From baldig@genome.ICS.UCI.EDU Sun Jul 21 11:53:26 2002 Date: Thu, 20 Jun 2002 11:52:46 -0700 From: Baldis Research Group To: eva_casp@maple.bioc.columbia.edu Subject: CMapPro, CMap23Dpro response to T0140 Query_name: T0140 Query_length: 103 Prediction: MRGSHHHHHHGSRLQSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAGSSGAAVRGN CCCCCCCCCCCCCEECCCEEEEEEEEECCCCCEEECCCCCCCCEEEEEHHHHCCHHHHCC PQQGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWAQAEA CCCCCEEEEEEEEEECCCEEEECCCCCCEEEEECCCCCCEECC 1 2 0 8 0.987 1 3 0 8 0.980 1 4 0 8 0.402 2 3 0 8 0.990 2 4 0 8 0.981 2 5 0 8 0.452 2 6 0 8 0.259 3 4 0 8 0.993 3 5 0 8 0.975 3 6 0 8 0.559 4 5 0 8 0.984 4 6 0 8 0.991 4 7 0 8 0.588 5 6 0 8 0.996 5 7 0 8 0.956 5 8 0 8 0.756 5 9 0 8 0.377 5 10 0 8 0.274 6 7 0 8 0.996 6 8 0 8 0.958 6 9 0 8 0.835 6 10 0 8 0.462 7 8 0 8 0.993 7 9 0 8 0.965 7 10 0 8 0.750 7 11 0 8 0.358 8 9 0 8 0.998 8 10 0 8 0.958 8 11 0 8 0.667 8 12 0 8 0.432 8 13 0 8 0.252 9 10 0 8 0.998 9 11 0 8 0.987 9 12 0 8 0.652 9 13 0 8 0.422 10 11 0 8 0.993 10 12 0 8 0.950 10 13 0 8 0.533 11 12 0 8 0.991 11 13 0 8 0.987 12 13 0 8 0.995 12 14 0 8 0.982 13 14 0 8 0.986 13 15 0 8 0.980 14 15 0 8 0.997 14 16 0 8 0.987 14 19 0 8 0.571 14 20 0 8 0.438 14 21 0 8 0.352 14 22 0 8 0.279 15 16 0 8 0.988 15 17 0 8 0.989 15 18 0 8 0.561 15 19 0 8 0.685 15 20 0 8 0.350 16 17 0 8 0.992 16 18 0 8 0.994 16 19 0 8 0.414 17 18 0 8 0.992 17 19 0 8 0.984 18 19 0 8 0.983 18 20 0 8 0.982 19 20 0 8 0.993 19 21 0 8 0.986 19 48 0 8 0.278 19 73 0 8 0.288 19 74 0 8 0.369 19 75 0 8 0.345 20 21 0 8 0.993 20 22 0 8 0.991 20 73 0 8 0.302 20 74 0 8 0.309 21 22 0 8 0.997 21 23 0 8 0.990 21 47 0 8 0.259 21 71 0 8 0.288 21 72 0 8 0.293 21 73 0 8 0.332 21 74 0 8 0.313 22 23 0 8 0.998 22 24 0 8 0.991 22 71 0 8 0.388 22 72 0 8 0.320 22 73 0 8 0.272 22 92 0 8 0.267 22 93 0 8 0.291 23 24 0 8 0.998 23 25 0 8 0.926 23 35 0 8 0.293 23 36 0 8 0.260 23 44 0 8 0.286 23 46 0 8 0.266 23 71 0 8 0.309 23 72 0 8 0.294 23 73 0 8 0.280 23 91 0 8 0.305 23 93 0 8 0.260 24 25 0 8 0.995 24 26 0 8 0.909 24 35 0 8 0.312 25 26 0 8 0.967 25 27 0 8 0.959 25 33 0 8 0.291 25 34 0 8 0.499 25 35 0 8 0.473 25 36 0 8 0.261 25 44 0 8 0.301 25 45 0 8 0.257 25 46 0 8 0.254 25 67 0 8 0.291 25 68 0 8 0.325 25 69 0 8 0.280 25 90 0 8 0.330 25 91 0 8 0.337 26 27 0 8 0.990 26 28 0 8 0.991 26 32 0 8 0.359 26 33 0 8 0.543 26 34 0 8 0.668 26 35 0 8 0.511 26 44 0 8 0.300 26 45 0 8 0.277 26 67 0 8 0.325 26 68 0 8 0.272 26 89 0 8 0.251 26 90 0 8 0.319 26 91 0 8 0.262 27 28 0 8 0.989 27 29 0 8 0.987 27 