BLASTP2 Result
of 
Bork Group's Advanced BLAST2 Search Service at 
EMBL.
back to BLAST2
BLASTP 2.0MP-WashU [16-Dec-1999] [irix6-r10k-L64 23:35:48 16-Dec-1999]
Copyright (C) 1996-1999 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-1999) http://blast.wustl.edu
Query= query_sequence
(110 letters)
Database: nrdb Release 12.Jan.2001
599,711 sequences; 189,376,495 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
WARNING: -hspmax 10 was exceeded with 5 of the database sequences, with as
many as 15 HSPs being found at one time.
Query sequence and locally-aligned HSPs from database sequences
0 30 60 90
| | | | |110
query_sequence | __________________________________________________
^ v swiss|P06127|CD5_H | __________________________________________________
^ v swiss|P13379|CD5_M | ________________________________________________
^ v sptremblnew|AAG149 | ________________________________________________
^ v swiss|P51882|CD5_R | ________________________________________________
^ v sptrembl|Q63098|Q6 | ________________________________________________
^ v swiss|P19238|CD5_B | ________________________________________________
^ v sptrembl|Q07452|Q0 | ________________________________________________
^ v sptrembl|Q92098|Q9 | ___________________________________________
^ v sptrembl|Q95218|Q9 | _______________________________________________
^ v sptrembl|Q95316|Q9 | ________________________________________
Alignments:
WARNING: Descriptions of 41 database sequences were not reported due to the
limiting value of parameter V = 50.
^ = swiss|P06127|CD5_HUMAN T-CELL SURFACE GLYCOPROTEIN CD5 PRECURSOR (LYMPHOCYTE
GLYCOPROTEIN T1/LEU-1) (LYMPHOCYTE ANTIGEN
CD5).//:sptremblnew|CAA61584|CAA61584 CD5
PROTEIN.//:trembl|X89405|HSIGHCVR1_1 gene: "CD5"; product: "CD5
protein"; Homo sapiens CD5 gene, exon 1 and joined CDS
//:trembl|X04391|HSTIR_1 Human mRNA for lymphocyte glycoprotein
T1/Leu-1 //:gp|X04391|37187 put. precursor polypeptide [Homo
sapiens]//:gp|X89405|10716548 CD5 protein [Homo sapiens]
Length = 495
0 100 200 300 400
| | | | | |495
swiss|P06127|CD5_HUMA | __________________________________________________
Local hits (HSPs) | ___________ __________
Score = 615 (221.5 bits), Expect = 8.1e-60, P = 8.1e-60
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 RLSWYDPDFQARLTRSNSKCQGQLEVYLKDGWHMVCSQSWGRSSKQWEDPSQASKVCQRL 60
RLSWYDPDFQARLTRSNSKCQGQLEVYLKDGWHMVCSQSWGRSSKQWEDPSQASKVCQRL
Sbjct: 25 RLSWYDPDFQARLTRSNSKCQGQLEVYLKDGWHMVCSQSWGRSSKQWEDPSQASKVCQRL 84
Query: 61 NCGVPLSLGPFLVTYTPQSSIICYGQLGSFSNCSHSRNDMCHSLGLTCLE 110
NCGVPLSLGPFLVTYTPQSSIICYGQLGSFSNCSHSRNDMCHSLGLTCLE
Sbjct: 85 NCGVPLSLGPFLVTYTPQSSIICYGQLGSFSNCSHSRNDMCHSLGLTCLE 134
Score = 112 (44.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 35/109 (32%), Positives = 47/109 (43%)
Query: 3 SWYDPDFQARLTRSNSKCQGQLEVYLKDGWHMVCSQSWGRSSKQWEDPSQASKVCQRLNC 62
S + P Q+RL +S C+G +EV W +C S RSS +WE+ VC+ C
Sbjct: 268 SGFQPKVQSRLVGGSSICEGTVEVRQGAQWAALCDSSSARSSLRWEE------VCREQQC 321
Query: 63 GVPLSLGPFLVTYTPQS-SIICYGQLGSFSNCSH--SRNDMCHSLGLTC 108
