From baldig@genome.ICS.UCI.EDU Fri Aug 23 15:44:49 2002 Date: Thu, 08 Aug 2002 22:43:00 -0700 From: Baldis Research Group To: eva_casp@maple.bioc.columbia.edu Subject: CMapPro, CMap23Dpro response to T0176 Query_name: T0176 Query_length: 100 Prediction: MDGVMSAVTVNDDGLVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLG CCCCCCCEEECCCCEEEEEEEECCCCCCCEEEECCCEEEEEEECCCCCCHHHHHHHHHHH KQFRVAKSQVVIEKGELGRHKQIKIINPQQIPPEVAALIN HHHCCCCCCEEEECCCCCCCEEEEECCCCCCCHHHHHHCC 1 2 0 8 0.990 1 3 0 8 0.987 1 4 0 8 0.601 1 5 0 8 0.594 2 3 0 8 0.990 2 4 0 8 0.994 2 5 0 8 0.492 3 4 0 8 0.995 3 5 0 8 0.979 4 5 0 8 0.996 4 6 0 8 0.992 4 7 0 8 0.479 5 6 0 8 0.998 5 7 0 8 0.994 5 8 0 8 0.285 6 7 0 8 0.998 6 8 0 8 0.990 6 18 0 8 0.261 6 19 0 8 0.260 7 8 0 8 0.996 7 9 0 8 0.983 7 17 0 8 0.341 7 18 0 8 0.363 7 19 0 8 0.319 8 9 0 8 0.995 8 10 0 8 0.995 8 15 0 8 0.261 8 16 0 8 0.590 8 17 0 8 0.586 8 18 0 8 0.495 8 19 0 8 0.458 8 20 0 8 0.312 9 10 0 8 0.993 9 11 0 8 0.981 9 15 0 8 0.499 9 16 0 8 0.515 9 17 0 8 0.418 10 11 0 8 0.988 10 12 0 8 0.993 10 13 0 8 0.607 10 14 0 8 0.846 10 15 0 8 0.746 10 16 0 8 0.687 10 17 0 8 0.318 11 12 0 8 0.990 11 13 0 8 0.996 11 14 0 8 0.789 11 15 0 8 0.471 12 13 0 8 0.996 12 14 0 8 0.991 12 15 0 8 0.332 13 14 0 8 0.996 13 15 0 8 0.985 14 15 0 8 0.993 14 16 0 8 0.980 15 16 0 8 0.997 15 17 0 8 0.995 15 33 0 8 0.377 15 42 0 8 0.252 15 43 0 8 0.257 15 85 0 8 0.276 16 17 0 8 0.998 16 18 0 8 0.992 16 32 0 8 0.294 16 33 0 8 0.383 16 41 0 8 0.287 16 42 0 8 0.325 16 43 0 8 0.253 16 85 0 8 0.313 17 18 0 8 0.997 17 19 0 8 0.997 17 31 0 8 0.265 17 32 0 8 0.295 17 33 0 8 0.381 17 40 0 8 0.278 17 41 0 8 0.352 17 42 0 8 0.349 17 83 0 8 0.330 17 85 0 8 0.275 18 19 0 8 0.998 18 20 0 8 0.996 18 30 0 8 0.254 18 31 0 8 0.284 18 32 0 8 0.319 18 33 0 8 0.311 18 41 0 8 0.303 18 83 0 8 0.351 19 20 0 8 0.997 19 21 0 8 0.994 19 30 0 8 0.326 19 31 0 8 0.360 19 32 0 8 0.310 19 33 0 8 0.346 19 38 0 8 0.263 19 40 0 8 0.310 19 82 0 8 0.273 19 83 0 8 0.352 20 21 0 8 0.997 20 22 0 8 0.963 20 30 0 8 0.386 20 31 0 8 0.454 20 32 0 8 0.357 20 33 0 8 0.296 20 38 0 8 0.311 20 39 0 8 0.268 20 40 0 8 0.265 20 81 0 8 0.273 20 82 0 8 0.250 21 22 0 8 0.983 21 23 0 8 0.978 21 25 0 8 0.287 21 29 0 8 0.279 21 30 0 8 0.498 21 31 0 8 0.488 21 32 0 8 0.322 21 38 0 8 0.364 21 39 0 8 0.251 22 23 0 8 0.977 22 24 0 8 0.991 22 25 0 8 0.517 22 29 0 8 0.304 22 30 0 8 0.348 22 37 0 8 0.253 22 38 0 8 0.271 23 24 0 8 0.991 23 25 0 8 0.994 23 26 0 8 0.326 24 