AlignMaster output
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Length of target sequence: 137 residues

Searching sequences of known 3D structures
Found 12UCE.pdb with P(N)=5.0e-12
Found 11AYZ.pdb with P(N)=1.2e-08
Found 11AAK.pdb with P(N)=5.3e-08
Found 12AAK.pdb with P(N)=5.3e-08
Found 11UCZ.pdb with P(N)=1.1e-07
Found 12UCZ.pdb with P(N)=1.1e-07
Found 11A3S.pdb with P(N)=1.0e-05

Extracting template sequences

Running pair-wise alignments with target sequence
Sequence identity of templates with target:

12UCE.pdb: 22.85 % identity
11AYZ.pdb: 27.8 % identity
11AAK.pdb: 17.15 % identity
12AAK.pdb: 17.15 % identity
11UCZ.pdb: 29.6 % identity
12UCZ.pdb: 29.6 % identity
11A3S.pdb: 22.5 % identity

Looking for template groups
Global alignment overview:

Taget Sequence: |====================================================================|
12UCE.pdb       |                  -------------------------------------------------
11AYZ.pdb       |                    ------------------------------------------------
11AAK.pdb       |               -----------------------------------------------------
12AAK.pdb       |               -----------------------------------------------------
11UCZ.pdb       |                 --------------------------                        
12UCZ.pdb       |                 --------------------------                        
11A3S.pdb       |                 --------------------------------------------------

AlignMaster found 1 regions to model separately:
        1: Using template(s)   11A3S.pdb 11AAK.pdb 11AYZ.pdb 11UCZ.pdb 12AAK.pdb 12UCE.pdb 12UCZ.pdb

12UCE.pdb has been rejected,  too low similarity with Target sequence (22.85 % identity.)
11AAK.pdb has been rejected,  too low similarity with Target sequence (17.15 % identity.)
12AAK.pdb has been rejected,  too low similarity with Target sequence (17.15 % identity.)
11A3S.pdb has been rejected,  too low similarity with Target sequence (22.5 % identity.)

Creating Batch files for ProMod (if any):
        Batch.1: residues 30 - 137 of submitted sequence.

Exiting AlignMaster


ProModII trace log for Batch.1
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ProModII: Loading Template: 11AYZ.pdb
ProModII: Loading Template: 11UCZ.pdb
ProModII: Loading Template: 12UCZ.pdb
ProModII: Loading Raw Sequence
ProModII: Iterative Template Fitting
ProModII: Iterative Template Fitting
ProModII: Generating Structural Alignment
ProModII: Aligning Raw Sequence
ProModII: Refining Raw Sequence Alignment
ProModII: Weighting Backbones
ProModII: Averaging Sidechains
ProModII: Adding Missing Sidechains
ProModII: Small Ligation (C-N < 3.0A) ignored;
ProModII: GROMOS will repair it at residue ASP 73
ProModII: Building CSP loop with anchor residues THR 60 and GLU 63
ProModII:   Number of Ligations found:  (1)
ProModII: all loops are bad; continuing CSP with larger segment
ProModII: Building CSP loop with anchor residues PRO 59 and GLU 63
ProModII:   Number of Ligations found:  (10)
ProModII: ACCEPTING loop    5: clash=   1 FF=         53.8 PP=-18.41
ProModII: Dumping Preliminary Model
ProModII: Dumping Sequence Alignment
ProModII: Done.

Gromos96 trace log for Batch.1
============================================================

Now running PROCS1 on file batch-procs0.dat ... Done.
Now running PROCS2 on file batch-procs1.dat ... Done.
Now running PROGMT on file batch-procs2.dat ... Done.
Now running PROGCH on file batch-procs2.dat ... Done.
Now running PROMD on file batch-progch.dat ... Done.
Now running PROMD on file batch-promd0.dat ... Done.
Detection of SS-Bonds within batch ...