G S L P S + C Q S C RN C + +TC
Sbjct: 322 GSVNSYR-VLDAGDPTSRGLFCPHQ--KLSQCHELWERNSYCKKVFVTC 367
^ = swiss|P13379|CD5_MOUSE T-CELL SURFACE GLYCOPROTEIN CD5 PRECURSOR (LYMPHOCYTE
GLYCOPROTEIN LY- 1) (LYT-1) (LYMPHOCYTE ANTIGEN
CD5).//:trembl|M15177|MMLY1A_1 gene: "Ly-1"; product: "lymphocyte
differentiation antigen"; Mouse lymphocyte differentiation antigen
Ly-1 mRNA, complete cds. //:gp|M15177|198899 lymphocyte
differentiation antigen [Mus musculus]
Length = 494
0 100 200 300 400
| | | | | |494
swiss|P13379|CD5_MOUS | __________________________________________________
Local hits (HSPs) | __________ _________
Score = 254 (94.5 bits), Expect = 6.5e-21, P = 6.5e-21
Identities = 49/104 (47%), Positives = 64/104 (61%)
Query: 8 DFQARLTRSNSKCQGQLEVYLKDGWHMVCSQSWGRSSKQWEDPSQASKVCQRLNCGVPLS 67
D Q L+ SNSKCQGQ+E+ +++ W VCS SW S ++ QAS VC++L CG PL+
Sbjct: 31 DIQVMLSGSNSKCQGQVEIQMENKWKTVCSSSWRLSQDHSKNAQQASAVCKQLRCGDPLA 90
Query: 68 LGPFLVTYTPQSSIICYGQLGSFSNCSH-SRNDMCHSLGLTCLE 110
LGPF PQ+ + C G S SNC++ S D C L L CLE
Sbjct: 91 LGPFPSLNRPQNQVFCQGSPWSISNCNNTSSQDQCLPLSLICLE 134
Score = 94 (38.1 bits), Expect = 0.0014, P = 0.0014
Identities = 27/106 (25%), Positives = 44/106 (41%)
Query: 5 YDPDFQARLTRSNSKCQGQLEVYLKDGWHMVCSQSWGRSSKQWEDPSQASKVCQRLNCGV 64
+ P Q+RL +S C+G EV + W +C S R +WE+ +C+ CG
Sbjct: 270 FQPKVQSRLVGGSSVCEGIAEVRQRSQWEALCDSSAARGRGRWEE------LCREQQCGD 323
Query: 65 PLSLGPFLVTYTPQSSIICYGQLGSFSNCSH-SRNDMCHS-LGLTC 108
+S T +C + S C H + C+ + +TC
Sbjct: 324 LISFHTVDADKT-SPGFLCAQE--KLSQCYHLQKKKHCNKRVFVTC 366
^ = sptremblnew|AAG14901|AAG14901 CD5.1.//:trembl|U65961|U65961_1 product:
"CD5.1"; Mus musculus CD5.1 mRNA, complete cds.
//:gp|U65961|10197496 CD5.1 [Mus musculus]
Length = 494
0 100 200 300 400
| | | | | |494
sptremblnew|AAG14901| | __________________________________________________
Local hits (HSPs) | __________ _________
Score = 240 (89.5 bits), Expect = 2.2e-19, P = 2.2e-19
Identities = 47/104 (45%), Positives = 62/104 (59%)
Query: 8 DFQARLTRSNSKCQGQLEVYLKDGWHMVCSQSWGRSSKQWEDPSQASKVCQRLNCGVPLS 67
D Q L+ SNSKCQGQ+E+ +++ W VCS SW S ++ AS VC++L CG PL+
Sbjct: 31 DVQVMLSGSNSKCQGQVEIQMENKWKTVCSSSWRLSQDHSKNAQLASAVCKQLRCGDPLA 90
Query: 68 LGPFLVTYTPQSSIICYGQLGSFSNCSH-SRNDMCHSLGLTCLE 110
LGP PQ+ + C G S SNC++ S D C L L CLE
Sbjct: 91 LGPIPSLNRPQNQVFCQGSPWSISNCNNTSSQDQCLPLSLICLE 134
Score = 94 (38.1 bits), Expect = 0.0014, P = 0.0014
Identities = 27/106 (25%), Positives = 44/106 (41%)
Query: 5 YDPDFQARLTRSNSKCQGQLEVYLKDGWHMVCSQSWGRSSKQWEDPSQASKVCQRLNCGV 64
+ P Q+RL +S C+G EV + W +C S R +WE+ +C+ CG
Sbjct: 270 FQPKVQSRLVGGSSVCEGIAEVRQRSQWEALCDSSAARGRGRWEE------LCREQQCGD 323
Query: 65 PLSLGPFLVTYTPQSSIICYGQLGSFSNCSH-SRNDMCHS-LGLTC 108
+S T +C + S C H + C+ + +TC
Sbjct: 324 LISFHTVDADKT-SPGFLCAQE--KLSQCYHLQKKKHCNKRVFVTC 366
^ = swiss|P51882|CD5_RAT T-CELL SURFACE GLYCOPROTEIN CD5 PRECURSOR (LYMPHOCYTE
GLYCOPROTEIN LY- 1) (LYT-1) (LYMPHOCYTE ANTIGEN
CD5).//:trembl|D10728|RLACD5_1 product: "lymphocyte antigen CD5";
Rat mRNA for lymphocyte antigen CD5, complete cds.
