NDB ID: BDL001
Features
B-DNA double helix
Compound name
5'-d(CpGpCpGpApApTpTpCpGpCpG)-3', 290 K
Sequence in asymmetric unit
-
Chain A: C G C G A A T T C G C G
-
Chain B: C G C G A A T T C G C G
Citation
H.R. Drew, R.M. Wing, T. Takano, C. Broka, S. Tanaka, K. Itakura, R.E.
Dickerson
Structure of a B-DNA Dodecamer. Conformation and Dynamics
Proc. Nat. Acad. Sci. USA,78, pp. 2179-2183, 1981.
Space group
P212121
Cell constants
A = 24.870 B = 40.390 C = 66.200 (Ångstroms)
alpha = 90.00 beta = 90.00 gamma = 90.00 (degrees)
Crystallization conditions
-
Method: vapor diffusion
-
Solution: nucleic acid, water, magnesium acetate, spermine HCl
-
Reservoir: MPD, water
Refinement
The structure was refined using the Jack-Levitt program. The R value is
17.8 for 2725 reflections in the resolution range 8.0 to 1.9 Å with
I > 2.0 sigma(I).
Coordinates
The coordinates
for the asymmetric unit of this structure are stored in the NDB archive.
Views of BDL001
One
view of this structure
Space-filling
packing picture of BDL001
A
ribbon representation of the packing of BDL001
©1995,1996 The Nucleic Acid Database Project
Rutgers, The State University of New Jersey