Predictions for request hmgl

             : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181-------191-------201-------211-------221-------231-------241-------251-------261-------271-------281-------291-------301-------311-------321-- :
OrigSeq      : MAAMRKALPRRLVGLASLRAVSTSSMGTLPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDHTEVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALTNTLMALQMGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIHTGVNLQKLLEAGNFICQALNRKTSSKVAQATCKL : OrigSeq

dsc          : --------------------------------EEEEEHHHHHHHH---EEHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH--HHH-------HHHHHHHHHHHHHHHHH------EEE-------HH--HH--HHHHHHHHHHHHHHHHHH-------EEEEE---------HHHHHHHHHHHHHH----EEE---------HHHHHHHHHHHH------EEEE-------HHHHHHHHHH----HHEEEE----------------HHHHHHHHHH----------HHHHHHHHHHHHH---------------- : dsc
jalign       : -------------------------------EEEEEEE-----------HHHHHHHHHHHHHHH-----EEEE--------HHHHHHHHHHHHH------EEEEHH------HHHHHHH----EEEEE---HHHHHHHH---HHHHHHHHHHHHHHHHHH-------EEEEEE------HHHHHHHHHHHHHHH----EEEE---------HHHHHHHHHHHH-----EEEE-----HHHHHHHHHHHHH----EEEEEE---------H-----HHHHHHHHHHHHH-H-----HHHHHHHHHHHHHHH--------------- : jalign
jfreq        : -HHHHHH---HHHHHHHH-------------EEEEEE---------------HHHHHHHHHHHHH----EEEE--------------HHHHHHHHHH-----HHHHHHHHHHHHHHHHH----EEEE----HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--EEEE----------HHHHHHHHHHHHH----EEEEE--------HHHHHHHHHHHH-------EE------HHHHHHHHHHHHH---EEEEEE----------------HHHHHHHHH---------HHHHHHHHHHHHHHHH-------HHHHHHH- : jfreq
jhmm         : --------------------------------EEEEE---------------HHHHHHHHHHHHHH---EEEE-------HHHHHHHHHHHHHH-------EEEEE---HHHHHHHHHH--HHHEHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH---EEE-EEEEEE---------HHHHHHHHHHHHHH---EEE---------HHHHHHHHHHHHH----------------HHHHHHHHHHH-HH-HHHHEE----------------HHHHHHHHHHH--------HHHHHHHHHHHHHHH--------------- : jhmm
jnet         : -HHHHHH---HHHHH----------------EEEEEEE--------------HHHHHHHHHHHHH----EEEE-------------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH---EEEEE----HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--EEEEE---------HHHHHHHHHHHHH----EEEE--------HHHHHHHHHHHHHH-------------HHHHHHHHHHHHHH---EEEEEE---------------HHHHHHHHHHH--------HHHHHHHHHHHHHHHH-------HHHHHHH- : jnet
jpssm        : -HHHHHHHHHHHHH----EEEEHH-------EEEEEEE--------------HHHHHHHHHHHHHH---EEEE--------------HHHHHHHHHHH----HHHHHHHHHHHHHHHH----EEEEE----HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH---EEEE---------HHHHHHHHHHHHH----EEEE--------HHHHHHHHHHHHHHH-------------HHHHHHHHHHHHH---EEEEEE----------------HHHHHHHHH----------HHHHHHHHHHHHHHH--------------- : jpssm
mul          : --------------------------------EEEEE------H-------HHHHHHHHHHHHHHH-HEEEE-----------HHHHHHH-HH-H-----HHHHHHH-----HHHHHHH-HHHHEEEH-----HHHHHHHH-HHHHHHHHHHHHHHHH----------EEEEHHH------HHHHHHHHHHHHHH---EEE------------HHHHHHHHHHHH---HHHEH------HHHH--HHHHHH----EEEE------------------HHHHHHHHHHH-------HHHHHHHHH-HHHHH--------------- : mul
phd          : -------------------------------EEEEEE---------------HHHHHHHHHHHHH---EEEEE--------HHHHHHHHHEE---------EEEEEEE---HHHHHHH----EEEEEEE----HHHHH----HHHHHHHHHHHHHHHHH-----EEEEEEEEE-------HHHHHHHHHHHHHHH---EEEEE--------HHHHHHHHHHHHH----EEEEE----HHHHHHHHHHHHHH---EEEEEEE---------------HHHHHHHHHHHH-------HHHHHHHHHHHHHHH--------------- : phd
pred         : ----------HHHHHH---------------EEEEEE-------------HHHHHHHHHHHHHHH----EEEE-----------HHHHHHHHHHHHH---------HHHHHHHHHHHHH---EEEEE----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHH---EEEEE----------HHHHHHHHHHHH-----EEEE------HHHHHHHHHHHH----EEE----------------HHHHHHHHHHHHH--------HHHHHHHHHHHHHHH-------HHHHH--- : pred

