var noMatchHighLight=0; var noHighLight=1; var browser=navigator.appName; var ver=navigator.appVersion; var intver=parseInt(ver); function checkBrowser() { if (noHighLight=0 && browser != 'Netscape' || intver<5) { noMatchHighLight=1; //alert("WARNING:\nMatches/Features highlighting on sequence deactivated.\n\n(javascript too slow or too old)\nHighlighting only enabled with a \nrecent Mozilla/FireFox/Netscape browser"); } } function highLightOn() { noHighLight=0; } function highLightOff() { noHighLight=1; } function matchHighLightOn() { noMatchHighLigh=0; } function matchHighLightOff() { noMatchHighLigh=1; } function userman(section, anchor) { if (anchor==null) anchor=""; window.open("http://www.expasy.org/cgi-bin/userman.cgi?"+escape(section)+anchor,"userman","toolbar=no,directories=no,location=no,status=yes,scrollbars=yes,resizable=yes,width=600,height=400"); } function HighLight(id,color,start,stop,isnotrange) { this.id=id; this.color=color; this.start=start; this.stop=stop; this.isnotrange=isnotrange; } var prevMatchOnSeq= new HighLight(); var prevFeatureOnSeq= new HighLight(); var prevFeatureOnMatchSeq= new HighLight(); var prevMatchOnSeqColor=''; function clearMatchOnSeq() { if (noHighLight || !prevMatchOnSeq.id) return; for (var i=prevMatchOnSeq.start; i<=prevMatchOnSeq.stop; i++) { var e=document.getElementById(prevMatchOnSeq.id+'_'+i); if (e) e.style.backgroundColor=''; } } function clearFeatureOnSeq(match_id) { if (noHighLight || !prevFeatureOnSeq.id || !prevMatchOnSeqColor) return; for (var i=prevFeatureOnSeq.start; i<=prevFeatureOnSeq.stop; i++) { var e=document.getElementById(prevFeatureOnSeq.id+'_'+i); if (e && (prevFeatureOnSeq.isnotrange || i==prevFeatureOnSeq.start || i==prevFeatureOnSeq.stop)) e.style.backgroundColor=prevMatchOnSeqColor; } } function clearFeatureOnMatchSeq() { if (noHighLight || !prevFeatureOnMatchSeq.id) return; for (var i=prevFeatureOnMatchSeq.start; i<=prevFeatureOnMatchSeq.stop; i++) { var e=document.getElementById(prevFeatureOnMatchSeq.id+'_'+i); if (e && (prevFeatureOnMatchSeq.isnotrange || i==prevFeatureOnMatchSeq.start || i==prevFeatureOnMatchSeq.stop)) e.style.backgroundColor=''; } } function highlightSpanRange(id,isnotrange,start,stop,color,type) {// highlight some sequence (span elem with id=id_start to id_stop) //type:0 match on seq highligt, 1 feature on seq highlight, 2 feature on matchseq highlight // must highlight 1st match on seq (type 0) then feature on seq then feature on matchseq... if (noHighLight || (type!=2 && noMatchHighLight)) return;// skip highlighting on main sequence if bad browser... // check if highlight already exists if (type==0 && prevMatchOnSeq.id==id && prevMatchOnSeq.start==start && prevMatchOnSeq.stop==stop && prevMatchOnSeq.color==color) {prevMatchOnSeq.color=color;return;} else if (type==1 && prevFeatureOnSeq.id==id && prevFeatureOnSeq.start==start && prevFeatureOnSeq.stop==stop && prevFeatureOnSeq.color==color) return; else if (type==2 && prevFeatureOnMatchSeq.id==id && prevFeatureOnMatchSeq.start==start && prevFeatureOnMatchSeq.stop==stop && prevFeatureOnMatchSeq.color==color) return; // new highlight: delete old one if (type==0) {clearMatchOnSeq();clearFeatureOnMatchSeq();prevMatchOnSeqColor='';} else if (type==1) {clearFeatureOnSeq();prevMatchOnSeqColor=prevMatchOnSeq.color;} else if (type==2) clearFeatureOnMatchSeq(); // highlight range: for (var i=start; i<=stop; i++) { var e=document.getElementById(id+'_'+i); if (e && (isnotrange || i==start || i==stop)) e.style.backgroundColor=color; } if (type==0) { prevMatchOnSeq.id=id;prevMatchOnSeq.color=color; prevMatchOnSeq.start=start;prevMatchOnSeq.stop=stop; } else if (type==1) { prevFeatureOnSeq.id=id;prevFeatureOnSeq.color=color; prevFeatureOnSeq.start=start;prevFeatureOnSeq.stop=stop; prevFeatureOnSeq.isnotrange=isnotrange; } else if (type==2) { prevFeatureOnMatchSeq.id=id;prevFeatureOnMatchSeq.color=color; prevFeatureOnMatchSeq.start=start;prevFeatureOnMatchSeq.stop=stop; prevFeatureOnMatchSeq.isnotrange=isnotrange; } } var lastDiv=''; function highlightDiv(id,color) { if (noHighLight || id == lastDiv) return; if (lastDiv) { var e=document.getElementById(lastDiv); if (e) {e.style.backgroundColor='#F9F9F9';} } document.getElementById(id).style.backgroundColor=color; lastDiv=id; }

