BLASTP2 Result

of Bork Group Bork Group's Advanced BLAST2 Search Service at EMBL EMBL. back to BLAST2
BLASTP 2.0MP-WashU [16-Dec-1999] [irix6-r10k-L64 23:35:48 16-Dec-1999] Copyright (C) 1996-1999 Washington University, Saint Louis, Missouri USA. All Rights Reserved. Reference: Gish, W. (1996-1999) http://blast.wustl.edu Query= query_sequence (87 letters) Database: pdb Release 17.Jan.2001 16,224 sequences; 3,495,349 total letters. Searching....10....20....30....40....50....60....70....80....90....100% done
Summary: Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N pdb|1QH6|1QH6-A CATALYSIS AND SPECIFICITY IN ENZYMATIC GL... 68 0.0068 1 pdb|1QH7|1QH7-A CATALYSIS AND SPECIFICITY IN ENZYMATIC GL... 68 0.0068 1 pdb|1F53|1F53-A NMR STRUCTURE OF KILLER TOXIN-LIKE PROTEI... 53 0.35 1 pdb|1XND|1XND XYLANASE (ENDO-1,4-BETA-XYLANASE) (E.C.3.... 58 0.46 1 pdb|1ENX|1ENX-A MOLECULE: ENDO-1,4-BETA-XYLANASE II; SYNO... 57 0.59 1 pdb|1RED|1RED-A ENDO-1,4-BETA-XYLANASE II COMPLEX WITH 4,... 57 0.59 1 pdb|1REE|1REE-A ENDO-1,4-BETA-XYLANASE II COMPLEX WITH 3,... 57 0.59 1 pdb|1REF|1REF-A ENDO-1,4-BETA-XYLANASE II COMPLEX WITH 2,... 57 0.59 1 pdb|1XYO|1XYO-A MOLECULE: ENDO-1,4-BETA-XYLANASE II; SYNO... 57 0.59 1 pdb|1XYP|1XYP-A MOLECULE: ENDO-1,4-BETA-XYLANASE II; SYNO... 57 0.59 1 pdb|1C4R|1C4R-A THE STRUCTURE OF THE LIGAND-BINDING DOMAI... 55 0.84 1 pdb|2BVV|2BVV-A SUGAR RING DISTORTION IN THE GLYCOSYL-ENZ... 55 0.85 1 pdb|2SN3|2SN3 SCORPION NEUROTOXIN (VARIANT 3) 44 0.94 1 pdb|1F5J|1F5J-A CRYSTAL STRUCTURE OF XYNB, A HIGHLY THERM... 54 0.95 1 pdb|1BCX|1BCX XYLANASE (INACTIVE FORM, ENDO-BETA-1,4-XY... 53 0.98 1 pdb|1BVV|1BVV SUGAR RING DISTORTION IN THE GLYCOSYL-ENZ... 53 0.98 1 pdb|1C5H|1C5H-A HYDROGEN BONDING AND CATALYSIS: AN UNEXPE... 53 0.98 1 pdb|1C5I|1C5I-A HYDROGEN BONDING AND CATALYSIS: AN UNEXPE... 53 0.98 1 pdb|1XNB|1XNB XYLANASE (ENDO-1,4-BETA-XYLANASE) (E.C.3.... 53 0.98 1 pdb|1XNC|1XNC XYLANASE (ENDO-1,4-BETA-XYLANASE) (E.C.3.... 53 0.98 1 pdb|1QKZ|1QKZ-H FAB FRAGMENT (MN14C11.6) IN COMPLEX WITH ... 53 0.994 1 pdb|1A0I|1A0I ATP-DEPENDENT DNA LIGASE FROM BACTERIOPHA... 54 0.999 1 pdb|1CKR|1CKR-A HIGH RESOLUTION SOLUTION STRUCTURE OF THE... 50 0.9998 1 pdb|7HSC|7HSC-A HIGH RESOLUTION SOLUTION STRUCTURE OF THE... 50 0.9998 1


