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reference predict_h6925 (Nov 23, 2002 10:08:21) reference pred_h6925 (Nov 23, 2002 10:06:45) PPhdr from: mjgommo@cnb.uam.es PPhdr resp: MAIL PPhdr orig: HTML PPhdr want: HTML PPhdr password(###) prediction of: - default prediction of: - PROFsec PROFacc PROFhtm ProSite SEG ProDom COILS NLS return msf format ret html ret store # default: single protein sequence description=test-1 MTSNSDGSSTSPVEKPITGDVETNEPTKPIRRLSTPSPEQDQEGDFEEEDDDDKFSVSTSTPTPTITKTK
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Pattern-ID: CAMP_PHOSPHO_SITE PS00004 PDOC00004
Pattern-DE: cAMP- and cGMP-dependent protein kinase phosphorylation site
Pattern: [RK]{2}.[ST]
31 RRLS
Pattern-ID: CK2_PHOSPHO_SITE PS00006 PDOC00006
Pattern-DE: Casein kinase II phosphorylation site
Pattern: [ST].{2}[DE]
3 SNSD
11 SPVE
prot (#) default: single protein sequence description=test-1 /home/phd/server/work/predict_h6925 from: 1 to: 70 prot (#) default: single protein sequence description=test-1 /home/phd/server/work/predict_h6925 /home/phd/server/work/predict_h6925.segNormGcg Length: 70 11-Jul-99 Check: 2818 .. 1 MTSNSDGSST SPVEKPITGD VETNEPTKPI RRLSTPSPxx xxxxxxxxxx 51 xxxKFSVxxx xxxxxxxxxx
Identities computed with respect to: (query) prot Colored by: consensus/70% and property
HSP processing: ranked
1 [ . . . . : . ] 70
prot (#) default: single protein... score P(N) N 100.0% MTSNSDGSSTSPVEKPITGDVETNEPTKPIRRLSTPSPEQDQEGDFEEEDDDDKFSVSTSTPTPTITKTK
1 PD066221 p2001.3 (1) // METABOLISM R... 361 7.4e-43 1 98.6% MTSNSDGSSTSPVEKPITGDVETNEPTKPIRRLSTPSPEQDQEGDFDEEDDDDKFSVSTSTPTPTITKTK
2 PD043087 p2001.3 (2) // CDNA FOR COD... 46 2.3e-05 3 40.7% -----------PSQVPVTGGVAADEPPPPRRNQSPEDPEYSAASPSEDEDDDDSFVVGDDEPIEEFRKTK
3 PD082685 p2001.3 (1) // STIMULATED T... 45 2.8e-05 3 33.8% -----DGESTSPSKKDVDDDGEEKELMERLKKLSVPTSDEEDE-DNEEEDKEEEIIKEKEPPKQGKEKAK
4 PD121710 p2001.3 (2) // PIP82 38 3.4e-05 4 40.7% -------------------------------------------GQIQEEDNEEDFKEQTSWPAPALYKPK
5 PD140654 p2001.3 (1) // DROSOPHILIA ... 42 4.2e-05 3 34.5% ---SSDANSDDPFSKPI--------PDVPVNQLSSP----------EEEDDEDEKTISSSS---------
6 PD143269 p2001.3 (1) // KINASE ATP-B... 45 0.00014 2 32.6% -----------------------SEPGVPVPLRSMSDPDPDPDQDFDKEPDSDSTKHSLRPTAPTL----
7 PD043849 p2001.3 (3) // PHORBOL-ESTE... 56 0.00015 3 39.7% -------STGEPIQKYSANGTEANDPSKPHERPTTP--------DVEFDDDIDAISNSSLTPTPT-----
8 PD324386 p2001.3 (1) // 5 GENOMIC CL... 44 0.00015 3 33.9% MLSQINGSHITRVSKPVSSRVDSDERTRSVKSFVTPPTESKSESSYPPQNDDSVSEVSTSPP--------
9 PD281326 p2001.3 (1) // W02H5.M 31 0.00015 3 23.5% MSGSSNGSST--------------DPSTPNRSAQSPRP---------------------SSPTPRVQK--
10 PD139064 p2001.3 (1) // PIP1-GLN3 48 0.00015 3 34.3% -SNTSEGNSTTTINNDQSSNEQTDEKILDIERVTTTS-DNDHDDDYDDDDDDDESEFSTITPTNSFTK--
