FatiGO Data mining with Gene Ontology"

FatiGO Data mining with Gene Ontology

	Bioinformatics Unit - CNIO
	Datamining with Gene Ontology Help

GO results

Total number of initial genes : 11

Total number of Cluster IDs retired: 4 and their currents Cluster IDs: 54

Total number of genes: 61

Total number of genes with GO at level 3 and biological_process: 29

Total number of genes with GO but NOT at level 3 and ontology (biological_process): 3

Total number of genes without GO: 29


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FatiWise: an extension of FatiGO for InterPro motifs, KEGG pathways and SwissProt keywords

GO at level 3 and biological_process - Genes (Text Format)
*cell communication (GO:0007154)*	Hs.79141 Hs.419756 Hs.8136 Hs.445445 Hs.23719 Hs.16530 Hs.275243
*metabolism (GO:0008152)*	Hs.386532 Hs.369026 Hs.443458 Hs.419756 Hs.180610 Hs.416769 Hs.321142 Hs.90336 Hs.8136 Hs.142926 Hs.458355 Hs.436683 Hs.314623 Hs.445445 Hs.292316 Hs.317466 Hs.118630 Hs.90012 Hs.23719 Hs.371278 Hs.2006 Hs.80986 Hs.151738
*morphogenesis (GO:0009653)*	Hs.79141 Hs.419756 Hs.8136 Hs.314623 Hs.2006 Hs.275243
*death (GO:0016265)*	Hs.443831
*regulation of gene expression, epigenetic (GO:0040029)*	Hs.292316
*regulation of physiological process (GO:0050791)*	Hs.419756 Hs.321142 Hs.8136 Hs.314623 Hs.445445 Hs.292316 Hs.118630 Hs.371278
*regulation of cellular process (GO:0050794)*	Hs.79141 Hs.443831 Hs.118630 Hs.275243
*organismal physiological process (GO:0050874)*	Hs.419756 Hs.278568 Hs.458355 Hs.16530
*cellular physiological process (GO:0050875)*	Hs.386532 Hs.369026 Hs.79141 Hs.443831 Hs.90336 Hs.292316 Hs.118630 Hs.23719 Hs.371278 Hs.80986 Hs.275243 Hs.193852
*response to stimulus (GO:0050896)*	Hs.419756 Hs.278568 Hs.458355 Hs.23719 Hs.16530 Hs.371278

Genes with GO but NOT at level 3 and ontology biological_process
Hs.286131	Hs.402525	Hs.410882

Genes without GO annotated
Hs.0	Hs.0	Hs.0	Hs.0	Hs.117176	Hs.170848	Hs.183704	Hs.246759	Hs.339841	Hs.351305
Hs.3737	Hs.380691	Hs.406682	Hs.439146	Hs.445174	Hs.446574	Hs.482144	Hs.499250	Hs.506199	Hs.510469
Hs.517787	Hs.521780	Hs.524221	Hs.524222	Hs.77385	Hs.7917	Hs.92991	Hs.99841	hAE1887_IMAGE_3703434

UniGene ClusterID of others versions
previous UniGene Cluster ID	current UniGene Cluster ID	Gene Ontology Term
Hs.102652
	Hs.0	No GO Term annotated
	Hs.339841	No GO Term annotated
	Hs.445445	*regulation of physiological process (GO:0050791)* *metabolism (GO:0008152)* *cell communication (GO:0007154)*
Hs.11482
	Hs.0	No GO Term annotated
	Hs.117176	No GO Term annotated
	Hs.142926	*metabolism (GO:0008152)*
	Hs.170848	No GO Term annotated
	Hs.180610	*metabolism (GO:0008152)*
	Hs.183704	No GO Term annotated
	Hs.2006	*morphogenesis (GO:0009653)* *metabolism (GO:0008152)*
	Hs.246759	No GO Term annotated
	Hs.275243	*regulation of cellular process (GO:0050794)* *morphogenesis (GO:0009653)* *cellular physiological process (GO:0050875)* *cell communication (GO:0007154)*
	Hs.286131	No GO Term annotated
	Hs.292316	*regulation of physiological process (GO:0050791)* *regulation of gene expression, epigenetic (GO:0040029)* *metabolism (GO:0008152)* *cellular physiological process (GO:0050875)*
	Hs.314623	*regulation of physiological process (GO:0050791)* *morphogenesis (GO:0009653)* *metabolism (GO:0008152)*
	Hs.317466	*metabolism (GO:0008152)*
	Hs.321142	*regulation of physiological process (GO:0050791)* *metabolism (GO:0008152)*
	Hs.351305	No GO Term annotated
	Hs.369026	*metabolism (GO:0008152)* *cellular physiological process (GO:0050875)*
	Hs.371278	*regulation of physiological process (GO:0050791)* *metabolism (GO:0008152)* *cellular physiological process (GO:0050875)* *response to stimulus (GO:0050896)*
	Hs.3737	No GO Term annotated
	Hs.380691	No GO Term annotated
	Hs.386532	*metabolism (GO:0008152)* *cellular physiological process (GO:0050875)*
	Hs.402525	No GO Term annotated
	Hs.406682	No GO Term annotated
	Hs.410882	No GO Term annotated
	Hs.416769	*metabolism (GO:0008152)*
	Hs.419756	*organismal physiological process (GO:0050874)* *regulation of physiological process (GO:0050791)* *morphogenesis (GO:0009653)* *metabolism (GO:0008152)* *cell communication (GO:0007154)* *response to stimulus (GO:0050896)*
	Hs.436683	*metabolism (GO:0008152)*
	Hs.439146	No GO Term annotated
	Hs.443458	*metabolism (GO:0008152)*
	Hs.443831	*regulation of cellular process (GO:0050794)* *cellular physiological process (GO:0050875)* *death (GO:0016265)*
	Hs.445174	No GO Term annotated
	Hs.446574	No GO Term annotated
	Hs.482144	No GO Term annotated
	Hs.499250	No GO Term annotated
	Hs.506199	No GO Term annotated
	Hs.510469	No GO Term annotated
	Hs.517787	No GO Term annotated
	Hs.77385	No GO Term annotated
	Hs.7917	No GO Term annotated
	Hs.80986	*metabolism (GO:0008152)* *cellular physiological process (GO:0050875)*
	Hs.90012	*metabolism (GO:0008152)*
	Hs.90336	*metabolism (GO:0008152)* *cellular physiological process (GO:0050875)*
	Hs.92991	No GO Term annotated
	Hs.99841	No GO Term annotated
Hs.169756
	Hs.0	No GO Term annotated
	Hs.193852	*cellular physiological process (GO:0050875)*
	Hs.458355	*organismal physiological process (GO:0050874)* *metabolism (GO:0008152)* *response to stimulus (GO:0050896)*
	Hs.524221	No GO Term annotated
	Hs.524222	No GO Term annotated
Hs.174185
	Hs.0	No GO Term annotated
	Hs.23719	*metabolism (GO:0008152)* *cellular physiological process (GO:0050875)* *cell communication (GO:0007154)* *response to stimulus (GO:0050896)*
	Hs.521780	No GO Term annotated

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