Query sequence and locally-aligned HSPs from database sequences 0 20 40 60 80 | | | | | |87 query_sequence | __________________________________________________ ^ v pdb|1QH6|1QH6-A | _______________________________________ ^ v pdb|1QH7|1QH7-A | _______________________________________ ^ v pdb|1F53|1F53-A | __________________________ ^ v pdb|1XND|1XND | ___________________________________________ ^ v pdb|1ENX|1ENX-A | ______________________________________ ^ v pdb|1RED|1RED-A | ______________________________________ ^ v pdb|1REE|1REE-A | ______________________________________ ^ v pdb|1REF|1REF-A | ______________________________________ ^ v pdb|1XYO|1XYO-A | ______________________________________ ^ v pdb|1XYP|1XYP-A | ______________________________________ ^ v pdb|1C4R|1C4R-A | _____________________________ ^ v pdb|2BVV|2BVV-A | _____________________ ^ v pdb|2SN3|2SN3 | _________________ ^ v pdb|1F5J|1F5J-A | _________________________ ^ v pdb|1BCX|1BCX | _____________________ ^ v pdb|1BVV|1BVV | _____________________ ^ v pdb|1C5H|1C5H-A | _____________________ ^ v pdb|1C5I|1C5I-A | _____________________ ^ v pdb|1XNB|1XNB | _____________________ ^ v pdb|1XNC|1XNC | _____________________ ^ v pdb|1QKZ|1QKZ-H | ___________________________ ^ v pdb|1A0I|1A0I | __________________ ^ v pdb|1CKR|1CKR-A | ______________________ ^ v pdb|7HSC|7HSC-A | ______________________ Alignments: ^ = pdb|1QH6|1QH6-A CATALYSIS AND SPECIFICITY IN ENZYMATIC GLYCOSIDE HYDROLASES: A 2,5B CONFORMATION FOR THE GLYCOSYL-ENZYME INTERMIDIATE REVEALED BY THE STRUCTURE OF THE BACILLUS AGARADHAERENS FAMILY 11 XYLANASE Length = 206 0 50 100 150 200 | | | | | |206 pdb|1QH6|1QH6-A | __________________________________________________ Local hits (HSPs) | _______________ Score = 68 (29.0 bits), Expect = 0.0068, P = 0.0068 Identities = 18/68 (26%), Positives = 31/68 (45%) Query: 8 NENSYLEIHNNEGRDTLCFANAGTMPVAIYGVNWVESGNNVVTLQFQRNLSDPRLETITL 67 N N+ L + +T G M + YG N+ +GN + + + + DP +E + Sbjct: 41 NVNNILFRKGKKFNETQTHQQVGNMSIN-YGANFQPNGNAYLCV-YGWTV-DPLVEYYIV 97 Query: 68 QKWGSWNP 75 WG+W P Sbjct: 98 DSWGNWRP 105 ^ = pdb|1QH7|1QH7-A CATALYSIS AND SPECIFICITY IN ENZYMATIC GLYCOSIDE HYDROLASES: A 2,5B CONFORMATION FOR THE GLYCOSYL-ENZYME INTERMIDIATE REVEALED BY THE STRUCTURE OF THE BACILLUS AGARADHAERENS FAMILY 11 XYLANASE Length = 206 0 50 100 150 200 | | | | | |206 pdb|1QH7|1QH7-A | __________________________________________________ Local hits (HSPs) | _______________ Score = 68 (29.0 bits), Expect = 0.0068, P = 0.0068 Identities = 18/68 (26%), Positives = 31/68 (45%) Query: 8 NENSYLEIHNNEGRDTLCFANAGTMPVAIYGVNWVESGNNVVTLQFQRNLSDPRLETITL 67 N N+ L + +T G M + YG N+ +GN + + + + DP +E + Sbjct: 41 NVNNILFRKGKKFNETQTHQQVGNMSIN-YGANFQPNGNAYLCV-YGWTV-DPLVEYYIV 97 Query: 68 QKWGSWNP 75 WG+W P Sbjct: 98 DSWGNWRP 105 ^ = pdb|1F53|1F53-A NMR STRUCTURE OF KILLER TOXIN-LIKE PROTEIN SKLP Length = 84 0 20 40 60 80 | | | | | |84 pdb|1F53|1F53-A | __________________________________________________ Local hits (HSPs) | ____________________________ Score = 53 (23.7 bits), Expect = 0.42, P = 0.35 Identities = 15/50 (30%), Positives = 27/50 (54%) Query: 2 INRTDCN--ENSYLEIHNNEG--RDTLCFANAGTMPVAIYGVNWVESGNN 47 I+ C EN +L+I ++ G + C+AN G + + V+ + +GNN Sbjct: 1 IDHVPCRGGEN-FLKIWSHSGGQQSVDCYANRGRIDFGGWWVDKISTGNN 49 ^ = pdb|1XND|1XND XYLANASE (ENDO-1,4-BETA-XYLANASE) (E.C.3.2.1.8) Length = 190 0 40 80 120 160 | | | | | |190 pdb|1XND|1XND | __________________________________________________ Local hits (HSPs) | _________________ Score = 58 (25.5 bits), Expect = 0.62, P = 0.46 Identities = 22/75 (29%), Positives = 32/75 (42%) Query: 10 NSYLEIHNNEGRDTLCFANAGTMPVAIYGVNWVESGNNVVTLQFQRNLSDPRLETITLQK 69 N Y + N+G + + N G + VNW SGN V +Q P + + Sbjct: 11 NGYYYSYWNDGHAGVTYTNGGG---GSFTVNWSNSGNFVAGKGWQ-----PGTKNKVINF 62 Query: 70 WGSWNPGHIHEILSI 84 GS+NP + LSI Sbjct: 63 SGSYNPNG-NSYLSI 76 ^ = pdb|1ENX|1ENX-A MOLECULE: ENDO-1,4-BETA-XYLANASE II; SYNONYM: XYNII; EC: 3.2.1.8; OTHER_DETAILS: PH 6.0 Length = 189 0 40 80 120 160 | | | | | |189 pdb|1ENX|1ENX-A | __________________________________________________ Local hits (HSPs) | _______________ Score = 57 (25.1 bits), Expect = 0.89, P = 0.59 Identities = 19/66 (28%), Positives = 28/66 (42%) Query: 10 NSYLEIHNNEGRDTLCFANAGTMPVAIYGVNWVESGNNVVTLQFQRNLSDPRLETITLQK 69 N Y + N+G + + N P + VNW SGN V +Q P + + Sbjct: 10 NGYFYSYWNDGHGGVTYTNG---PGGQFSVNWSNSGNFVGGKGWQ-----PGTKNKVINF 61 Query: 70 WGSWNP 75 GS+NP Sbjct: 62 SGSYNP 67 ^ = pdb|1RED|1RED-A ENDO-1,4-BETA-XYLANASE II COMPLEX WITH 4,5-EPOXYPENTYL- BETA-D-XYLOSIDE Length = 189 0 40 80 120 160 | | | | | |189 pdb|1RED|1RED-A | __________________________________________________ Local hits (HSPs) | _______________ Score = 57 (25.1 bits), Expect = 0.89, P = 0.59 Identities = 19/66 (28%), Positives = 28/66 (42%) Query: 10 NSYLEIHNNEGRDTLCFANAGTMPVAIYGVNWVESGNNVVTLQFQRNLSDPRLETITLQK 69 N Y + N+G + + N P + VNW SGN V +Q P + + Sbjct: 10 NGYFYSYWNDGHGGVTYTNG---PGGQFSVNWSNSGNFVGGKGWQ-----PGTKNKVINF 61 Query: 70 WGSWNP 75 GS+NP Sbjct: 62 SGSYNP 67 ^ = pdb|1REE|1REE-A ENDO-1,4-BETA-XYLANASE II COMPLEX WITH 3,4-EPOXYBUTYL- BETA-D-XYLOSIDE Length = 189 0 40 80 120 160 | | | | | |189 pdb|1REE|1REE-A | __________________________________________________ Local hits (HSPs) | _______________ Score = 57 (25.1 bits), Expect = 0.89, P = 0.59 Identities = 19/66 (28%), Positives = 28/66 (42%) Query: 10 NSYLEIHNNEGRDTLCFANAGTMPVAIYGVNWVESGNNVVTLQFQRNLSDPRLETITLQK 69 N Y + N+G + + N P + VNW SGN V +Q P + + Sbjct: 10 NGYFYSYWNDGHGGVTYTNG---PGGQFSVNWSNSGNFVGGKGWQ-----PGTKNKVINF 