11 PD355925 p2001.3 (2) // HELICASE ATP... 57 0.00026 2 29.6% ----------------VNGEINNNNPTPKLKKNKKPAPKSDLSETAEQCDGE-------STPTPKKVKKK
12 PD220269 p2001.3 (11) PAPB(2) // POL... 43 0.00028 3 27.1% VNSPTDSSKTSPL-------------TPTTAQLSAPRPPDKNGLETEERKSVESISTTESMPIPTIDTSR
13 PD323585 p2001.3 (1) // CG18670 54 0.00030 2 30.5% ------GGSSSSPNKRVKKERSTRRNQKPTAAARRLPVANSSEDEDEEDDDDDSEEAEEILPTPT-----
14 PD069530 p2001.3 (1) // CYCLIN CELL ... 62 0.00031 2 34.4% -TAPSNGEVSSSIVVVVSSSSISSSSDSPIAILPHPSYDEDDEDDVEEEDDDVEIYSSTISP--------
15 PD323352 p2001.3 (1) // DOMAIN OF UN... 31 0.00037 4 75.0% --------------------------------LSAPSPVQ------------------------------
16 PD462719 p2001.3 (1) // FACTOR INITI... 49 0.00038 2 35.9% ----ADGSGPSPNMKRRKGSVMSVGSAHPLRQTSFPPDEKDQQGGQQEDQDDDEGPTEVAATADTLTK--
17 PD335301 p2001.3 (4) // FACTOR MOTIF... 43 0.00044 2 37.5% --SGSDGESDGPID-------QENDLSQMARPLTTPSPSQMQ----------------------------
18 PD129403 p2001.3 (1) // COSMID C46A5 49 0.00046 2 34.5% ----------SPTNDPIENDQETDEKTK---RRTSAKKKEEKQKETETFDADKNENPSTPTAPPTMTR--
19 PD327899 p2001.3 (1) // CG14858 49 0.00054 3 36.9% MRSVSEDSGAKTTPKPVT--VETSSSSELDFRCSTQHGRQQQQSQYSVEDEDEDLSNATTTPTAT-----
20 PD144602 p2001.3 (1) // ZINC-FINGER ... 42 0.00056 3 33.3% -TTNTTSMSVEPTDPRSAGESSSDSEPDTIEQLKAEQREQDDDGDVELDDDDDDEIQEISTPAP------
21 PD264467 p2001.3 (1) // ATP-BINDING ... 42 0.00061 2 32.1% -------SAESTEQQPDTVVKEEKEGKDPMEVDSGDGKKQEQDGEAVKEEDDDDDSLNKS----------
22 PD110063 p2001.3 (2) // YEAST DNA IS... 56 0.00063 2 26.5% -STSTDGSETNKNEQGNSLEVITSEPVKLEQPINENSNVEEAEKDYQPSEKDDKSLIGGILSTVEMTQS-
23 PD049700 p2001.3 (1) // REGULATION T... 66 0.00063 2 32.3% ISNNSQGKKSKLIQRQIDNDDEGTESSDYQAVTDGEESENEEEESEEEEEDDDELSLSTSLP--------
24 PD338567 p2001.3 (3) // DNA POLYMERA... 48 0.00065 2 35.6% -------------------------PEKTPAKKATEDPFSDNEMDFSCLDDDEQFDVEKTQQTEKVSQTK
25 PD323923 p2001.3 (1) // HOMOLOG REGU... 41 0.00071 3 37.5% ---------TTPLPPPRLADVAPTPPKTPARKRGEEGTERDEEEEKKEEEEKDK----TSPPTPT-----
26 PD125778 p2001.3 (6) // PUMILIO DEVE... 76 0.00074 1 35.6% -----------------TRDAETDDNDKGDQKGKASPFEEDQNGDLKQEDDDDQKTNGRGVP--------
27 PD323331 p2001.3 (1) // ENDOGLYCAN 39 0.00081 3 32.7% ------------------GSIEDTSQAQELPNLPSPLPPREEEEEEEEEEEREKFSLTSSSQTPGATKSR
28 PD215110 p2001.3 (6) // PLASMID AGGR... 41 0.00099 3 44.2% VTSNGDGSES---EKPKTPDLEQEKPLDP--QLTPPTPEELKE---------------------------
29 PD293112 p2001.3 (1) // CG13648 36 0.0010 3 38.6% -----DDSSTTEIVEITTPESATSVPAKGIKIVTTPEPEGSGEED-KEITEDELIKVSTSAP--------
consensus/100% ......................................................................
consensus/90% ......................................................................
consensus/80% ................................hst....t..t.t.p..pppp....t............
consensus/70% .....................tpp.sp..tthssststpptptp.ppp-c--p...tpt.s.......