25 0 8 0.996 24 26 0 8 0.994 24 27 0 8 0.265 25 26 0 8 0.996 25 27 0 8 0.996 25 28 0 8 0.662 25 29 0 8 0.708 25 30 0 8 0.320 26 27 0 8 0.995 26 28 0 8 0.992 26 29 0 8 0.642 27 28 0 8 0.993 27 29 0 8 0.995 28 29 0 8 0.996 28 30 0 8 0.986 29 30 0 8 0.994 29 31 0 8 0.987 29 40 0 8 0.261 29 41 0 8 0.295 29 42 0 8 0.257 30 31 0 8 0.997 30 32 0 8 0.986 30 38 0 8 0.292 30 39 0 8 0.318 30 40 0 8 0.495 30 41 0 8 0.499 30 42 0 8 0.441 31 32 0 8 0.997 31 33 0 8 0.994 31 37 0 8 0.252 31 38 0 8 0.567 31 39 0 8 0.505 31 40 0 8 0.595 31 41 0 8 0.494 31 42 0 8 0.338 32 33 0 8 0.995 32 34 0 8 0.986 32 37 0 8 0.586 32 38 0 8 0.631 32 39 0 8 0.558 32 40 0 8 0.441 32 41 0 8 0.279 33 34 0 8 0.989 33 35 0 8 0.993 33 36 0 8 0.761 33 37 0 8 0.815 33 38 0 8 0.831 33 39 0 8 0.501 33 40 0 8 0.316 34 35 0 8 0.994 34 36 0 8 0.993 34 37 0 8 0.498 35 36 0 8 0.992 35 37 0 8 0.980 36 37 0 8 0.983 36 38 0 8 0.951 37 38 0 8 0.992 37 39 0 8 0.975 38 39 0 8 0.995 38 40 0 8 0.996 39 40 0 8 0.997 39 41 0 8 0.990 40 41 0 8 0.997 40 42 0 8 0.994 40 72 0 8 0.289 40 83 0 8 0.257 41 42 0 8 0.997 41 43 0 8 0.977 41 83 0 8 0.255 42 43 0 8 0.986 42 44 0 8 0.993 43 44 0 8 0.990 43 45 0 8 0.982 44 45 0 8 0.993 44 46 0 8 0.993 44 47 0 8 0.392 44 48 0 8 0.260 45 46 0 8 0.997 45 47 0 8 0.993 45 48 0 8 0.406 46 47 0 8 0.992 46 48 0 8 0.988 46 49 0 8 0.387 47 48 0 8 0.994 47 49 0 8 0.994 47 50 0 8 0.484 47 51 0 8 0.449 48 49 0 8 0.995 48 50 0 8 0.995 48 51 0 8 0.661 48 52 0 8 0.652 48 53 0 8 0.254 49 50 0 8 0.994 49 51 0 8 0.996 49 52 0 8 0.972 49 53 0 8 0.939 50 51 0 8 0.996 50 52 0 8 0.989 50 53 0 8 0.994 50 54 0 8 0.988 51 52 0 8 0.995 51 53 0 8 0.995 51 54 0 8 0.994 51 55 0 8 0.998 52 53 0 8 0.990 52 54 0 8 0.992 52 55 0 8 0.993 52 56 0 8 0.994 53 54 0 8 0.991 53 55 0 8 0.994 53 56 0 8 0.992 53 57 0 8 0.986 54 55 0 8 0.995 54 56 0 8 0.996 54 57 0 8 0.992 54 58 0 8 0.993 55 56 0 8 0.998 55 57 0 8 0.995 55 58 0 8 0.998 55 59 0 8 0.998 56 57 0 8 0.996 56 58 0 8 0.998 56 59 0 8 0.998 56 60 0 8 0.996 57 58 0 8 0.995 57 59 0 8 0.996 57 60 0 8 0.993 57 61 0 8 0.991 58 59 0 8 0.998 58 60 0 8 0.995 58 61 0 8 0.994 58 62 0 8 0.995 59 60 0 8 0.996 59 61 0 8 0.995 59 62 0 8 0.997 59 63 0 8 0.997 60 61 0 8 0.993 60 62 0 8 0.991 60 63 0 8 0.994 60 64 0 8 0.955 60 65 0 8 0.395 61 62 0 8 0.990 61 63 0 8 0.992 61 64 0 8 0.991 61 65 0 8 0.901 61 66 0 8 0.312 62 63 0 8 0.995 62 64 0 8 0.994 62 65 0 8 0.901 62 66 0 8 0.308 63 64 0 8 0.996 63 65 0 8 0.998 63 66 0 8 0.663 64 