61 Query: 70 WGSWNP 75 GS+NP Sbjct: 62 SGSYNP 67 ^ = pdb|1REF|1REF-A ENDO-1,4-BETA-XYLANASE II COMPLEX WITH 2,3-EPOXYPROPYL- BETA-D-XYLOSIDE Length = 189 0 40 80 120 160 | | | | | |189 pdb|1REF|1REF-A | __________________________________________________ Local hits (HSPs) | _______________ Score = 57 (25.1 bits), Expect = 0.89, P = 0.59 Identities = 19/66 (28%), Positives = 28/66 (42%) Query: 10 NSYLEIHNNEGRDTLCFANAGTMPVAIYGVNWVESGNNVVTLQFQRNLSDPRLETITLQK 69 N Y + N+G + + N P + VNW SGN V +Q P + + Sbjct: 10 NGYFYSYWNDGHGGVTYTNG---PGGQFSVNWSNSGNFVGGKGWQ-----PGTKNKVINF 61 Query: 70 WGSWNP 75 GS+NP Sbjct: 62 SGSYNP 67 ^ = pdb|1XYO|1XYO-A MOLECULE: ENDO-1,4-BETA-XYLANASE II; SYNONYM: XYNII; EC: 3.2.1.8; OTHER_DETAILS: PH 4.5 Length = 189 0 40 80 120 160 | | | | | |189 pdb|1XYO|1XYO-A | __________________________________________________ Local hits (HSPs) | _______________ Score = 57 (25.1 bits), Expect = 0.89, P = 0.59 Identities = 19/66 (28%), Positives = 28/66 (42%) Query: 10 NSYLEIHNNEGRDTLCFANAGTMPVAIYGVNWVESGNNVVTLQFQRNLSDPRLETITLQK 69 N Y + N+G + + N P + VNW SGN V +Q P + + Sbjct: 10 NGYFYSYWNDGHGGVTYTNG---PGGQFSVNWSNSGNFVGGKGWQ-----PGTKNKVINF 61 Query: 70 WGSWNP 75 GS+NP Sbjct: 62 SGSYNP 67 ^ = pdb|1XYP|1XYP-A MOLECULE: ENDO-1,4-BETA-XYLANASE II; SYNONYM: XYNII; EC: 3.2.1.8; OTHER_DETAILS: PH 6.5 Length = 189 0 40 80 120 160 | | | | | |189 pdb|1XYP|1XYP-A | __________________________________________________ Local hits (HSPs) | _______________ Score = 57 (25.1 bits), Expect = 0.89, P = 0.59 Identities = 19/66 (28%), Positives = 28/66 (42%) Query: 10 NSYLEIHNNEGRDTLCFANAGTMPVAIYGVNWVESGNNVVTLQFQRNLSDPRLETITLQK 69 N Y + N+G + + N P + VNW SGN V +Q P + + Sbjct: 10 NGYFYSYWNDGHGGVTYTNG---PGGQFSVNWSNSGNFVGGKGWQ-----PGTKNKVINF 61 Query: 70 WGSWNP 75 GS+NP Sbjct: 62 SGSYNP 67 ^ = pdb|1C4R|1C4R-A THE STRUCTURE OF THE LIGAND-BINDING DOMAIN OF NEUREXIN 1BETA: REGULATION OF LNS DOMAIN FUNCTION BY ALTERNATIVE SPLICING Length = 182 0 40 80 120 160 | | | | | |182 pdb|1C4R|1C4R-A | __________________________________________________ Local hits (HSPs) | _____________ Score = 55 (24.4 bits), Expect = 1.9, P = 0.84 Identities = 15/52 (28%), Positives = 28/52 (53%) Query: 12 YLEIHNNEGRDTLCFANAGTMPVAIYGVNWVESGNNVVTLQFQRNLSDPRLE 63 YLE+H ++G+ + F N GT +AI N + + ++F R+ + L+ Sbjct: 58 YLELHIHQGKIGVKF-NVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQ 108 ^ = pdb|2BVV|2BVV-A SUGAR RING DISTORTION IN THE GLYCOSYL-ENZYME INTERMEDIATE OF A FAMILY G/11 XYLANASE. Length = 185 0 40 80 120 160 | | | | | |185 pdb|2BVV|2BVV-A | __________________________________________________ Local hits (HSPs) | _________ Score = 55 (24.4 bits), Expect = 1.9, P = 0.85 Identities = 14/38 (36%), Positives = 20/38 (52%) Query: 38 GVNWVESGNNVVTLQFQRNLSDPRLETITLQKWGSWNP 75 GV W +GN +TL F S P +E + WG++ P Sbjct: 56 GV-WAPNGNGYLTL-FGWTRS-PLIEYYVVDSWGTYRP 90 ^ = pdb|2SN3|2SN3 SCORPION NEUROTOXIN (VARIANT 3) Length = 65 0 20 40 60 | | | | |65 pdb|2SN3|2SN3 | __________________________________________________ Local hits (HSPs) | ________________________ Score = 44 (20.5 bits), Expect = 2.9, P = 0.94 Identities = 11/31 (35%), Positives = 18/31 (58%) Query: 1 MINRTDCNENSYLEIHNNEGRDTLCFA-NAG 30 ++ ++D + L++ NEG DT C A N G Sbjct: 5 LVKKSDGCKYGCLKLGENEGCDTECKAKNQG 35 ^ = pdb|1F5J|1F5J-A CRYSTAL STRUCTURE OF XYNB, A HIGHLY THERMOSTABLE BETA-1,4- XYLANASE FROM DICTYOGLOMUS THERMOPHILUM RT46B.1, AT 1.8 A RESOLUTION Length = 199 0 40 80 120 160 | | | | | |199 pdb|1F5J|1F5J-A | __________________________________________________ Local hits (HSPs) | __________ Score = 54 (24.1 bits), Expect = 3.0, P = 0.95 Identities = 11/46 (23%), Positives = 24/46 (52%) Query: 30 GTMPVAIYGVNWVESGNNVVTLQFQRNLSDPRLETITLQKWGSWNP 75 GT+ + Y + +GN+ + + ++P +E ++ WG+W P Sbjct: 60 GTIRIT-YSATYNPNGNSYLCIYGWS--TNPLVEFYIVESWGNWRP 102 ^ = pdb|1BCX|1BCX XYLANASE (INACTIVE FORM, ENDO-BETA-1,4-XYLANASE) (E.C.3.2.1.8) MUTANT WITH GLU 172 REPLACED BY CYS (E172C) COMPLEXED WITH XYLOBIOSE Length = 185 0 40 80 120 160 | | | | | |185 pdb|1BCX|1BCX | __________________________________________________ Local hits (HSPs) | _________ Score = 53 (23.7 bits), Expect = 4.0, P = 0.98 Identities = 13/39 (33%), Positives = 21/39 (53%) Query: 38 GVNWVESGNNVVTLQ-FQRNLSDPRLETITLQKWGSWNP 75 GV W +GN +TL + R+ P +E + WG++ P Sbjct: 56 GV-WAPNGNGYLTLYGWTRS---PLIEYYVVDSWGTYRP 90 ^ = pdb|1BVV|1BVV SUGAR RING DISTORTION IN THE GLYCOSYL-ENZYME INTERMEDIATE OF A FAMILY G/11 XYLANASE Length = 185 0 40 80 120 160 | | | | | |185 pdb|1BVV|1BVV | __________________________________________________ Local hits (HSPs) | _________ Score = 53 (23.7 bits), Expect = 4.0, P = 0.98 Identities = 13/39 (33%), Positives = 21/39 (53%) Query: 38 GVNWVESGNNVVTLQ-FQRNLSDPRLETITLQKWGSWNP 75 GV W +GN +TL + R+ P +E + WG++ P Sbjct: 56 GV-WAPNGNGYLTLYGWTRS---PLIEYYVVDSWGTYRP 90 ^ = pdb|1C5H|1C5H-A HYDROGEN BONDING AND CATALYSIS: AN UNEXPECTED EXPLANATION FOR HOW A SINGLE AMINO ACID SUBSTITUTION CAN CHANGE THE PH OPTIMUM OF A GLYCOSIDASE Length = 185 0 40 80 120 160 | | | | | |185 pdb|1C5H|1C5H-A | __________________________________________________ Local hits (HSPs) | _________ Score = 53 (23.7 bits), Expect = 4.0, P = 0.98 Identities = 