//:gp|D10728|220800 lymphocyte antigen CD5 [Rattus norvegicus]
Length = 491
0 100 200 300 400
| | | | | |491
swiss|P51882|CD5_RAT | __________________________________________________
Local hits (HSPs) | __________ _________
Score = 235 (87.8 bits), Expect = 7.7e-19, P = 7.7e-19
Identities = 48/101 (47%), Positives = 62/101 (61%)
Query: 10 QARLTRSNSKCQGQLEVYLKDGWHMVCSQSWGRSSKQWEDPSQASKVCQRLNCGVPLSLG 69
Q L+ SNSKCQG +EV + +G VCS SW S W++ ++AS VCQ+L CG PL+LG
Sbjct: 33 QVMLSGSNSKCQGLVEVQM-NGMKTVCSSSWRLSQDLWKNANEASTVCQQLGCGNPLALG 91
Query: 70 PFLVTYTPQSSIICYGQLGSFSNCSHSRNDMCHSLGLTCLE 110
+ P++ I+C G SFSNCS S C L L CLE
Sbjct: 92 HLTLWNRPKNQILCQGPPWSFSNCSTSSLGQCLPLSLVCLE 132
Score = 98 (39.6 bits), Expect = 0.00053, P = 0.00053
Identities = 27/105 (25%), Positives = 43/105 (40%)
Query: 5 YDPDFQARLTRSNSKCQGQLEVYLKDGWHMVCSQSWGRSSKQWEDPSQASKVCQRLNCGV 64
+ P Q+RL +S C+G EV + W +C S R +WE+ +CQ CG
Sbjct: 268 FQPKVQSRLVGGSSVCEGIAEVRQRSQWAALCDSSAARGPGRWEE------LCQEQQCGN 321
Query: 65 PLSLGPFLVTYTPQSSIICYGQLGSFSNCSH-SRNDMCHSLGLTC 108
+S T ++C + S C + C + +TC
Sbjct: 322 LISFHVMDADRT-SPGVLCTQE--KLSQCYQLQKKTHCKRVFITC 363
^ = sptrembl|Q63098|Q63098 CD5 GLYCOPROTEIN
(FRAGMENT).//:trembl|X78985|RNCD5RN_1 gene: "CD5"; product: "CD5
glycoprotein"; R.norvegicus CD5 mRNA //:pironly|S43536|S43536
T-cell surface glycoprotein CD5 precursor - rat//:gp|X78985|475224
CD5 glycoprotein [Rattus norvegicus]
Length = 501
0 100 200 300 400 500
| | | | | |501
sptrembl|Q63098|Q6309 | __________________________________________________
Local hits (HSPs) | _________ _________
Score = 235 (87.8 bits), Expect = 8.2e-19, P = 8.2e-19
Identities = 48/101 (47%), Positives = 62/101 (61%)
Query: 10 QARLTRSNSKCQGQLEVYLKDGWHMVCSQSWGRSSKQWEDPSQASKVCQRLNCGVPLSLG 69
Q L+ SNSKCQG +EV + +G VCS SW S W++ ++AS VCQ+L CG PL+LG
Sbjct: 45 QVMLSGSNSKCQGLVEVQM-NGMKTVCSSSWRLSQDLWKNANEASTVCQQLGCGNPLALG 103
Query: 70 PFLVTYTPQSSIICYGQLGSFSNCSHSRNDMCHSLGLTCLE 110