30 0 8 0.317 27 32 0 8 0.437 27 33 0 8 0.587 27 34 0 8 0.449 28 29 0 8 0.996 28 30 0 8 0.996 28 31 0 8 0.693 28 32 0 8 0.799 28 33 0 8 0.433 29 30 0 8 0.994 29 31 0 8 0.994 29 32 0 8 0.777 29 33 0 8 0.273 30 31 0 8 0.993 30 32 0 8 0.991 30 33 0 8 0.275 31 32 0 8 0.992 31 33 0 8 0.984 32 33 0 8 0.994 32 34 0 8 0.991 32 47 0 8 0.269 32 48 0 8 0.288 33 34 0 8 0.995 33 35 0 8 0.987 33 45 0 8 0.379 33 46 0 8 0.463 33 47 0 8 0.395 33 48 0 8 0.351 34 35 0 8 0.995 34 36 0 8 0.987 34 44 0 8 0.481 34 45 0 8 0.602 34 46 0 8 0.599 34 47 0 8 0.461 34 48 0 8 0.371 34 92 0 8 0.258 35 36 0 8 0.994 35 37 0 8 0.990 35 43 0 8 0.309 35 44 0 8 0.670 35 45 0 8 0.646 35 46 0 8 0.563 35 47 0 8 0.330 35 79 0 8 0.251 35 90 0 8 0.279 36 37 0 8 0.997 36 38 0 8 0.997 36 39 0 8 0.461 36 40 0 8 0.299 36 41 0 8 0.277 36 42 0 8 0.307 36 43 0 8 0.323 36 44 0 8 0.513 36 45 0 8 0.407 36 46 0 8 0.281 37 38 0 8 0.996 37 39 0 8 0.996 37 40 0 8 0.585 37 41 0 8 0.466 37 42 0 8 0.431 37 43 0 8 0.365 37 44 0 8 0.415 37 45 0 8 0.266 38 39 0 8 0.995 38 40 0 8 0.996 38 41 0 8 0.559 38 42 0 8 0.346 39 40 0 8 0.995 39 41 0 8 0.996 39 42 0 8 0.479 40 41 0 8 0.995 40 42 0 8 0.994 40 43 0 8 0.348 41 42 0 8 0.995 41 43 0 8 0.992 42 43 0 8 0.992 42 44 0 8 0.989 43 44 0 8 0.982 43 45 0 8 0.927 44 45 0 8 0.997 44 46 0 8 0.996 44 74 0 8 0.279 44 75 0 8 0.262 44 92 0 8 0.260 44 93 0 8 0.296 45 46 0 8 0.997 45 47 0 8 0.990 45 91 0 8 0.325 45 92 0 8 0.312 45 93 0 8 0.263 46 47 0 8 0.997 46 48 0 8 0.995 46 80 0 8 0.251 46 90 0 8 0.288 46 91 0 8 0.347 46 92 0 8 0.255 47 48 0 8 0.995 47 49 0 8 0.993 47 50 0 8 0.255 47 67 0 8 0.310 47 90 0 8 0.305 48 49 0 8 0.996 48 50 0 8 0.996 48 51 0 8 0.898 48 52 0 8 0.784 48 67 0 8 0.270 48 89 0 8 0.260 49 50 0 8 0.987 49 51 0 8 0.986 49 52 0 8 0.969 49 53 0 8 0.890 49 54 0 8 0.296 50 51 0 8 0.995 50 52 0 8 0.994 50 53 0 8 0.994 50 54 0 8 0.902 50 55 0 8 0.645 51 52 0 8 0.989 51 53 0 8 0.993 51 54 0 8 0.863 51 55 0 8 0.558 52 53 0 8 0.992 52 54 0 8 0.990 52 55 0 8 0.596 52 56 0 8 0.288 53 54 0 8 0.995 53 55 0 8 0.996 53 56 0 8 0.660 53 57 0 8 0.612 54 55 0 8 0.996 54 56 0 8 0.997 54 57 0 8 0.964 54 58 0 8 0.908 55 56 0 8 0.998 55 57 0 8 0.998 55 58 0 8 0.988 55 59 0 8 0.948 56 57 0 8 0.998 56 58 0 8 0.996 56 59 0 8 0.994 56 60 0 8 0.927 56 61 0 8 0.601 57 58 0 8 0.996 57 59 0 8 0.996 57 60 0 8 0.959 57 61 0 8 0.831 57 62 0 8 0.391 57 67 0 8 0.288 58 59 0 8 0.995 58 60 0 8 0.996 58 61 0 8 0.676 59 60 0 8 0.997 59 61 0 8 0.993 59 62 0 8 0.302 60 61 0 8 0.993 60 62 0 8 0.995 60 63 0 8 0.268 61 