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--- ------------------------------------------------------------ --- --- Again: these results were obtained based on the domain data- --- base collected by Daniel Kahn and his coworkers in Toulouse. --- --- PLEASE quote: --- F Corpet, J Gouzy, D Kahn (1998). The ProDom database --- of protein domain families. Nucleic Ac Res 26:323-326. --- --- The general WWW page is on: ---- --------------------------------------- --- http://www.toulouse.inra.fr/prodom.html ---- --------------------------------------- --- --- For WWW graphic interfaces to PRODOM, in particular for your --- protein family, follow the following links (each line is ONE --- single link for your protein!!): --- http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD066221 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD066221 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD066221 ==> graphical output of all proteins having domain PD066221 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD043087 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD043087 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD043087 ==> graphical output of all proteins having domain PD043087 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD082685 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD082685 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD082685 ==> graphical output of all proteins having domain PD082685 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD140654 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD140654 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD140654 ==> graphical output of all proteins having domain PD140654 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD143269 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD143269 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD143269 ==> graphical output of all proteins having domain PD143269 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD043849 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD043849 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD043849 ==> graphical output of all proteins having domain PD043849 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD324386 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD324386 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD324386 ==> graphical output of all proteins having domain PD324386 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD281326 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD281326 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD281326 ==> graphical output of all proteins having domain PD281326 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD139064 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD139064 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD139064 ==> graphical output of all proteins having domain PD139064 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD355925 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD355925 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD355925 ==> graphical output of all proteins having domain PD355925 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD220269 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD220269 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD220269 ==> graphical output of all proteins having domain PD220269 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD323585 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD323585 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD323585 ==> graphical output of all proteins having domain PD323585 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD069530 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD069530 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD069530 ==> graphical output of all proteins having domain PD069530 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD462719 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD462719 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD462719 ==> graphical output of all proteins having domain PD462719 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD335301 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD335301 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD335301 ==> graphical output of all proteins having domain PD335301 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD129403 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD129403 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD129403 ==> graphical output of all proteins having domain PD129403 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD327899 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD327899 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD327899 ==> graphical output of all proteins having domain PD327899 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD144602 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD144602 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD144602 ==> graphical output of all proteins having domain PD144602 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD264467 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD264467 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD264467 ==> graphical output of all proteins having domain PD264467 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD110063 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD110063 