65 0 8 0.996 64 66 0 8 0.996 65 66 0 8 0.997 65 67 0 8 0.994 65 68 0 8 0.536 66 67 0 8 0.996 66 68 0 8 0.996 66 69 0 8 0.541 66 70 0 8 0.334 67 68 0 8 0.997 67 69 0 8 0.992 68 69 0 8 0.995 68 70 0 8 0.993 68 85 0 8 0.343 68 86 0 8 0.341 69 70 0 8 0.986 69 71 0 8 0.985 69 85 0 8 0.301 70 71 0 8 0.997 70 72 0 8 0.994 70 82 0 8 0.298 70 83 0 8 0.535 70 84 0 8 0.601 70 85 0 8 0.589 70 86 0 8 0.305 71 72 0 8 0.997 71 73 0 8 0.982 71 81 0 8 0.352 71 82 0 8 0.562 71 83 0 8 0.713 71 84 0 8 0.602 71 85 0 8 0.459 72 73 0 8 0.994 72 74 0 8 0.984 72 80 0 8 0.327 72 81 0 8 0.655 72 82 0 8 0.705 72 83 0 8 0.749 72 84 0 8 0.488 72 85 0 8 0.338 73 74 0 8 0.984 73 75 0 8 0.985 73 76 0 8 0.487 73 77 0 8 0.302 73 80 0 8 0.391 73 81 0 8 0.702 73 82 0 8 0.636 73 83 0 8 0.437 74 75 0 8 0.987 74 76 0 8 0.993 74 77 0 8 0.533 74 78 0 8 0.279 74 79 0 8 0.265 74 80 0 8 0.251 74 81 0 8 0.392 74 82 0 8 0.267 75 76 0 8 0.993 75 77 0 8 0.993 75 78 0 8 0.436 76 77 0 8 0.994 76 78 0 8 0.993 76 79 0 8 0.491 76 80 0 8 0.324 77 78 0 8 0.991 77 79 0 8 0.993 77 80 0 8 0.530 78 79 0 8 0.993 78 80 0 8 0.994 79 80 0 8 0.987 79 81 0 8 0.978 80 81 0 8 0.984 80 82 0 8 0.977 81 82 0 8 0.994 81 83 0 8 0.990 82 83 0 8 0.997 82 84 0 8 0.984 83 84 0 8 0.997 83 85 0 8 0.995 84 85 0 8 0.994 84 86 0 8 0.975 85 86 0 8 0.994 85 87 0 8 0.981 85 91 0 8 0.258 86 87 0 8 0.995 86 88 0 8 0.995 86 89 0 8 0.404 86 90 0 8 0.413 86 91 0 8 0.449 87 88 0 8 0.989 87 89 0 8 0.994 87 90 0 8 0.566 87 91 0 8 0.376 88 89 0 8 0.993 88 90 0 8 0.991 88 91 0 8 0.517 89 90 0 8 0.996 89 91 0 8 0.994 90 91 0 8 0.997 90 92 0 8 0.989 91 92 0 8 0.994 91 93 0 8 0.994 91 94 0 8 0.467 91 95 0 8 0.910 91 96 0 8 0.678 92 93 0 8 0.994 92 94 0 8 0.996 92 95 0 8 0.978 92 96 0 8 0.975 93 94 0 8 0.991 93 95 0 8 0.993 93 96 0 8 0.993 93 97 0 8 0.981 94 95 0 8 0.995 94 96 0 8 0.996 94 97 0 8 0.991 94 98 0 8 0.925 95 96 0 8 0.998 95 97 0 8 0.997 95 98 0 8 0.996 95 99 0 8 0.964 96 97 0 8 0.997 96 98 0 8 0.996 96 99 0 8 0.995 96 100 0 8 0.943 97 98 0 8 0.992 97 99 0 8 0.994 97 100 0 8 0.934 98 99 0 8 0.994 98 100 0 8 0.991 99 100 0 8 0.973 REMARK 6 RANDOM_SEED = 1710292991 REMARK 6 FIRST_SEED = 1028871665 REMARK 6 TRIAL = 2 REMARK 6 OPTIONS = see current file's name REMARK 6 Reconstruction phase = Adaptation_3[301] REMARK 6 Missed Contacts = 90.1982 REMARK 6 Spurious Contacts = 278.697 REMARK 6 Correct Contacts = 607.303 REMARK 6 Total non-self Contacts in reconstructed map = 886 REMARK 6 Total non-self