62 0 8 0.993 61 63 0 8 0.994 61 64 0 8 0.443 61 65 0 8 0.311 62 63 0 8 0.992 62 64 0 8 0.992 62 65 0 8 0.498 63 64 0 8 0.994 63 65 0 8 0.992 64 65 0 8 0.990 64 66 0 8 0.972 65 66 0 8 0.976 65 67 0 8 0.970 66 67 0 8 0.993 66 68 0 8 0.986 67 68 0 8 0.993 67 69 0 8 0.989 68 69 0 8 0.992 68 70 0 8 0.994 69 70 0 8 0.994 69 71 0 8 0.993 70 71 0 8 0.997 70 72 0 8 0.976 71 72 0 8 0.996 71 73 0 8 0.993 71 82 0 8 0.275 72 73 0 8 0.995 72 74 0 8 0.978 72 82 0 8 0.269 73 74 0 8 0.993 73 75 0 8 0.975 73 80 0 8 0.329 73 81 0 8 0.349 73 82 0 8 0.328 74 75 0 8 0.992 74 76 0 8 0.976 74 78 0 8 0.269 74 79 0 8 0.441 74 80 0 8 0.419 74 81 0 8 0.367 75 76 0 8 0.989 75 77 0 8 0.966 75 78 0 8 0.794 75 79 0 8 0.594 75 80 0 8 0.359 76 77 0 8 0.995 76 78 0 8 0.985 76 79 0 8 0.374 77 78 0 8 0.996 77 79 0 8 0.987 78 79 0 8 0.993 78 80 0 8 0.979 79 80 0 8 0.997 79 81 0 8 0.993 79 90 0 8 0.268 79 91 0 8 0.265 79 92 0 8 0.304 79 93 0 8 0.297 80 81 0 8 0.997 80 82 0 8 0.980 80 90 0 8 0.406 80 91 0 8 0.369 80 92 0 8 0.356 81 82 0 8 0.996 81 83 0 8 0.994 81 89 0 8 0.346 81 90 0 8 0.496 81 91 0 8 0.467 81 92 0 8 0.293 82 83 0 8 0.995 82 84 0 8 0.993 82 85 0 8 0.366 82 86 0 8 0.315 82 87 0 8 0.313 82 89 0 8 0.458 82 90 0 8 0.433 82 91 0 8 0.266 83 84 0 8 0.997 83 85 0 8 0.996 83 86 0 8 0.606 83 87 0 8 0.599 83 88 0 8 0.295 83 89 0 8 0.290 83 90 0 8 0.305 84 85 0 8 0.998 84 86 0 8 0.994 84 87 0 8 0.738 84 88 0 8 0.276 85 86 0 8 0.998 85 87 0 8 0.994 85 88 0 8 0.436 86 87 0 8 0.997 86 88 0 8 0.995 86 89 0 8 0.389 87 88 0 8 0.995 87 89 0 8 0.991 88 89 0 8 0.991 88 90 0 8 0.983 89 90 0 8 0.995 89 91 0 8 0.983 90 91 0 8 0.998 90 92 0 8 0.995 91 92 0 8 0.997 91 93 0 8 0.997 92 93 0 8 0.994 92 94 0 8 0.986 93 94 0 8 0.995 93 95 0 8 0.990 93 96 0 8 0.618 93 97 0 8 0.373 93 98 0 8 0.339 94 95 0 8 0.996 94 96 0 8 0.995 94 97 0 8 0.698 94 98 0 8 0.378 95 96 0 8 0.995 95 97 0 8 0.996 95 98 0 8 0.337 96 97 0 8 0.997 96 98 0 8 0.990 96 99 0 8 0.390 97 98 0 8 0.993 97 99 0 8 0.995 98 99 0 8 0.990 98 100 0 8 0.983 99 100 0 8 0.995 99 101 0 8 0.993 99 102 0 8 0.268 100 101 0 8 0.994 100 102 0 8 0.989 100 103 0 8 0.312 101 102 0 8 0.981 101 103 0 8 0.991 102 103 0 8 0.989 REMARK 6 RANDOM_SEED = 557580287 REMARK 6 FIRST_SEED = 1024599041 REMARK 6 TRIAL = 2 REMARK 6 OPTIONS = see current file's name REMARK 6 Reconstruction phase = Adaptation_3[500] REMARK 6 Missed Contacts = 345 REMARK 6 Spurious Contacts = 407 REMARK 6 Correct Contacts = 1368 REMARK 6 Total non-self Contacts in reconstructed map = 1775 REMARK 6 Total non-self