13/39 (33%), Positives = 21/39 (53%) Query: 38 GVNWVESGNNVVTLQ-FQRNLSDPRLETITLQKWGSWNP 75 GV W +GN +TL + R+ P +E + WG++ P Sbjct: 56 GV-WAPNGNGYLTLYGWTRS---PLIEYYVVDSWGTYRP 90 ^ = pdb|1C5I|1C5I-A HYDROGEN BONDING AND CATALYSIS: AN UNEXPECTED EXPLANATION FOR HOW A SINGLE AMINO ACID SUBSTITUTION CAN CHANGE THE PH OPTIMUM OF A GLYCOSIDASE Length = 185 0 40 80 120 160 | | | | | |185 pdb|1C5I|1C5I-A | __________________________________________________ Local hits (HSPs) | _________ Score = 53 (23.7 bits), Expect = 4.0, P = 0.98 Identities = 13/39 (33%), Positives = 21/39 (53%) Query: 38 GVNWVESGNNVVTLQ-FQRNLSDPRLETITLQKWGSWNP 75 GV W +GN +TL + R+ P +E + WG++ P Sbjct: 56 GV-WAPNGNGYLTLYGWTRS---PLIEYYVVDSWGTYRP 90 ^ = pdb|1XNB|1XNB XYLANASE (ENDO-1,4-BETA-XYLANASE) (E.C.3.2.1.8) Length = 185 0 40 80 120 160 | | | | | |185 pdb|1XNB|1XNB | __________________________________________________ Local hits (HSPs) | _________ Score = 53 (23.7 bits), Expect = 4.0, P = 0.98 Identities = 13/39 (33%), Positives = 21/39 (53%) Query: 38 GVNWVESGNNVVTLQ-FQRNLSDPRLETITLQKWGSWNP 75 GV W +GN +TL + R+ P +E + WG++ P Sbjct: 56 GV-WAPNGNGYLTLYGWTRS---PLIEYYVVDSWGTYRP 90 ^ = pdb|1XNC|1XNC XYLANASE (ENDO-1,4-BETA-XYLANASE) (E.C.3.2.1.8) MUTANT WITH SER 100 REPLACED BY CYS AND ASN 148 REPLACED BY CYS (S100C,N148C) Length = 185 0 40 80 120 160 | | | | | |185 pdb|1XNC|1XNC | __________________________________________________ Local hits (HSPs) | _________ Score = 53 (23.7 bits), Expect = 4.0, P = 0.98 Identities = 13/39 (33%), Positives = 21/39 (53%) Query: 38 GVNWVESGNNVVTLQ-FQRNLSDPRLETITLQKWGSWNP 75 GV W +GN +TL + R+ P +E + WG++ P Sbjct: 56 GV-WAPNGNGYLTLYGWTRS---PLIEYYVVDSWGTYRP 90 ^ = pdb|1QKZ|1QKZ-H FAB FRAGMENT (MN14C11.6) IN COMPLEX WITH A PEPTIDE ANTIGEN DERIVED FROM NEISSERIA MENINGITIDIS P1.7 SEROSUBTYPE ANTIGEN AND DOMAIN II FROM STREPTOCOCCAL PROTEIN G Length = 219 0 50 100 150 200 | | | | | |219 pdb|1QKZ|1QKZ-H | __________________________________________________ Local hits (HSPs) | __________ Score = 53 (23.7 bits), Expect = 5.2, P = 0.99 Identities = 13/47 (27%), Positives = 26/47 (55%) Query: 2 INRTDCNENSYLEIHNNEGRDTLCFANAGTMPVAIYGVNWVESGNNV 48 I+R + N YL++++ + DT + A P+ YG+++ G +V Sbjct: 70 ISRDNAKNNLYLQMNSLKSEDTGMYYCARD-PLEYYGMDYWGQGTSV 115 ^ = pdb|1A0I|1A0I ATP-DEPENDENT DNA LIGASE FROM BACTERIOPHAGE T7 COMPLEX WITH ATP Length = 348 0 70 140 210 280 | | | | | |348 pdb|1A0I|1A0I | __________________________________________________ Local hits (HSPs) | _____ Score = 54 (24.1 bits), Expect = 6.6, P = 1.0 Identities = 14/37 (37%), Positives = 19/37 (51%) Query: 42 