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD110063 ==> graphical output of all proteins having domain PD110063 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD049700 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD049700 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD049700 ==> graphical output of all proteins having domain PD049700 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD338567 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD338567 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD338567 ==> graphical output of all proteins having domain PD338567 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD323923 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD323923 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD323923 ==> graphical output of all proteins having domain PD323923 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD125778 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD125778 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD125778 ==> graphical output of all proteins having domain PD125778 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD323331 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD323331 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD323331 ==> graphical output of all proteins having domain PD323331 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD215110 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD215110 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD215110 ==> graphical output of all proteins having domain PD215110 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD293112 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD293112 http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD293112 ==> graphical output of all proteins having domain PD293112 --- --- NOTE: if you want to use the link, make sure the entire line --- is pasted as URL into your browser! --- --- END of PRODOM --- ------------------------------------------------------------
--- ------------------------------------------------------------ --- PSI-BLAST multiple sequence alignment --- ------------------------------------------------------------ --- --- PSI-BLAST ALIGNMENT HEADER: ABBREVIATIONS FOR SUMMARY --- SEQLENGTH : 70 --- ID : identifier of aligned (homologous) protein --- LSEQ2 : length of aligned sequence --- IDE : percentage of pairwise sequence identity --- SIM : percentage of similarity --- LALI : number of residues aligned --- LGAP : number of residues in all indels --- BSCORE : blast score (bits) --- BEXPECT : blast expectation value --- OMIM : OMIM (Online Mendelian Inheritance in Man) ID --- PROTEIN : one-line description of aligned protein --- '!' : indicates lower scoring alignment that is combined --- with the higher scoring adjacent one --- --- PSI-BLAST ALIGNMENT HEADER: SUMMARY ID LSEQ2 IDE SIM LALI LGAP BSCORE BEXPECT PROTEIN swiss|P07249|ARG1_YEAST 177 73 73 57 0 67 2e-11 Arginine metabolism regul --- --- PSI-BLAST ALIGNMENT
--- ------------------------------------------------------------ --- MAXHOM multiple sequence alignment --- ------------------------------------------------------------ --- --- MAXHOM ALIGNMENT HEADER: ABBREVIATIONS FOR SUMMARY --- ID : identifier of aligned (homologous) protein --- STRID : PDB identifier (only for known structures) --- IDE : percentage of pairwise sequence identity --- WSIM : percentage of weighted similarity --- LALI : number of residues aligned --- NGAP : number of insertions and deletions (indels) --- LGAP : number of residues in all indels --- LSEQ2 : length of aligned sequence --- ACCNUM : SwissProt accession number --- OMIM : OMIM (Online Mendelian Inheritance in Man) ID --- NAME : one-line description of aligned protein --- --- MAXHOM ALIGNMENT HEADER: SUMMARY ID STRID IDE WSIM LALI NGAP LGAP LSEQ2 ACCNUM NAME arg1_yeast 99 100 70 0 0 177 P07249 ARGININE METABOLISM REGUL l52_ade05 37 45 59 2 32 415 P04496 LATE L1 52 KDA PROTEIN. --- --- MAXHOM ALIGNMENT: IN MSF FORMAT
--- --- Version of database searched for alignment: --- SWISS-PROT release 39.0 (5/00) with 85 249 proteins ---
Identities computed with respect to: (1) predict_h6920 Colored by: consensus/70% and property
1 [ . . . . : . ] 70
1 predict_h6920 100.0% MTSNSDGSSTSPVEKPITGDVETNEPTKPIRRLSTPSPEQDQEGDFEEEDDDDKFSVSTSTPTPTITKTK
2 arg1_yeast 98.6% MTSNSDGSSTSPVEKPITGDVETNEPTKPIRRLSTPSPEQDQEGDFDEEDDDDKFSVSTSTPTPTITKTK
3 l52_ade05 35.6% ----ASGGATSAVDAAADGDYEplEEGEGLARLGAPSPerDREGEEPEEMRDRKFHAGRELRH-------
consensus/100% ....usGuuTSsV-tshsGDhEs.E.scsltRLusPSPEpDpEG-..EE.cDcKFpsupph.p.......
consensus/90% ....usGuuTSsV-tshsGDhEs.E.scsltRLusPSPEpDpEG-..EE.cDcKFpsupph.p.......
consensus/80% ....usGuuTSsV-tshsGDhEs.E.scsltRLusPSPEpDpEG-..EE.cDcKFpsupph.p.......
consensus/70% ....usGuuTSsV-tshsGDhEs.E.scsltRLusPSPEpDpEG-..EE.cDcKFpsupph.p.......
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PROF predictions for predict_h6925 (/home/phd/server/work/predict_h6925.fast) |
SYNOPSIS of prediction for predict_h6925 (/home/phd/server/work/predict_h6925.fast) |
| sec str type | H | E | L | % in protein | 0 | 14.29 | 85.71 |
| accessib type | b | e |
| % in protein | 8.57 | 91.43 |
HEADER information |
| prot_id | predict_h6925 |
| prot_name | /home/phd/server/work/predict_h6925.fast |
| prot_nres | 70 |
| prot_nali | 2 |
| prot_nchn | 1 |
| prot_nfar | 1 |
| ali_orig | /home/phd/server/work/predict_h6925.hsspMax4phd |
| %A: 0.0 | %C: 0.0 | %D: 11.4 | %E: 11.4 | %F: 2.9 |