+ P++ I+C G SFSNCS S C L L CLE
Sbjct: 104 HLTLWNRPKNQILCQGPPWSFSNCSTSSLGQCLPLSLVCLE 144
Score = 98 (39.6 bits), Expect = 0.00055, P = 0.00055
Identities = 27/105 (25%), Positives = 43/105 (40%)
Query: 5 YDPDFQARLTRSNSKCQGQLEVYLKDGWHMVCSQSWGRSSKQWEDPSQASKVCQRLNCGV 64
+ P Q+RL +S C+G EV + W +C S R +WE+ +CQ CG
Sbjct: 280 FQPKVQSRLVGGSSVCEGIAEVRQRSQWAALCDSSAARGPGRWEE------LCQEQQCGN 333
Query: 65 PLSLGPFLVTYTPQSSIICYGQLGSFSNCSH-SRNDMCHSLGLTC 108
+S T ++C + S C + C + +TC
Sbjct: 334 LISFHVMDADRT-SPGVLCTQE--KLSQCYQLQKKTHCKRVFITC 375
^ = swiss|P19238|CD5_BOVIN T-CELL SURFACE GLYCOPROTEIN CD5 PRECURSOR (LYMPHOCYTE
GLYCOPROTEIN T1/LEU-1) (LYMPHOCYTE ANTIGEN
CD5).//:trembl|X53061|BTCD5A_1 Bovine mRNA for CD5 antigen
//:gp|X53061|189 CD5 antigen (AA 1-495) [Bos taurus]
Length = 495
0 100 200 300 400
| | | | | |495
swiss|P19238|CD5_BOVI | __________________________________________________
Local hits (HSPs) | __________ _____
Score = 213 (80.0 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 49/101 (48%), Positives = 58/101 (57%)
Query: 12 RLTRSNSKCQGQLEVYLKDGWHMVCSQSWGRSSKQWEDPSQASKVCQRLNCGVPLSLGP- 70
RL+ S S+CQG+LEV W+ V SQSWG+ S P Q K+CQ L C PL L
Sbjct: 35 RLSGSGSRCQGRLEVSNGTEWYAVHSQSWGQLSLYQVAPRQFLKLCQELQCRDPLLLSSS 94
Query: 71 -FLVTYTPQSSIICYGQLGSFSNCSHSRNDMCHSLGLTCLE 110
+ Q IIC+GQLGSFSNCS +R SL L CLE
Sbjct: 95 RYFKEVQFQKLIICHGQLGSFSNCSLNRGRQVDSLALICLE 135
Score = 80 (33.2 bits), Expect = 0.046, P = 0.045
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 5 YDPDFQARLTRSNSKCQGQLEVYLKDG--WHMVCSQSWGRSSKQWEDPSQASKVCQRLNC 62
+ P Q+RL + C+G +EV G W +C SW + + ++ +VC+ C
Sbjct: 268 FQPKVQSRLVGGSDVCEGSVEVRSGKGQKWDTLCDDSWAKGT------ARRVEVCREQQC 321
Query: 63 G 63
G
Sbjct: 322 G 322
^ = sptrembl|Q07452|Q07452 T-CELL SURFACE GLYCOPROTEIN CD5 (LYMPHOCYTE
GLYCOPROTEIN T1/LEU-1) (FRAGMENT).//:trembl|M97195|OADCC5_1 gene:
"CD5"; Ovis aries Merino CD5 mRNA, partial cds.
