31 34 0 8 0.675 31 35 0 8 0.326 31 36 0 8 0.279 32 33 0 8 0.997 32 34 0 8 0.988 32 35 0 8 0.597 32 36 0 8 0.299 33 34 0 8 0.991 33 35 0 8 0.989 33 36 0 8 0.346 34 35 0 8 0.992 34 36 0 8 0.996 34 37 0 8 0.320 35 36 0 8 0.996 35 37 0 8 0.989 36 37 0 8 0.994 36 38 0 8 0.993 36 39 0 8 0.369 37 38 0 8 0.992 37 39 0 8 0.985 38 39 0 8 0.995 38 40 0 8 0.980 39 40 0 8 0.994 39 41 0 8 0.994 39 42 0 8 0.352 39 43 0 8 0.349 39 47 0 8 0.262 40 41 0 8 0.993 40 42 0 8 0.995 40 43 0 8 0.485 41 42 0 8 0.996 41 43 0 8 0.996 41 44 0 8 0.370 42 43 0 8 0.994 42 44 0 8 0.993 42 45 0 8 0.303 42 46 0 8 0.584 42 47 0 8 0.367 43 44 0 8 0.989 43 45 0 8 0.997 43 46 0 8 0.984 43 47 0 8 0.969 44 45 0 8 0.990 44 46 0 8 0.991 44 47 0 8 0.993 44 48 0 8 0.981 45 46 0 8 0.991 45 47 0 8 0.993 45 48 0 8 0.994 45 49 0 8 0.927 46 47 0 8 0.995 46 48 0 8 0.995 46 49 0 8 0.989 46 50 0 8 0.980 47 48 0 8 0.998 47 49 0 8 0.997 47 50 0 8 0.997 47 51 0 8 0.990 48 49 0 8 0.996 48 50 0 8 0.997 48 51 0 8 0.998 48 52 0 8 0.934 48 53 0 8 0.287 49 50 0 8 0.996 49 51 0 8 0.994 49 52 0 8 0.992 49 53 0 8 0.787 50 51 0 8 0.998 50 52 0 8 0.995 50 53 0 8 0.885 50 54 0 8 0.396 50 55 0 8 0.340 51 52 0 8 0.997 51 53 0 8 0.997 51 54 0 8 0.524 51 55 0 8 0.574 52 53 0 8 0.987 52 54 0 8 0.993 52 55 0 8 0.422 53 54 0 8 0.992 53 55 0 8 0.994 53 56 0 8 0.420 54 55 0 8 0.996 54 56 0 8 0.995 54 57 0 8 0.316 55 56 0 8 0.996 55 57 0 8 0.995 55 58 0 8 0.462 55 59 0 8 0.299 55 60 0 8 0.252 55 61 0 8 0.365 56 57 0 8 0.997 56 58 0 8 0.996 56 59 0 8 0.632 56 60 0 8 0.700 56 61 0 8 0.429 57 58 0 8 0.994 57 59 0 8 0.997 57 60 0 8 0.985 57 61 0 8 0.965 58 59 0 8 0.993 58 60 0 8 0.987 58 61 0 8 0.994 58 62 0 8 0.986 59 60 0 8 0.992 59 61 0 8 0.995 59 62 0 8 0.991 59 63 0 8 0.986 60 61 0 8 0.995 60 62 0 8 0.989 60 63 0 8 0.983 60 64 0 8 0.993 61 62 0 8 0.995 61 63 0 8 0.994 61 64 0 8 0.995 61 65 0 8 0.915 62 63 0 8 0.994 62 64 0 8 0.996 62 65 0 8 0.951 62 66 0 8 0.898 63 64 0 8 0.996 63 65 0 8 0.988 63 66 0 8 0.976 63 67 0 8 0.873 64 65 0 8 0.998 64 66 0 8 0.996 64 67 0 8 0.994 64 68 0 8 0.949 65 66 0 8 0.996 65 67 0 8 0.997 65 68 0 8 0.991 65 69 0 8 0.997 66 67 0 8 0.996 66 68 0 8 0.989 66 69 0 8 0.993 66 70 0 8 0.991 67 68 0 8 0.991 67 69 0 8 0.994 67 70 0 8 0.990 67 71 0 8 0.984 68 69 0 8 0.995 68 70 0 8 0.990 68 71 0 8 0.986 68 72 0 8 0.989 69 70 0 8 0.995 69 71 0 8 0.994 69 72 0 8 0.995 69 73 0 8 0.998 70 71 0 8 0.993 70 72 0 8 0.992 70 73 0 8 0.994 70 74 0 8 0.987 71 72 0 8 0.992 71 73 0 8 0.994 71 74 0 8 0.989 71 75 0 8 0.988 72 73 0 8 0.994 72 74 