Contacts in original map = 1713 REMARK 6 Cindex0 = 407 REMARK 6 Cindex1 = 7.30097 REMARK 6 Cindex2 = 14.8586 REMARK 6 Cprecision = 0.770704 REMARK 6 Crecall = 0.798599 REMARK 6 Cf1 = 0.784404 REMARK 6 structure chosen = reconstructed REMARK 6 rms (reconstructed, native) = 0 REMARK 6 rms (mirrored_reconstructed, native) = 0 ATOM 1 CA MET 7.666 -7.955 7.319 1.00 0.00 ATOM 2 CA ARG 10.077 -6.032 5.116 1.00 0.00 ATOM 3 CA GLY 9.639 -2.844 7.095 1.00 0.00 ATOM 4 CA SER 8.319 0.168 8.991 1.00 0.00 ATOM 5 CA HIS 8.005 3.931 8.705 1.00 0.00 ATOM 6 CA HIS 5.472 3.263 5.977 1.00 0.00 ATOM 7 CA HIS 5.780 0.185 3.837 1.00 0.00 ATOM 8 CA HIS 4.562 3.722 4.458 1.00 0.00 ATOM 9 CA HIS 4.643 2.988 0.728 1.00 0.00 ATOM 10 CA HIS 1.131 4.549 1.099 1.00 0.00 ATOM 11 CA GLY 1.133 7.416 3.638 1.00 0.00 ATOM 12 CA SER -0.702 4.451 2.307 1.00 0.00 ATOM 13 CA ARG -3.282 2.330 4.180 1.00 0.00 ATOM 14 CA LEU -6.007 -0.096 5.127 1.00 0.00 ATOM 15 CA GLN -3.523 -2.838 5.195 1.00 0.00 ATOM 16 CA SER -2.289 -3.987 1.819 1.00 0.00 ATOM 17 CA GLY -3.601 -7.041 -0.095 1.00 0.00 ATOM 18 CA LYS -4.700 -8.593 3.179 1.00 0.00 ATOM 19 CA MET -4.233 -7.533 6.822 1.00 0.00 ATOM 20 CA THR -8.047 -7.294 6.453 1.00 0.00 ATOM 21 CA GLY -10.785 -6.389 8.988 1.00 0.00 ATOM 22 CA ILE -13.536 -7.875 6.954 1.00 0.00 ATOM 23 CA VAL -11.232 -6.496 9.651 1.00 0.00 ATOM 24 CA LYS -14.193 -8.683 10.335 1.00 0.00 ATOM 25 CA TRP -17.082 -6.350 9.545 1.00 0.00 ATOM 26 CA PHE -17.537 -10.117 9.114 1.00 0.00 ATOM 27 CA ASN -17.976 -6.352 8.592 1.00 0.00 ATOM 28 CA ALA -21.116 -7.138 6.453 1.00 0.00 ATOM 29 CA ASP -23.266 -4.317 7.754 1.00 0.00 ATOM 30 CA LYS -25.014 -1.826 10.017 1.00 0.00 ATOM 31 CA GLY -21.373 -0.875 10.443 1.00 0.00 ATOM 32 CA PHE -18.244 -2.314 11.931 1.00 0.00 ATOM 33 CA GLY -19.443 -2.871 15.482 1.00 0.00 ATOM 34 CA PHE -16.048 -2.659 17.151 1.00 0.00 ATOM 35 CA ILE -12.216 -2.021 17.851 1.00 0.00 ATOM 36 CA THR -12.552 -5.719 17.443 1.00 0.00 ATOM 37 CA PRO -12.529 -9.259 16.058 1.00 0.00 ATOM 38 CA ASP -15.175 -10.115 18.604 1.00 0.00 ATOM 39 CA ASP -16.634 -10.148 22.113 1.00 0.00 ATOM 40 CA GLY -18.927 -7.269 23.175 1.00 0.00 ATOM 41 CA SER -21.946 -6.616 20.972 1.00 0.00 ATOM 42 CA LYS -20.325 -9.027 18.436 1.00 0.00 ATOM 43 CA ASP -19.365 -8.600 14.750 1.00 0.00 ATOM 44 CA VAL -16.116 -6.639 14.204 1.00 0.00 ATOM 45 CA PHE -13.545 -4.221 12.918 1.00 0.00 ATOM 46 CA VAL -14.065 -0.522 13.464 1.00 0.00 ATOM 47 CA HIS -13.136 2.894 12.232 1.00 0.00 ATOM 48 CA PHE -10.761 2.222 9.258 1.00 0.00 ATOM 