BLASTP2 Result
of 
Bork Group's Advanced BLAST2 Search Service at 
EMBL.
back to BLAST2
BLASTP 2.0MP-WashU [16-Dec-1999] [irix6-r10k-L64 23:35:48 16-Dec-1999]
Copyright (C) 1996-1999 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-1999) http://blast.wustl.edu
Query= query_sequence
(110 letters)
Database: pdb Release 17.Jan.2001
16,224 sequences; 3,495,349 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Query sequence and locally-aligned HSPs from database sequences
0 30 60 90
| | | | |110
query_sequence | __________________________________________________
^ v pdb|1BY2|1BY2 | _________________________________________
^ v pdb|1D8Z|1D8Z-A | ____________________
^ v pdb|1TAB|1TAB-I | _________ ______
^ v pdb|1DF9|1DF9-C | __________ _______
^ v pdb|1D6R|1D6R-I | _______
Alignments:
^ = pdb|1BY2|1BY2 STRUCTURE OF M2BP SCAVENGER RECEPTOR CYSTEINE-RICH DOMAIN
Length = 119
0 30 60 90
| | | | |119
pdb|1BY2|1BY2 | __________________________________________________
Local hits (HSPs) | _________________________________________
Score = 69 (29.3 bits), Expect = 0.019, P = 0.019
Identities = 27/100 (27%), Positives = 40/100 (40%)
Query: 8 DFQARLTRSNSKCQGQLEVYLKDGWHMVCSQSWGRSSKQ-------WEDPSQA-SKVCQR 59
D RL + QG++E++ + W VC W + +E+ +QA +
Sbjct: 7 DGDMRLADGGATNQGRVEIFYRGQWGTVCDNLWDLTDASVVCRALGFENATQALGRAAFG 66
Query: 60 LNCGVPLSLGPFLVTYTPQSSIICYGQLGSF-SNCSHSRN 98
G P+ L T T S C LG SNC H R+
Sbjct: 67 QGSG-PIMLDEVQCTGTEASLADCKS-LGWLKSNCRHERD 104
^ = pdb|1D8Z|1D8Z-A SOLUTION STRUCTURE OF THE FIRST RNA-BINDING DOMAIN (RBD1) OF
HU ANTIGEN C (HUC)
Length = 89
0 20 40 60 80
| | | | | |89
pdb|1D8Z|1D8Z-A | __________________________________________________
Local hits (HSPs) | ________________________
Score = 54 (24.1 bits), Expect = 1.0, P = 0.63
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 35 VCSQSWGRSSKQWEDPSQASKVCQRLNCGVPLSLGPFLVTYTPQSS 80
+ QS G + DP+ A K LN G+ L V+Y SS
Sbjct: 41 ITGQSLGYGFVNYSDPNDADKAINTLN-GLKLQTKTIKVSYARPSS 85
^ = pdb|1TAB|1TAB-I TRYPSIN (E.C.3.4.21.4) COMPLEX WITH BOWMAN-*BIRK INHIBITOR
(/AB-I$)
Length = 82
0 20 40 60 80
| | | | | |82
pdb|1TAB|1TAB-I | __________________________________________________
Local hits (HSPs) | ______________ __________
Score = 39 (18.8 bits), Expect = 4.0, Sum P(2) = 0.98
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 41 GRSSKQWEDPSQASK-VCQRLNC 62
G + ++PS++SK C + +C
Sbjct: 2 GHHDETTDEPSESSKPCCDQCSC 24
Score = 37 (18.1 bits), Expect = 4.0, Sum P(2) = 0.98
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 93 CSHSRNDMCHSLGLTC 108
CS R + CHS +C
Sbjct: 34 CSDIRLNSCHSACKSC 49
^ = pdb|1DF9|1DF9-C DENGUE VIRUS NS3-PROTEASE COMPLEXED WITH MUNG-BEAN BOWMAN-
BIRK INHIBITOR
Length = 72
0 20 40 60
| | | | |72
pdb|1DF9|1DF9-C | __________________________________________________
Local hits (HSPs) | ______________ ___________
Score = 39 (18.8 bits), Expect = 5.7, Sum P(2) = 1.0
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 92 NCSHSRNDMCHSLGLTCL 109
+C++ R + CHS +C+
Sbjct: 27 HCANIRLNSCHSACKSCI 44
Score = 32 (16.3 bits), Expect = 5.7, Sum P(2) = 1.0
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 48 EDPSQASKVCQRLNCGVPLSLGP 70
++PS++S+ C +C S+ P
Sbjct: 3 DEPSESSEPCCD-SCDCTKSIPP 24
^ = pdb|1D6R|1D6R-I CRYSTAL STRUCTURE OF CANCER CHEMOPREVENTIVE BOWMAN-BIRK
INHIBITOR IN TERNARY COMPLEX WITH BOVINE TRYPSIN AT 2.3 A
RESOLUTION. STRUCTURAL BASIS OF JANUS-FACED SERINE PROTEASE
INHIBITOR SPECIFICITY
Length = 58
0 20 40
| | | |58
pdb|1D6R|1D6R-I | __________________________________________________
Local hits (HSPs) | _____________
Score = 40 (19.1 bits), Expect = 9.3, P = 1.0
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 93 CSHSRNDMCHSLGLTCL 109
CS R + CHS +C+
Sbjct: 19 CSDMRLNSCHSACKSCI 35
Parameters:
matrix=BLOSUM62
E=10
V=50
B=50
hspmax=10
filter=none
echofilter
stats
qtype
qres
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.133 0.451 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 110 110 10. 56 3 11 22 0.22 30
29 0.21 32
Statistics:
Query Expected Observed HSPs HSPs
Frame MatID High Score High Score Reportable Reported
+0 0 54 (25.0 bits) 58 (26.8 bits) 7 7
Query Neighborhd Word Excluded Failed Successful Overlaps
Frame MatID Words Hits Hits Extensions Extensions Excluded
+0 0 4533 878549 223570 652384 2595 4
Database: /dove2/data/db/pdb
Title: pdb Release 17.Jan.2001
Release date: 17.Jan.2001
Posted date: 11:03:43 PM MET Jan 17, 2001
Last modified: unknown
First created: unknown
Format: BLAST-1.4
# of letters in database: 3,495,349
# of sequences in database: 16,224
# of database sequences satisfying E: 5
No. of states in DFA: 561 (110 KB)
Total size of DFA: 206 KB (256 KB)
Time to generate neighborhood: 0.03u 0.00s 0.03t Elapsed: 00:00:00
No. of threads or processors used: 4
Search cpu time: 1.81u 0.19s 2.00t Elapsed: 00:00:01
Total cpu time: 1.86u 0.23s 2.09t Elapsed: 00:00:02
Start: Tue Jan 23 10:13:42 2001 End: Tue Jan 23 10:13:44 2001
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