//:pironly|I47074|I47074 gene CD5 protein - sheep
(fragment)//:gp|M97195|458563 CD5 [Ovis aries]
Length = 442
0 90 180 270 360
| | | | | |442
sptrembl|Q07452|Q0745 | __________________________________________________
Local hits (HSPs) | __________ ____________
Score = 158 (60.7 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 37/81 (45%), Positives = 44/81 (54%)
Query: 32 WHMVCSQSWGRSSKQWEDPSQASKVCQRLNCGVPLSLGPFL-VTYTP-QSSIICYGQLGS 89
W+ V QSWG+SS P Q K+CQ+L C PL L P Q +IC+GQLGS
Sbjct: 2 WYAVHGQSWGQSSLYQVMPKQFFKLCQKLQCRDPLLLSSLHHFKDRPFQKLMICHGQLGS 61
Query: 90 FSNCSHSRNDMCHSLGLTCLE 110
FSNCS +R L L C E
Sbjct: 62 FSNCSLNRGHQVGPLALICSE 82
Score = 102 (41.0 bits), Expect = 0.00017, P = 0.00017
Identities = 29/110 (26%), Positives = 45/110 (40%)
Query: 5 YDPDFQARLTRSNSKCQGQLEVYLKDG--WHMVCSQSWGRSSKQWEDPSQASKVCQRLNC 62
+ P Q+RL + C+G +EV G W +C SW + + +WE+ VC+ C
Sbjct: 215 FQPKVQSRLVGGSDMCEGSVEVRSGKGQQWDTLCDSSWAKGTARWEE------VCREQQC 268
Query: 63 GVPLSLGPFLVTYTPQSSII--CYGQLGSFSNCS--HSRNDMCHSLGLTC 108
G +S F P + Y G S C + C + +TC
Sbjct: 269 G-NVS---FYQGLDPSEKTLGGLYCPSGILSQCHKLEEKKSYCKRVFVTC 314
^ = sptrembl|Q92098|Q92098 PEMA-SRCR PROTEIN
PRECURSOR.//:trembl|U20652|PM20652_1 product: "Pema-SRCR protein
precursor"; Petromyzon marinus scavenger receptor cyteine-rich
domain superfamily Pema-SRCR mRNA, complete cds.
//:pironly|JC4361|JC4361 scavenger receptor Cys-rich epidermal
growth factor precursor - sea lamprey//:gp|U20652|790234 Pema-SRCR
protein precursor [Petromyzon marinus]
Length = 918
0 190 380 570 760
| | | | | |918
sptrembl|Q92098|Q9209 | __________________________________________________
Local hits (HSPs) | __ ____
Score = 127 (49.8 bits), Expect = 9.3e-07, P = 9.3e-07
Identities = 36/100 (36%), Positives = 46/100 (46%)
Query: 3 SWYDPDFQARLTRSNSKCQGQLEVYLKDGWHMVCSQSWGRSSKQWEDPSQASKVCQRLNC 62
S PD RL CQG++EVY W VC SW R +D A VC++L+C
Sbjct: 458 STLSPDVPVRLV-GGGWCQGRVEVYYAGSWGTVCDDSWDR-----QD---AEVVCRQLSC 508
Query: 63 GVPLSLGPFLVTYTPQSSII------CYGQLGSFSNCSHS 96
G +S P + S I CYGQ S + C+HS
Sbjct: 509 GYAVS-APSNAHFGVGSGQIWLDDVNCYGQESSLARCNHS 547
Score = 85 (35.0 bits), Expect = 0.028, P = 0.028
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 5 YDPDFQARLTRSNSKCQGQLEVYLKDGWHMVCSQSWGRSSKQWEDPSQASKVCQRLNCG 63
++ D RL + S C G++E+ W VC +WG ED A+ VC++L CG
Sbjct: 52 HEADLPVRLVQGGS-CSGRVEILYGGRWGTVCDDNWGI-----ED---ATVVCRQLGCG 101
^ = sptrembl|Q95218|Q95218 HENSIN.//:trembl|AF043112|AF043112_1 product:
"hensin"; Oryctolagus cuniculus hensin mRNA, complete cds.