49 CA SER -12.414 4.362 12.003 1.00 0.00 ATOM 50 CA ALA -10.178 6.182 9.483 1.00 0.00 ATOM 51 CA GLY -12.143 9.449 9.262 1.00 0.00 ATOM 52 CA SER -10.285 11.944 11.317 1.00 0.00 ATOM 53 CA SER -6.623 12.583 12.187 1.00 0.00 ATOM 54 CA GLY -9.082 10.256 13.744 1.00 0.00 ATOM 55 CA ALA -9.189 6.536 14.905 1.00 0.00 ATOM 56 CA ALA -7.025 4.031 13.013 1.00 0.00 ATOM 57 CA VAL -9.104 5.559 15.851 1.00 0.00 ATOM 58 CA ARG -6.993 5.165 18.978 1.00 0.00 ATOM 59 CA GLY -4.433 7.596 20.375 1.00 0.00 ATOM 60 CA ASN -6.118 8.952 23.439 1.00 0.00 ATOM 61 CA PRO -2.407 8.463 22.916 1.00 0.00 ATOM 62 CA GLN 0.559 7.757 20.770 1.00 0.00 ATOM 63 CA GLN -0.929 5.150 23.050 1.00 0.00 ATOM 64 CA GLY -1.505 1.474 22.238 1.00 0.00 ATOM 65 CA ASP -4.590 -0.577 21.570 1.00 0.00 ATOM 66 CA ARG -5.988 -1.807 18.282 1.00 0.00 ATOM 67 CA VAL -8.226 0.848 16.676 1.00 0.00 ATOM 68 CA GLU -5.671 -2.021 16.966 1.00 0.00 ATOM 69 CA GLY -5.241 -1.407 13.225 1.00 0.00 ATOM 70 CA LYS -3.379 -3.701 10.805 1.00 0.00 ATOM 71 CA ILE -6.602 -2.559 9.062 1.00 0.00 ATOM 72 CA LYS -6.448 -5.952 10.755 1.00 0.00 ATOM 73 CA SER -7.032 -3.106 8.420 1.00 0.00 ATOM 74 CA ILE -9.997 -3.063 6.107 1.00 0.00 ATOM 75 CA THR -9.874 -1.172 2.822 1.00 0.00 ATOM 76 CA ASP -11.576 -4.409 1.791 1.00 0.00 ATOM 77 CA PHE -13.993 -7.321 1.896 1.00 0.00 ATOM 78 CA GLY -10.261 -6.492 1.811 1.00 0.00 ATOM 79 CA ILE -12.765 -9.300 2.148 1.00 0.00 ATOM 80 CA PHE -10.478 -11.131 4.611 1.00 0.00 ATOM 81 CA ILE -10.151 -11.226 8.386 1.00 0.00 ATOM 82 CA GLY -7.848 -11.884 5.400 1.00 0.00 ATOM 83 CA LEU -6.575 -11.393 8.972 1.00 0.00 ATOM 84 CA ASP -7.080 -14.078 11.631 1.00 0.00 ATOM 85 CA GLY -10.285 -16.061 11.350 1.00 0.00 ATOM 86 CA GLY -10.192 -12.932 13.327 1.00 0.00 ATOM 87 CA ILE -8.265 -9.577 13.469 1.00 0.00 ATOM 88 CA ASP -7.672 -10.052 17.189 1.00 0.00 ATOM 89 CA GLY -8.275 -6.721 15.507 1.00 0.00 ATOM 90 CA LEU -9.308 -3.350 14.346 1.00 0.00 ATOM 91 CA VAL -10.377 -1.725 11.120 1.00 0.00 ATOM 92 CA HIS -13.479 -1.892 8.914 1.00 0.00 ATOM 93 CA LEU -13.184 0.390 5.906 1.00 0.00 ATOM 94 CA SER -15.117 -2.793 5.717 1.00 0.00 ATOM 95 CA ASP -17.607 -3.095 3.035 1.00 0.00 ATOM 96 CA ILE -17.758 -2.014 6.618 1.00 0.00 ATOM 97 CA SER -17.200 1.369 8.287 1.00 0.00 ATOM 98 CA TRP -14.951 4.445 7.943 1.00 0.00 ATOM 99 CA ALA -18.160 2.769 7.043 1.00 0.00 ATOM 100 CA GLN -16.853 2.171 3.546 1.00 0.00 ATOM 101 CA ALA -14.706 1.158 0.526 1.00 0.00 ATOM 102 CA GLU -16.006 4.158 -1.365 1.00 0.00 ATOM 103 CA ALA -16.603 7.082 -3.829 1.00 0.00