Contacts in original map = 697.501 REMARK 6 Cindex0 = 278.697 REMARK 6 Cindex1 = 3.68895 REMARK 6 Cindex2 = 9.2629 REMARK 6 Cprecision = 0.685443 REMARK 6 Crecall = 0.870684 REMARK 6 Cf1 = 0.767038 REMARK 6 structure chosen = reconstructed REMARK 6 rms (reconstructed, native) = 0 REMARK 6 rms (mirrored_reconstructed, native) = 0 ATOM 1 CA MET 13.219 13.260 10.770 1.00 0.00 ATOM 2 CA ASP 15.068 14.883 7.887 1.00 0.00 ATOM 3 CA GLY 15.249 11.318 9.039 1.00 0.00 ATOM 4 CA VAL 13.477 11.838 5.697 1.00 0.00 ATOM 5 CA MET 12.113 8.328 6.050 1.00 0.00 ATOM 6 CA SER 12.991 10.136 2.866 1.00 0.00 ATOM 7 CA ALA 15.193 7.198 2.016 1.00 0.00 ATOM 8 CA VAL 17.977 4.859 1.104 1.00 0.00 ATOM 9 CA THR 21.587 3.879 1.665 1.00 0.00 ATOM 10 CA VAL 23.616 2.888 -1.435 1.00 0.00 ATOM 11 CA ASN 26.703 2.683 0.742 1.00 0.00 ATOM 12 CA ASP 29.441 5.224 1.308 1.00 0.00 ATOM 13 CA ASP 29.209 9.006 1.395 1.00 0.00 ATOM 14 CA GLY 26.758 8.129 -1.323 1.00 0.00 ATOM 15 CA LEU 22.935 7.947 -1.877 1.00 0.00 ATOM 16 CA VAL 19.535 6.745 -3.324 1.00 0.00 ATOM 17 CA LEU 15.967 5.522 -3.707 1.00 0.00 ATOM 18 CA ARG 12.135 5.654 -3.485 1.00 0.00 ATOM 19 CA LEU 9.904 7.525 -1.045 1.00 0.00 ATOM 20 CA TYR 10.165 7.145 -4.838 1.00 0.00 ATOM 21 CA ILE 6.363 7.750 -4.461 1.00 0.00 ATOM 22 CA GLN 3.410 7.009 -6.788 1.00 0.00 ATOM 23 CA PRO 0.187 6.661 -8.779 1.00 0.00 ATOM 24 CA LYS -0.696 9.458 -6.431 1.00 0.00 ATOM 25 CA ALA -0.506 8.458 -10.073 1.00 0.00 ATOM 26 CA SER -0.331 7.605 -13.762 1.00 0.00 ATOM 27 CA ARG 1.393 4.251 -14.198 1.00 0.00 ATOM 28 CA ASP 1.346 2.099 -11.055 1.00 0.00 ATOM 29 CA SER 4.421 4.334 -11.049 1.00 0.00 ATOM 30 CA ILE 8.095 3.981 -11.972 1.00 0.00 ATOM 31 CA VAL 8.363 2.227 -8.637 1.00 0.00 ATOM 32 CA GLY 8.872 2.039 -4.925 1.00 0.00 ATOM 33 CA LEU 8.435 2.290 -1.217 1.00 0.00 ATOM 34 CA HIS 5.811 -0.104 0.137 1.00 0.00 ATOM 35 CA GLY 5.773 -3.926 -0.037 1.00 0.00 ATOM 36 CA ASP 8.825 -5.365 1.623 1.00 0.00 ATOM 37 CA GLU 9.576 -3.412 -1.515 1.00 0.00 ATOM 38 CA VAL 12.358 -0.981 -2.259 1.00 0.00 ATOM 39 CA LYS 13.794 1.140 -5.104 1.00 0.00 ATOM 40 CA VAL 14.712 3.317 -8.064 1.00 0.00 ATOM 41 CA ALA 13.551 6.895 -8.518 1.00 0.00 ATOM 42 CA ILE 15.390 9.671 -6.604 1.00 0.00 ATOM 43 CA THR 14.193 12.566 -8.842 1.00 0.00 ATOM 44 CA ALA 14.416 16.407 -8.662 1.00 0.00 ATOM 45 CA PRO 12.092 19.395 -8.593 1.00 0.00 ATOM 46 CA PRO 15.098 20.866 -10.445 1.00 0.00 ATOM 47 CA VAL 11.372 20.359 -9.948 1.00 0.00 ATOM 48 CA ASP 