Jpred        : -------------------------------EEEEEE---------------HHHHHHHHHHHHH----EEEE-----------HHHHHHHHHH-------HHHHHHHHHHHHHHHHHH---EEEEE----HHHHHHHH---HHHHHHHHHHHHHHHHHH--HHH--EEEEE---------HHHHHHHHHHHHH----EEEE---------HHHHHHHHHHHH-------EE------HHHHHHHHHHHHH---EEEEEE----------------HHHHHHHHHH---------HHHHHHHHHHHHHHH--------------- : Jpred


PHDHtm       : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : PHDHtm
MCoil        : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : MCoil
MCoilDI      : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : MCoilDI
MCoilTRI     : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : MCoilTRI
Lupas 21     : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 14     : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 28     : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

PHDacc       : -----BBBBBB-B-U-BB-BBBBBBBB-B--BBBBB-BBB-----B--BBB-B---B-BB-BB--BBB-BB-BBB-BBB--BB-BB--BBB--BU-----BBBBBBUBB---B-BBB-BBB-BBBBBBBBB-BBB---B---B--BB-BB--BB-BB--UBB-BUBBBBBBBBB--BB-B-B-BBB-BB-BBB-BBB-BBBBB-BBBBBB---BU-BB--B---B--BBBBBBBB--BBBBBBBBBBBB-BBB-BB-BBBBBB-BB-UB--UB--BBB-BBBBBB-BB-BUB-B-B--BB-BB-BBBB-BB-U-B--B--BB--- : PHDacc
Jnet_25      : ---B---B---BBBB-BB--------------B-BBBBBBBBB-BBB-B-B-B--BB-BB-BBB-BBB-BBBBBBBBBB-BBB-BB---BBB--B------BBBBBBB---BB-BBB-B-B--BBBBB-BB-BBB--BB-B-B--BB-BB--BB-BB--BBB-B-BBBBBBBBB-BB-BBBB-BBB-BB-BB--BBB-BBBBBBBBBBBBB--BB-BB--BB--B--B-BBBBBBBBBBBBBBBBBBBB-BBB-BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB--B-B---B-B--B--BB-BBB-BB----B---B-BBBBB : Jnet_25
Jnet_5       : --------------------------------B-B-BBB---B------------B--BB--B---BB--BBB-BBB----B----------------------BB------B--B-------B-BBB-----BB----------B---B--BB--B------B---B-BBB-B--B-------B--BB--B----B--BBB-BBBBBB----B---B--B----------B-B----BBBBBBBBBBB--BB--B-BBBBB---B--B---B--B--B-BBBBB-------------B--B---B----------------B-- : Jnet_5
Jnet_0       : ----------------------------------B-------B----------------B--B----------------------------------------------------B-------B-B-------------------B---B------B---------------------------B--BB--B-------------B-------B------B-------------------B--BB--BB--B---B------------------------BB--B-------------B------B------------------- : Jnet_0

PHD Rel      : 9989988887777777787788766667787279985145677666643234566899999998559827996155578522345654321022357999213477512311356755164513799852531233222444479999999999999974994122156997337777413799999999999927954676155565581479999999999179981665427631368999999998288512478513578975312246436999999997622323332147888999999999167777776556899 : PHD Rel
Pred Rel     : 0070770670588670565755079007898690896666787777768755688999999998869968865878989986678678888888885668876565867877888888676656667777668888888885888888899899989888587755555556789988887788899999999869658886898866787778888999888588866667688997667888888888676555557666777978898777678898996888666866666677788888888886899997757677000 : Predator Rel
Jnet Rel     : 8789886142133100111245341568887479997046888867787365889999999987827981863577654331012215899999876223023444556999999986299758874266278888651687789999999999999996026517435994368999751799999999988329958997187435664999999999986278996101788870759999999987389757788312588877867889707999999713589778882078799999999983788898725565207 : Jnet Rel


  


Notes


Key:
consv      - Conservation number (+) = 0; (-) = 10
phd        - PHD prediction
dsc        - DSC prediction
pred       - PREDATOR prediction 
nnssp      - NNSSP prediciton 
zpred      - Zpred prediction 
mul        - Mulpred prediction
jnet       - Jnet prediction
jalign     - Jnet alignment prediction
jhmm       - Jnet hmm profile prediction
jpssm      - Jnet PSIBLAST pssm profile prediction
jfreq      - Jnet PSIBLAST frequency profile prediction
Jpred      -  Consensus prediction over all methods

PHDacc     - Solvent Accessibility

PHD Rel    - PHD Reliability
PRED Rel   - Predator Reliability
NNSSP Rel  - NNSSP Reliability
PHDHtm     - PHD transmembrane prediction
MCoil      - MultiCoil prediction (+ Dimer and trimer predictions)
Lupas      - Lupas Coil prediction (21,14,and 28 window sizes)

Note on coiled coil predictions  - = < 50% probability
				 c = >50% <90% probability
				 C = >90% probability