0 8 0.986 72 75 0 8 0.990 72 76 0 8 0.947 73 74 0 8 0.995 73 75 0 8 0.996 73 76 0 8 0.993 73 77 0 8 0.996 74 75 0 8 0.996 74 76 0 8 0.992 74 77 0 8 0.993 74 78 0 8 0.958 75 76 0 8 0.992 75 77 0 8 0.993 75 78 0 8 0.979 75 79 0 8 0.986 76 77 0 8 0.991 76 78 0 8 0.984 76 79 0 8 0.987 76 80 0 8 0.888 77 78 0 8 0.987 77 79 0 8 0.989 77 80 0 8 0.981 77 81 0 8 0.948 77 82 0 8 0.297 78 79 0 8 0.984 78 80 0 8 0.987 78 81 0 8 0.983 78 82 0 8 0.706 79 80 0 8 0.989 79 81 0 8 0.993 79 82 0 8 0.891 79 83 0 8 0.392 80 81 0 8 0.993 80 82 0 8 0.991 80 83 0 8 0.475 81 82 0 8 0.984 81 83 0 8 0.981 82 83 0 8 0.988 REMARK 6 RANDOM_SEED = 1279000575 REMARK 6 FIRST_SEED = 1024538639 REMARK 6 TRIAL = 3 REMARK 6 OPTIONS = see current file's name REMARK 6 Reconstruction phase = Adaptation_3[500] REMARK 6 Missed Contacts = 20 REMARK 6 Spurious Contacts = 148 REMARK 6 Correct Contacts = 671 REMARK 6 Total non-self Contacts in reconstructed map = 819 REMARK 6 Total non-self Contacts in original map = 691 REMARK 6 Cindex0 = 148 REMARK 6 Cindex1 = 2.0241 REMARK 6 Cindex2 = 6.68602 REMARK 6 Cprecision = 0.819292 REMARK 6 Crecall = 0.971056 REMARK 6 Cf1 = 0.888742 REMARK 6 structure chosen = reconstructed REMARK 6 rms (reconstructed, native) = 0 REMARK 6 rms (mirrored_reconstructed, native) = 0 ATOM 1 CA THR 20.874 -5.882 -0.354 1.00 0.00 ATOM 2 CA GLY 18.670 -4.787 2.528 1.00 0.00 ATOM 3 CA ILE 15.952 -4.198 0.103 1.00 0.00 ATOM 4 CA SER 16.674 -1.829 -2.794 1.00 0.00 ATOM 5 CA ARG 16.134 0.905 -0.215 1.00 0.00 ATOM 6 CA GLU 14.847 2.734 2.787 1.00 0.00 ATOM 7 CA THR 12.594 -0.145 2.012 1.00 0.00 ATOM 8 CA SER 11.970 3.493 2.945 1.00 0.00 ATOM 9 CA SER 10.703 0.546 0.932 1.00 0.00 ATOM 10 CA ASP 8.537 -0.157 -2.126 1.00 0.00 ATOM 11 CA VAL 4.808 -0.590 -1.671 1.00 0.00 ATOM 12 CA ALA 5.191 2.081 0.992 1.00 0.00 ATOM 13 CA LEU 4.158 4.630 -1.652 1.00 0.00 ATOM 14 CA ALA 1.662 4.094 1.066 1.00 0.00 ATOM 15 CA SER 0.392 4.939 4.516 1.00 0.00 ATOM 16 CA HIS 0.869 7.046 1.363 1.00 0.00 ATOM 17 CA ILE -0.720 7.375 -2.125 1.00 0.00 ATOM 18 CA LEU -2.969 4.280 -1.554 1.00 0.00 ATOM 19 CA THR -4.133 4.945 1.994 1.00 0.00 ATOM 20 CA ALA -6.224 6.117 -0.859 1.00 0.00 ATOM 21 CA LEU -7.677 3.515 -3.155 1.00 0.00 ATOM 22 CA ARG -10.264 4.273 -0.431 1.00 0.00 ATOM 23 CA GLU -10.452 6.202 2.834 1.00 0.00 ATOM 24 CA LYS -11.658 9.365 1.282 1.00 0.00 ATOM 25 CA GLN -10.207 12.455 -0.387 1.00 0.00 ATOM 26 CA ALA -12.322 9.480 -1.619 1.00 0.00 ATOM 27 CA PRO -12.591 8.682 -5.321 1.00 0.00 ATOM 28 CA GLU -8.960 9.281 -6.134 