11.756 21.415 -13.555 1.00 0.00 ATOM 49 CA GLY 8.636 19.768 -12.222 1.00 0.00 ATOM 50 CA GLN 8.676 18.319 -15.651 1.00 0.00 ATOM 51 CA ALA 8.096 16.842 -12.232 1.00 0.00 ATOM 52 CA ASN 10.204 15.659 -15.195 1.00 0.00 ATOM 53 CA SER 11.941 15.702 -18.517 1.00 0.00 ATOM 54 CA HIS 13.322 14.503 -15.178 1.00 0.00 ATOM 55 CA LEU 12.606 11.183 -16.760 1.00 0.00 ATOM 56 CA VAL 14.868 9.843 -14.035 1.00 0.00 ATOM 57 CA LYS 14.354 8.301 -17.535 1.00 0.00 ATOM 58 CA PHE 16.252 8.747 -14.241 1.00 0.00 ATOM 59 CA LEU 17.179 6.384 -17.002 1.00 0.00 ATOM 60 CA GLY 19.280 8.677 -19.228 1.00 0.00 ATOM 61 CA LYS 22.582 9.082 -17.359 1.00 0.00 ATOM 62 CA GLN 22.523 7.798 -20.954 1.00 0.00 ATOM 63 CA PHE 23.633 6.928 -17.484 1.00 0.00 ATOM 64 CA ARG 22.437 4.888 -20.447 1.00 0.00 ATOM 65 CA VAL 19.068 3.785 -21.798 1.00 0.00 ATOM 66 CA ALA 22.198 2.738 -20.023 1.00 0.00 ATOM 67 CA LYS 25.469 1.058 -19.158 1.00 0.00 ATOM 68 CA SER 24.508 1.842 -15.593 1.00 0.00 ATOM 69 CA GLN 20.935 1.746 -14.360 1.00 0.00 ATOM 70 CA VAL 18.410 1.869 -11.534 1.00 0.00 ATOM 71 CA VAL 19.865 -0.765 -9.305 1.00 0.00 ATOM 72 CA ILE 19.587 -3.872 -11.558 1.00 0.00 ATOM 73 CA GLU 22.327 -5.870 -9.838 1.00 0.00 ATOM 74 CA LYS 24.199 -9.148 -10.511 1.00 0.00 ATOM 75 CA GLY 27.885 -8.636 -9.683 1.00 0.00 ATOM 76 CA GLU 26.845 -8.357 -6.081 1.00 0.00 ATOM 77 CA LEU 25.063 -9.327 -2.874 1.00 0.00 ATOM 78 CA GLY 24.721 -12.392 -4.983 1.00 0.00 ATOM 79 CA ARG 22.620 -9.523 -3.611 1.00 0.00 ATOM 80 CA HIS 21.740 -11.854 -6.480 1.00 0.00 ATOM 81 CA LYS 19.024 -9.419 -7.620 1.00 0.00 ATOM 82 CA GLN 17.072 -6.282 -7.901 1.00 0.00 ATOM 83 CA ILE 15.413 -2.832 -8.136 1.00 0.00 ATOM 84 CA LYS 12.757 -4.462 -10.336 1.00 0.00 ATOM 85 CA ILE 11.398 -5.348 -13.804 1.00 0.00 ATOM 86 CA ILE 9.573 -8.108 -15.633 1.00 0.00 ATOM 87 CA ASN 7.875 -11.547 -15.257 1.00 0.00 ATOM 88 CA PRO 11.027 -13.480 -16.036 1.00 0.00 ATOM 89 CA GLN 7.610 -12.531 -17.464 1.00 0.00 ATOM 90 CA GLN 10.237 -11.029 -19.703 1.00 0.00 ATOM 91 CA ILE 12.375 -8.001 -20.237 1.00 0.00 ATOM 92 CA PRO 12.415 -11.058 -22.554 1.00 0.00 ATOM 93 CA PRO 11.306 -9.872 -26.063 1.00 0.00 ATOM 94 CA GLU 13.902 -7.341 -25.156 1.00 0.00 ATOM 95 CA VAL 10.200 -6.891 -25.256 1.00 0.00 ATOM 96 CA ALA 8.354 -4.041 -23.643 1.00 0.00 ATOM 97 CA ALA 7.125 -2.929 -27.056 1.00 0.00 ATOM 98 CA LEU 6.015 -5.275 -29.837 1.00 0.00 ATOM 99 CA ILE 8.909 -7.249 -31.267 1.00 0.00 ATOM 100 CA ASN 9.707 -4.454 -33.666 1.00 0.00