VESGNNVVTLQFQRNLSDPRLETI---TLQKWGSWNP 75 +ESG V R L D ET+ TL +WG ++P Sbjct: 271 LESGRLVNATNISRALMDEFTETVKEATLSQWGFFSP 307 ^ = pdb|1CKR|1CKR-A HIGH RESOLUTION SOLUTION STRUCTURE OF THE HEAT SHOCK COGNATE-70 KD SUBSTRATE BINDING DOMAIN OBTAINED BY MULTIDIMENSIONAL NMR TECHNIQUES Length = 159 0 40 80 120 | | | | |159 pdb|1CKR|1CKR-A | __________________________________________________ Local hits (HSPs) | ____________ Score = 50 (22.7 bits), Expect = 8.5, P = 1.0 Identities = 10/40 (25%), Positives = 21/40 (52%) Query: 42 VESGNNVVTLQFQRNLSDPRLETITLQKWGSWNPGHIHEI 81 +E+ V+T+ +RN + P +T T + PG + ++ Sbjct: 19 IETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQV 58 ^ = pdb|7HSC|7HSC-A HIGH RESOLUTION SOLUTION STRUCTURE OF THE HEAT SHOCK COGNATE-70 KD SUBSTRATE BINDING DOMAIN OBTAINED BY MULTIDIMENSIONAL NMR TECHNIQUES Length = 159 0 40 80 120 | | | | |159 pdb|7HSC|7HSC-A | __________________________________________________ Local hits (HSPs) | ____________ Score = 50 (22.7 bits), Expect = 8.5, P = 1.0 Identities = 10/40 (25%), Positives = 21/40 (52%) Query: 42 VESGNNVVTLQFQRNLSDPRLETITLQKWGSWNPGHIHEI 81 +E+ V+T+ +RN + P +T T + PG + ++ Sbjct: 19 IETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQV 58 Parameters: matrix=BLOSUM62 E=10 V=50 B=50 hspmax=10 filter=none echofilter stats qtype qres ctxfactor=1.00 Query ----- As Used ----- ----- Computed ---- Frame MatID Matrix name Lambda K H Lambda K H +0 0 BLOSUM62 0.319 0.136 0.433 same same same Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a Query Frame MatID Length Eff.Length E S W T X E2 S2 +0 0 87 87 10. 53 3 11 22 0.24 29 28 0.24 30 Statistics: Query Expected Observed HSPs HSPs Frame MatID High Score High Score Reportable Reported +0 0 53 (24.4 bits) 50 (23.0 bits) 24 24 Query Neighborhd Word Excluded Failed Successful Overlaps Frame MatID Words Hits Hits Extensions Extensions Excluded +0 0 3111 713816 166530 543928 3358 0 Database: /dove2/data/db/pdb Title: pdb Release 17.Jan.2001 Release date: 17.Jan.2001 Posted date: 11:03:43 PM MET Jan 17, 2001 Last modified: unknown First created: unknown Format: BLAST-1.4 # of letters in database: 3,495,349 # of sequences in database: 16,224 # of database sequences satisfying E: 24 No. of states in DFA: 559 (110 KB) Total size of DFA: 179 KB (192 KB) Time to generate neighborhood: 0.02u 0.00s 0.02t Elapsed: 00:00:00 No. of threads or processors used: 4 Search cpu time: 1.79u 0.15s 1.94t Elapsed: 00:00:01 Total cpu time: 1.83u 0.20s 2.03t Elapsed: 00:00:01 Start: Tue Jan 23 10:15:12 2001 End: Tue Jan 23 10:15:13 2001

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