ProModII trace log for Batch.0
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ProModII: ProMod version 3.5 date Jul 19 1999 17:15
ProModII: SPDBV version 3.5
ProModII: Loop version 2.60
ProModII: LoopDB version 2.60
ProModII: Parameters version 3.5
ProModII: Topologies version 3.5
ProModII: Loading Project File: Batch.0
ProModII: N-terminal overhang trimmed for chain ' '. Start at residue: 7
ProModII: C-terminal overhang trimmed for chain ' '. End at residue: 385
ProModII: adding blocking groups
ProModII: Adding Missing Sidechains
ProModII: Trying Ligating with anchor residues ILE 76 and VAL 79
ProModII: Number of Ligations found: 1
ProModII: all loops are bad; continuing CSP with larger segment
ProModII: Trying Ligating with anchor residues GLN 75 and VAL 79
ProModII: Number of Ligations found: 32
ProModII: ACCEPTING loop 21: clash= 0 FF= 138.3 PP= 2.00
ProModII: Trying Ligating with anchor residues GLU 102 and THR 105
ProModII: Trying Ligating with anchor residues GLU 101 and THR 105
ProModII: Trying Ligating with anchor residues SER 100 and THR 105
ProModII: Trying Ligating with anchor residues ILE 99 and THR 105
ProModII: Number of Ligations found: 11
ProModII: all loops are bad; continuing CSP with larger segment
ProModII: Trying Ligating with anchor residues ILE 99 and GLN 106
ProModII: Number of Ligations found: 26
ProModII: ACCEPTING loop 11: clash= 0 FF= 629.6 PP= -8.00
ProModII: Trying Ligating with anchor residues LEU 362 and THR 365
ProModII: Number of Ligations found: 1
ProModII: all loops are bad; continuing CSP with larger segment
ProModII: Trying Ligating with anchor residues PRO 361 and THR 365
ProModII: Number of Ligations found: 73
ProModII: ACCEPTING loop 15: clash= 0 FF= -311.1 PP= -4.00
ProModII: Building CSP loop with anchor residues PRO 29 and MET 32
ProModII: Building CSP loop with anchor residues LEU 28 and MET 32
ProModII: Number of Ligations found: 73
ProModII: ACCEPTING loop 10: clash= 9 FF= 115.8 PP= -3.00
ProModII: Building CSP loop with anchor residues ASP 272 and VAL 275
ProModII: Number of Ligations found: 6
ProModII: ACCEPTING loop 3: clash= 3 FF= 93.7 PP= -6.00
ProModII: Building CSP loop with anchor residues LEU 319 and HIS 327
ProModII: Number of Ligations found: 500
ProModII: all loops are bad; continuing CSP with larger segment
ProModII: Building CSP loop with anchor residues LEU 319 and LEU 328
ProModII: Number of Ligations found: 500
ProModII: ACCEPTING loop 222: clash= 0 FF= 677.9 PP= -4.00
ProModII: Optimizing Sidechains
ProModII: Dumping Preliminary Model
ProModII: Adding Hydrogens
ProModII: Optimizing loops and OXT (nb = 32)
ProModII: Final Total Energy: -7735.599 KJ/mol
ProModII: Removing Hydrogens
ProModII: Fixing Atom Nomenclature
ProModII: Dumping Sequence Alignment