//:pironly|T30549|T30549 hensin - rabbit//:gp|AF043112|4105084
hensin [Oryctolagus cuniculus]
Length = 1594
0 320 640 960 1280
| | | | | |1594
sptrembl|Q95218|Q9521 | __________________________________________________
Local hits (HSPs) | __ __ __ __ __ __ __ _ _
Score = 123 (48.4 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 34/102 (33%), Positives = 49/102 (48%)
Query: 10 QARLTRSNSKCQGQLEVYLKDGWHMVCSQSWGRSSKQWEDPSQASKVCQRLNCGVPLSLG 69
Q RL + +C+G++EV + W VC SW D + AS VC++L CG LS
Sbjct: 712 QLRLVNGSDRCEGRVEVLYQGSWGTVCDDSW--------DLNDASVVCRQLGCGTALS-A 762
Query: 70 PFLVTYTPQS-SII-----CYGQLGSFSNCSHSRNDMCHSLG 105
P + S SI+ C G + +CSH R + H+ G
Sbjct: 763 PASAQFGQSSGSIVLDDVSCSGSEPNLWSCSH-RGWLSHNCG 803
Score = 122 (48.0 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 35/106 (33%), Positives = 48/106 (45%)
Query: 6 DPDFQARLTRSNSKCQGQLEVYLKDGWHMVCSQSWGRSSKQWEDPSQASKVCQRLNCGVP 65
D RL +++CQG++EV + W VC SW D + AS VC++L CG
Sbjct: 816 DSRLAVRLVNGSTRCQGRVEVLYRGSWGTVCDDSW--------DINDASVVCRQLGCGWA 867
Query: 66 LSLGPFLVTYTPQSSII------CYGQLGSFSNCSHSRNDMCHSLG 105
+S P + S I C GQ NCSH R + H+ G
Sbjct: 868 VS-APGSARFGQGSGSIFLDEVSCSGQEPYLWNCSH-RGWLSHNCG 911
Score = 106 (42.4 bits), Expect = 0.00031, P = 0.00031
Identities = 29/101 (28%), Positives = 45/101 (44%)
Query: 10 QARLTRSNSKCQGQLEVYLKDGWHMVCSQSWGRSSKQWEDPSQASKVCQRLNCGVPLSL- 68
+ RL + +CQG++EV + W VC W D + A VC++L CG+ +S
Sbjct: 191 ELRLANGSDRCQGRVEVLYQGSWGTVCDDGW--------DINDAQVVCRQLGCGMAVSAP 242
Query: 69 GPFLVTYTPQSSII----CYGQLGSFSNCSHSRNDMCHSLG 105
G P ++ C GQ +C H R + H+ G
Sbjct: 243 GSARFGQGPGQIVLDDVSCSGQEPYLWSCHH-RGWLSHNCG 282
Score = 105 (42.0 bits), Expect = 0.00039, P = 0.00039
Identities = 29/101 (28%), Positives = 44/101 (43%)
Query: 10 QARLTRSNSKCQGQLEVYLKDGWHMVCSQSWGRSSKQWEDPSQASKVCQRLNCGVPLSL- 68
+ RL +CQG++EV + W VC W D + A VC++L CG+ +S
Sbjct: 52 ELRLANGGDRCQGRVEVLYQGSWGTVCDDGW--------DINDAQVVCRQLGCGMAVSAP 103
Query: 69 GPFLVTYTPQSSII----CYGQLGSFSNCSHSRNDMCHSLG 105
G P ++ C GQ +C H R + H+ G
Sbjct: 104 GSARFGQGPGQIVLDDVSCSGQEPYLWSCHH-RGWLSHNCG 143
Score = 105 (42.0 bits), Expect = 0.00039, P = 0.00039
Identities = 29/101 (28%), Positives = 44/101 (43%)
Query: 10 QARLTRSNSKCQGQLEVYLKDGWHMVCSQSWGRSSKQWEDPSQASKVCQRLNCGVPLSL- 68
+ RL + +CQG++EV + W VC W D + A VC++L CG +S
Sbjct: 322 ELRLANGSDRCQGRVEVLYQGSWGTVCDDGW--------DINDAQVVCRQLGCGTAVSAP 373
Query: 69 GPFLVTYTPQSSII----CYGQLGSFSNCSHSRNDMCHSLG 105
G P ++ C GQ +C H R + H+ G
Sbjct: 374 GSARFGQGPGQIVLDDVSCSGQEPYLWSCHH-RGWLSHNCG 413
Score = 105 (42.0 bits), Expect = 0.00039, P = 0.00039
Identities = 29/101 (28%), Positives = 44/101 (43%)
Query: 10 QARLTRSNSKCQGQLEVYLKDGWHMVCSQSWGRSSKQWEDPSQASKVCQRLNCGVPLSL- 68
+ RL + +CQG++EV + W VC W D + A VC++L CG +S
Sbjct: 581 ELRLANGSDRCQGRVEVLYQGSWGTVCDDGW--------DINDAQVVCRQLGCGTAVSAP 632
Query: 69 GPFLVTYTPQSSII----CYGQLGSFSNCSHSRNDMCHSLG 105
G P ++ C GQ +C H R + H+ G
Sbjct: 633 GSARFGQGPGQIVLDDVSCSGQEPYLWSCHH-RGWLSHNCG 672