1.00 0.00 ATOM 29 CA LEU -5.812 7.604 -7.530 1.00 0.00 ATOM 30 CA SER -7.883 9.212 -10.259 1.00 0.00 ATOM 31 CA LEU -8.712 11.891 -12.812 1.00 0.00 ATOM 32 CA SER -6.051 13.981 -14.443 1.00 0.00 ATOM 33 CA SER -4.928 17.629 -13.826 1.00 0.00 ATOM 34 CA GLN -4.151 14.553 -15.843 1.00 0.00 ATOM 35 CA ASP -1.653 11.727 -15.669 1.00 0.00 ATOM 36 CA LEU -0.904 11.676 -11.960 1.00 0.00 ATOM 37 CA GLU 1.047 11.193 -15.161 1.00 0.00 ATOM 38 CA LEU 1.570 8.204 -13.021 1.00 0.00 ATOM 39 CA VAL 1.292 5.145 -10.819 1.00 0.00 ATOM 40 CA THR 4.259 7.504 -10.738 1.00 0.00 ATOM 41 CA LYS 6.890 10.122 -11.084 1.00 0.00 ATOM 42 CA GLU 8.963 7.114 -11.937 1.00 0.00 ATOM 43 CA ASP 8.108 3.751 -13.557 1.00 0.00 ATOM 44 CA PRO 7.199 0.081 -14.374 1.00 0.00 ATOM 45 CA LYS 8.908 1.897 -11.518 1.00 0.00 ATOM 46 CA ALA 6.794 2.834 -8.533 1.00 0.00 ATOM 47 CA LEU 3.737 3.347 -6.480 1.00 0.00 ATOM 48 CA ALA 0.427 1.794 -5.466 1.00 0.00 ATOM 49 CA VAL 0.812 0.011 -8.779 1.00 0.00 ATOM 50 CA ALA -2.412 1.799 -8.472 1.00 0.00 ATOM 51 CA LEU 0.445 -0.030 -10.124 1.00 0.00 ATOM 52 CA ASN 0.110 -2.070 -13.274 1.00 0.00 ATOM 53 CA TRP 0.748 -5.863 -13.139 1.00 0.00 ATOM 54 CA ASP -1.628 -3.301 -14.724 1.00 0.00 ATOM 55 CA ILE -5.130 -1.998 -14.996 1.00 0.00 ATOM 56 CA LYS -3.520 -4.926 -16.725 1.00 0.00 ATOM 57 CA LYS -7.077 -4.219 -15.479 1.00 0.00 ATOM 58 CA THR -9.808 -3.925 -12.869 1.00 0.00 ATOM 59 CA GLU -7.737 -7.027 -13.473 1.00 0.00 ATOM 60 CA THR -4.172 -7.107 -12.224 1.00 0.00 ATOM 61 CA VAL -3.136 -4.292 -9.866 1.00 0.00 ATOM 62 CA GLN -3.614 -7.684 -8.239 1.00 0.00 ATOM 63 CA GLU -0.797 -6.686 -5.954 1.00 0.00 ATOM 64 CA ALA -1.126 -2.994 -5.267 1.00 0.00 ATOM 65 CA CYS -4.873 -2.545 -4.715 1.00 0.00 ATOM 66 CA GLU -6.802 -5.630 -3.538 1.00 0.00 ATOM 67 CA ARG -7.078 -8.545 -1.120 1.00 0.00 ATOM 68 CA GLU -4.668 -7.283 1.469 1.00 0.00 ATOM 69 CA LEU -3.272 -4.128 -0.240 1.00 0.00 ATOM 70 CA ALA -2.616 -7.217 1.880 1.00 0.00 ATOM 71 CA LEU -0.932 -10.036 3.731 1.00 0.00 ATOM 72 CA ARG 0.045 -6.358 3.923 1.00 0.00 ATOM 73 CA LEU 0.324 -2.606 3.355 1.00 0.00 ATOM 74 CA GLN 0.023 -4.209 6.691 1.00 0.00 ATOM 75 CA GLN -0.088 -5.849 10.098 1.00 0.00 ATOM 76 CA THR 0.727 -9.494 9.542 1.00 0.00 ATOM 77 CA GLN 3.946 -8.073 8.185 1.00 0.00 ATOM 78 CA SER 4.075 -9.203 11.848 1.00 0.00 ATOM 79 CA LEU 7.377 -9.660 10.024 1.00 0.00 ATOM 80 CA HIS 7.299 -6.455 11.986 1.00 0.00 ATOM 81 CA SER 6.525 -3.100 13.614 1.00 0.00 ATOM 82 CA LEU 9.336 -5.622 12.911 1.00 0.00 ATOM 83 CA ARG 10.782 -7.852 15.626 1.00 0.00