Results for UserSeq

Trusted matches - domains scoring higher than the gathering threshold

DomainStartEndBitsEvalueAlignment
zf-Dof158126.505e-34Align


zf-Dof: Dof domain, zinc finger [66 residues]

zf-Dof 1-58


Potential matches - Domains with Evalues above the cutoff

DomainStartEndBitsEvalueAlignment
rubredoxin2131.50 74Align
TFIIS136-13.70 60Align
GATA242-9.40 47Align


TFIIS: Transcription factor S-II (TFIIS) [66 residues]

TFIIS 1-36
zf-Dof 1-58
rubredoxin 2-13
GATA 2-42


Alignments of Pfam-A domains to HMMs

Format for fetching alignments to seed

Alignment of rubredoxin vs UserSeq/2-13

                   *->vCPvCGapKdqF<-*
                      +CP+C+ p ++F   
     UserSeq     2    KCPRCDSPNTKF    13   

Alignment of TFIIS vs UserSeq/1-36

                   *->fpCPkCKsrnttymelQTRsADEPpTvFykCkkCGkrwk<-*
                      ++CP C s nt +       +  P   ++ Ck+C   w    
     UserSeq     1    LKCPRCDSPNTKFCYYNNYNLSQP---RHFCKSCRRYWT    36   

Alignment of GATA vs UserSeq/2-42

                   *->egraCtnCytttTplWRrgpsqnmgre..LCnaCGLyyKkygqlr<-
                          C  C   +T+  + ++  n+ ++++ C +C+ y+ k g lr  
     UserSeq     2    ---KCPRCDSPNTKFCYYNNY-NLSQPrhFCKSCRRYWTKGGALR   42   

                   *
                    
     UserSeq     -   -    

Alignment of zf-Dof vs UserSeq/1-58

                   *->kpeealkcpRCdstntKFCYynnYslsqPRyfCkaCrRYWtkGGalR
                           lkcpRCds ntKFCYynnY+lsqPR+fCk+CrRYWtkGGalR
     UserSeq     1    -----LKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALR 42   

                   nvPvGggsRknkksss<-*
                   nvPvGggsRkn  ++s   
     UserSeq    43 NVPVGGGSRKNATKRS    58   


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