Table of contents Protein structure prediction
Protein structure prediction limits
Classical homology modeling algorithm
Alignments
Modeling loops and rotamers
Protein query
Practical homology modeling.
Databases of Folds
Structural comparisons
Organization of different databases
Superfolds
Structural comparison
Algorithms
DALI
Dynamic Programming
VASP (S. Bryant, NCBI)
Use of protein family information in protein structure and function prediction
Correlated mutations. General method.
Slide 19
Improving threading results with conservation, correlation and apolarity
Combining TOPITS with correlation
Especificidad funcional en la superfam’lia ras
Slide 23
El espacio de secuencias
Slide 25
Slide 26
Ab initio prediction of binding sites
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