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This view shows ScanProsite results together with rule-based predicted features inside (profile) matches.

Hits for USERPAT1{H-X-D-[IVM]-[ME]-D-X(1,2)-[FY]} motif on all Swiss-Prot (release 44.0) database sequences :

found: 39 hits in 39 sequences




hits by patterns: [39 hits (by 1 pattern) on 39 sequences]

Hits by USERPAT1 :
Pattern: H-X-D-[IVM]-[ME]-D-X(1,2)-[FY]
Approximate number of expected random matches [Ref: PMID 11535175] in Swiss-Prot release 41 (122564 sequences): 5
P32719
(ALSE_ECOLI)
sp|P32719|ALSE_ECOLI hits30 - 38: USERPAT1     (231 aa)    individual view
D-allulose-6-phosphate 3-epimerase (EC 5.1.3.-).  Escherichia coli

30 - 38:  HiDIMDghF


Q8YWF0
(MURE_ANASP)
sp|Q8YWF0|MURE_ANASP hits215 - 222: USERPAT1     (496 aa)    individual view
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase).  Anabaena sp. (strain PCC 7120)

215 - 222:  HsDMEDy.F


Q8F4J4
(MURE_LEPIN)
sp|Q8F4J4|MURE_LEPIN hits223 - 230: USERPAT1     (506 aa)    individual view
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase).  Leptospira interrogans

223 - 230:  HsDMEDy.F


Q82AE1
(MURE_STRAW)
sp|Q82AE1|MURE_STRAW hits223 - 230: USERPAT1     (506 aa)    individual view
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase).  Streptomyces avermitilis

223 - 230:  HsDMEDy.F


Q8NFH3
(NU43_HUMAN)
sp|Q8NFH3|NU43_HUMAN hits74 - 82: USERPAT1     (380 aa)    individual view
Nucleoporin Nup43 (p42).  Homo sapiens (Human)

74 - 82:  HgDVMDlqF


P59235
(NU43_MOUSE)
sp|P59235|NU43_MOUSE hits74 - 82: USERPAT1     (380 aa)    individual view
Nucleoporin Nup43.  Mus musculus (Mouse)

74 - 82:  HgDVMDlqF


P78798
(PEX7_SCHPO)
sp|P78798|PEX7_SCHPO hits55 - 63: USERPAT1     (308 aa)    individual view
Peroxisomal targeting signal 2 receptor (PTS2 receptor) (Peroxin-7).  Schizosaccharomyces pombe (Fission yeast)