| %G: 4.3 | %H: 0.0 | %I: 4.3 | %K: 7.1 | %L: 1.4 |
| %M: 1.4 | %N: 2.9 | %P: 11.4 | %Q: 2.9 | %R: 2.9 |
| %S: 14.3 | %T: 17.1 | %V: 4.3 | %W: 0.0 | %Y: 0.0 |
| prof_fpar | acc=/home/phd/server/pub/prof/net/PROFboth_best.par |
| prof_nnet | acc=6 |
| AA : | amino acid sequence |
| PROF_sec: | PROF predicted secondary structure: H=helix, E=extended (sheet), blank=other (loop) PROF = PROF: Profile network prediction HeiDelberg |
| Rel_sec: | reliability index for PROFsec prediction (0=low to 9=high) Note: for the brief presentation strong predictions marked by '*' |
| SUB_sec: | subset of the PROFsec prediction, for all residues with an expected average accuracy > 82% (tables in header) NOTE: for this subset the following symbols are used: L: is loop (for which above ' ' is used) .: means that no prediction is made for this residue, as the reliability is: Rel < 5 |
| pH_sec: | 'probability' for assigning helix (1=high, 0=low) |
| pE_sec: | 'probability' for assigning strand (1=high, 0=low) |
| pL_sec: | 'probability' for assigning neither helix, nor strand (1=high, 0=low) |
| P_2_acc: | PROF predicted relative solvent accessibility (acc) in 2 states: b = 0-16%, e = 16-100%. |
| P_3_acc: | PROF predicted relative solvent accessibility (acc) in 3 states: b = 0-9%, i = 9-36%, e = 36-100%. |
| PROF_acc: | PROF predicted relative solvent accessibility (acc) in 10 states: a value of n (=0-9) corresponds to a relative acc. of between n*n % and (n+1)*(n+1) % (e.g. for n=5: 16-25%). |
| Rel_acc: | reliability index for PROFacc prediction (0=low to 9=high) Note: for the brief presentation strong predictions marked by '*' |
| SUB_acc: | subset of the PROFacc prediction, for all residues with an expected average correlation > 0.69 (tables in header) NOTE: for this subset the following symbols are used: I: is intermediate (for which above ' ' is used) .: means that no prediction is made for this residue, as the reliability is: Rel < 4 |
| ali_orig: | input file |
| prof_fpar: | name of parameter file, used [w] |
| prof_nnet: | number of networks used for prediction [d] |
| prof_skip: | note: sequence stretches with less than 9 are not predicted, the symbol '*' is used! |
BODY with predictions for predict_h6925 (/home/phd/server/work/predict_h6925.fast) |
PROF results (normal)....,....1....,....2....,....3....,....4....,....5....,....6....,....7 AA MTSNSDGSSTSPVEKPITGDVETNEPTKPIRRLSTPSPEQDQEGDFEEEDDDDKFSVSTSTPTPTITKTK PROF_sec EEE EEEE EEE Rel_sec 9125666544544242245401687765513437766533677887731014403442136763032238 SUB_sec L..LLLLL..L.......L...LLLLLLL....LLLLL..LLLLLLL.............LLL......L P_3_acc eeee eeeee e eee eee eeeeeeebee eee eee eeee eeeeeeeebe eeeee ebeeee Rel_acc 3010030200232343331210342734432312211130147021411242383311332321213218 SUB_acc ..............e........e.e.ee............ee...e...e..e...............e
PROF results (detail) ....,....1....,....2....,....3....,....4....,....5....,....6....,....7 AA MTSNSDGSSTSPVEKPITGDVETNEPTKPIRRLSTPSPEQDQEGDFEEEDDDDKFSVSTSTPTPTITKTK pH_sec 1.0 pH_sec 0.9 pH_sec 0.8 pH_sec 0.7 pH_sec 0.6 pH_sec 0.5 pH_sec .. 0.4 pH_sec . . ... ..... 0.3 pH_sec .................... . .... .......... .. .. 0.2 ---------------------------------------------------------------------- pE_sec 1.0 pE_sec 0.9 pE_sec 0.8 pE_sec .. .. . 0.7 pE_sec ... .... ... 0.6 pE_sec . ... .... .... 0.5 pE_sec .. . .. .... ...... .... 0.4 pE_sec .. .. ...... ... .... . .. ....... ...... 0.3 pE_sec ...................... ................ . .... ................. 0.2 ---------------------------------------------------------------------- pL_sec . . 1.0 pL_sec . ... .. ...... . 0.9 pL_sec . ... . . ....... .... ....... ... . 0.8 pL_sec . ......... . ... ....... ...... ....... .. .... .. 0.7 pL_sec ................ ... ........ ................ ... ..... .. 0.6 pL_sec .............................. ...................... ....... .. 0.5 pL_sec .............................. ....................... ........ .... 0.4 pL_sec ...................................................................... 0.3 pL_sec ...................................................................... 0.2 ---------------------------------------------------------------------- PROF_acc . . .. . .. .. . .. . .. . . . 100% PROF_acc . ..... . .. .... ... . .... . ..... .... .. 81% PROF_acc . ..... . ... ... ....... ... . .... ........ ..... .. 64% PROF_acc .... ..... . ... ... ....... .. ... ... .... ........ . ..... . .... 49% PROF_acc .......... . ... ... ........ .. ............ ........ .......... .... 36% PROF_acc ............ ... ............ .. ..................... .......... .... 25% PROF_acc ............................. ........................ .......... .... 16% PROF_acc ................................................................. .... 9% PROF_acc ...................................................................... 4% ----------------------------------------------------------------------
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--- --- GLOBE: prediction of protein globularity --- --- nexp = 64 (number of predicted exposed residues) --- nfit = 37 (number of expected exposed residues --- diff = 27.00 (difference nexp-nfit) --- =====> your protein appears not to be globular --- --- --- GLOBE: further explanations preliminaryily in: --- http://www.columbia.edu/~rost/Papers/98globe.html --- --- END of GLOBE
END of results for file predict_h6925
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