Score = 97 (39.2 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 26/72 (36%), Positives = 34/72 (47%)
Query: 2 LSWYD--P-DFQARLTRSNSK---CQGQLEVYLKDGWHMVCSQSWGRSSKQWEDPSQASK 55
L+WY+ P D RL NS C G++E+Y W VC SW D A
Sbjct: 1055 LAWYNSFPRDASLRLVSGNSSYGACAGRVEIYHGGRWGTVCDDSW--------DTQDAQV 1106
Query: 56 VCQRLNCGVPLS 67
VC++L CG +S
Sbjct: 1107 VCRQLQCGDAVS 1118
Score = 83 (34.3 bits), Expect = 0.085, P = 0.082
Identities = 29/101 (28%), Positives = 45/101 (44%)
Query: 10 QARLTRSNSKCQGQLEVYLKDGWHMVCSQSWGRSSKQWEDPSQASKVCQRLNCGVPLSL- 68
+ +L + +CQG++EV L G VC W D + A VC++L CG+ +S
Sbjct: 453 ELQLANGSDRCQGRVEV-LYQG--TVCDDGW--------DINDAQVVCRQLGCGMAVSAP 501
Query: 69 GPFLVTYTPQSSII----CYGQLGSFSNCSHSRNDMCHSLG 105
G P ++ C GQ +C H R + H+ G
Sbjct: 502 GSARFGQGPGQIVLDDVSCSGQEPYLWSCHH-RGWLSHNCG 541
Score = 37 (18.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 69 GPFLVTYTPQSSIICYGQLGSFSNCSH 95
GP+ +P + +C G GSF++ S+
Sbjct: 1253 GPY--HSSPLIARVCDGARGSFTSSSN 1277
^ = sptrembl|Q95316|Q95316 M130 ANTIGEN (FRAGMENT).
Length = 127
0 30 60 90 120
| | | | | |127
sptrembl|Q95316|Q9531 | __________________________________________________
Local hits (HSPs) | _____________________________
Score = 105 (42.0 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 28/87 (32%), Positives = 38/87 (43%)
Query: 1 RLSWYDPDFQARLTRSNSKCQGQLEVYLKDGWHMVCSQSWGRSSKQWEDPSQASKVCQRL 60
R W D RL +CQG++EV + W VC SW D + A+ VC++L
Sbjct: 19 RTEW---DLALRLVNGGDRCQGRVEVLYQGSWGTVCXDSW--------DTNDANVVCRQL 67
Query: 61 NCGVPLSLGPFLVTYTPQSSIICYGQL 87
CG +S P + S I G L
Sbjct: 68 GCGWAVS-APGSARFGQGSGPILLGXL 93
WARNING: HSPs involving 81 database sequences were not reported due to the
limiting value of parameter B = 10.
Parameters:
matrix=BLOSUM62
E=10
V=50
B=10
hspmax=10
filter=none
echofilter
stats
qtype
qres
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.133 0.451 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 110 110 10. 69 3 11 22 0.22 30
29 0.21 32
Statistics:
Query Expected Observed HSPs HSPs
Frame MatID High Score High Score Reportable Reported
+0 0 66 (30.5 bits) 615 (284.2 bits) 302 26
Query Neighborhd Word Excluded Failed Successful Overlaps
Frame MatID Words Hits Hits Extensions Extensions Excluded
+0 0 4533 45957234 11349974 34468978 138282 104
Database: /dove2/data/db/nrdb
Title: nrdb Release 12.Jan.2001
Release date: 12.Jan.2001
Posted date: 11:09:32 PM MET Jan 12, 2001
Last modified: unknown
First created: unknown
Format: BLAST-1.4
# of letters in database: 189,376,495
# of sequences in database: 599,711
# of database sequences satisfying E: 91
No. of states in DFA: 561 (110 KB)
Total size of DFA: 206 KB (256 KB)
Time to generate neighborhood: 0.03u 0.01s 0.04t Elapsed: 00:00:00
No. of threads or processors used: 4
Search cpu time: 68.57u 2.99s 71.56t Elapsed: 00:00:26
Total cpu time: 68.63u 3.05s 71.68t Elapsed: 00:00:26
Start: Tue Jan 23 18:26:32 2001 End: Tue Jan 23 18:26:58 2001
WARNINGS ISSUED: 3
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