From - Wed Oct 31 17:11:38 2001 Return-Path: Received: from menta.sdi.uam.es (menta.sdi.uam.es [150.244.9.13]) by embnet.cnb.uam.es (8.10.1/8.10.1) with ESMTP id f9UDxOP538147 for ; Tue, 30 Oct 2001 15:59:24 +0200 (DST) Received: from frenadol.sdi.uam.es (frenadol.sdi.uam.es [150.244.9.89]) by menta.sdi.uam.es (8.9.3/8.9.3/UAM) with ESMTP id OAA08473 for ; Tue, 30 Oct 2001 14:59:21 +0100 (MET) Received: from junior.ncifcrf.gov (junior.NCIFCRF.GOV [129.43.3.26]) by frenadol.sdi.uam.es (8.11.3/8.11.3/UAM) with ESMTP id f9UDwcB07998 for ; Tue, 30 Oct 2001 14:58:38 +0100 Received: by junior.ncifcrf.gov (Postfix, from userid 3733) id A308F341BBCF; Tue, 30 Oct 2001 08:57:38 -0500 (EST) Reply-To: swissmod@ggr.co.uk From: swissmod@ggr.co.uk Sender: swissmod@ggr.co.uk To: pagomez@cnb.uam.es Subject: SwissModel_TraceLog_AAAa0Hg0n Message-Id: <20011030135738.A308F341BBCF@junior.ncifcrf.gov> Date: Tue, 30 Oct 2001 08:57:38 -0500 (EST) X-Mozilla-Status: 8001 X-Mozilla-Status2: 00000000 X-UIDL: e3df34fa91623d2a630afde1fddd6fbe AlignMaster output ============================================================ Length of target sequence: 260 residues Reading user-defined template list Extracting template sequences Running pair-wise alignments with target sequence Sequence identity of templates with target: 1DUBE.pdb: 99.6 % identity Looking for template groups Global alignment overview: Taget Sequence: |====================================================| 1DUBE.pdb |--------------------------------------------------- AlignMaster found 1 regions to model separately: 1: Using template(s) 1DUBE.pdb Creating Batch files for ProMod (if any): Batch.1: residues 1 - 260 of submitted sequence. Exiting AlignMaster ProModII trace log for Batch.1 ============================================================ ProModII: ProMod version 3.5 date Jul 19 1999 17:15 ProModII: SPDBV version 3.5 ProModII: Loop version 2.60 ProModII: LoopDB version 2.60 ProModII: Parameters version 3.5 ProModII: Topologies version 3.5 ProModII: Loading Template: 1DUBE.pdb ProModII: Loading Raw Sequence ProModII: Aligning Raw Sequence ProModII: Refining Raw Sequence Alignment ProModII: adding blocking groups ProModII: Adding Missing Sidechains ProModII: Optimizing Sidechains ProModII: Dumping Preliminary Model ProModII: Adding Hydrogens ProModII: Optimizing loops and OXT (nb = 1) ProModII: Final Total Energy: -11480.980 KJ/mol ProModII: Removing Hydrogens ProModII: Fixing Atom Nomenclature ProModII: Dumping Sequence Alignment ***