The HAMAP project aims to automatically annotate a significant percentage
of proteins originating from microbial genome sequencing projects. In order
to maintain a high quality of annotation, tools that are being developed
specifically deal with two completely separate subsets of bacterial and
archaeal proteins:
- proteins that have no recognizable similarity to any other microbial
or non-microbial proteins;
- proteins that are part of well-defined families or subfamilies.
HAMAP proteomes
presents a list of completely sequenced microbial genomes.
HAMAP families are a
collection of manually curated microbial protein families used for automatic
annotation.
HAMAP documents link to documents
describing HAMAP and to relevant external sites.
The HAMAP
FTP server (ftp.expasy.org/databases/complete_proteomes)
contains complete proteome files. These files contain non-redundant set
of proteins from Swiss-Prot and TrEMBL for each completely sequenced proteome,
and are updated at every weekly release of Swiss-Prot.
If you have any question or suggestion regarding the HAMAP project, please
send us an email at: hamap@isb-sib.ch
.
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