55 - 63:  HyDVEDslF


P40117
(RPEC_ALCEU)
sp|P40117|RPEC_ALCEU hits46 - 54: USERPAT1     (241 aa)    individual view
Ribulose-phosphate 3-epimerase, chromosomal (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E).  Alcaligenes eutrophus (Ralstonia eutropha)

46 - 54:  HfDVMDnhY


Q04539
(RPEP_ALCEU)
sp|Q04539|RPEP_ALCEU hits46 - 54: USERPAT1     (241 aa)    individual view
Ribulose-phosphate 3-epimerase, plasmid (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E).  Alcaligenes eutrophus (Ralstonia eutropha)

46 - 54:  HfDVMDnhY


O67098
(RPE_AQUAE)
sp|O67098|RPE_AQUAE hits32 - 40: USERPAT1     (222 aa)    individual view
Ribulose-phosphate 3-epimerase (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E).  Aquifex aeolicus

32 - 40:  HyDVMDghF


O34557
(RPE_BACSU)
sp|O34557|RPE_BACSU hits32 - 40: USERPAT1     (217 aa)    individual view
Ribulose-phosphate 3-epimerase (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E).  Bacillus subtilis

32 - 40:  HiDVMDghF


P57603
(RPE_BUCAI)
sp|P57603|RPE_BUCAI hits34 - 42: USERPAT1     (228 aa)    individual view
Ribulose-phosphate 3-epimerase (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E).  Buchnera aphidicola (subsp. Acyrthosiphon pisum) (Acyrthosiphon pisum symbiotic bacterium)

34 - 42:  HfDVMDnhY


Q8K940
(RPE_BUCAP)
sp|Q8K940|RPE_BUCAP hits34 - 42: USERPAT1     (228 aa)    individual view
Ribulose-phosphate 3-epimerase (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E).  Buchnera aphidicola (subsp. Schizaphis graminum)

34 - 42:  HfDVMDnhY


Q89A59
(RPE_BUCBP)
sp|Q89A59|RPE_BUCBP hits34 - 42: USERPAT1     (228 aa)    individual view
Ribulose-phosphate 3-epimerase (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E).  Buchnera aphidicola (subsp. Baizongia pistaciae)

34 - 42:  HyDVMDnhY


Q9PKR7
(RPE_CHLMU)
sp|Q9PKR7|RPE_CHLMU hits36 - 44: USERPAT1     (228 aa)    individual view
Ribulose-phosphate 3-epimerase (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E).  Chlamydia muridarum

36 - 44:  HiDVMDghF


Q9Z8Z9
(RPE_CHLPN)
sp|Q9Z8Z9|RPE_CHLPN hits37 - 45: USERPAT1     (229 aa)    individual view
Ribulose-phosphate 3-epimerase (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E).  Chlamydia pneumoniae (Chlamydophila pneumoniae)

37 - 45:  HiDIMDghF


O84123
(RPE_CHLTR)
sp|O84123|RPE_CHLTR hits41 - 49: USERPAT1     (233 aa)    individual view
Ribulose-phosphate 3-epimerase (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E).  Chlamydia trachomatis

41 - 49:  HiDVMDghF


P32661
(RPE_ECOLI)
sp|P32661|RPE_ECOLI hits34 - 42: USERPAT1     (225 aa)    individual view
Ribulose-phosphate 3-epimerase (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E).  Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri

34 - 42:  HfDVMDnhY


P44756
(RPE_HAEIN)
sp|P44756|RPE_HAEIN hits34 - 42: USERPAT1     (224 aa)    individual view
Ribulose-phosphate 3-epimerase (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E).  Haemophilus influenzae

34 - 42:  HfDVMDnhY


Q9ZJ75
(RPE_HELPJ)
sp|Q9ZJ75|RPE_HELPJ hits29 - 37: USERPAT1     (217 aa)    individual view
Ribulose-phosphate 3-epimerase (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E).  Helicobacter pylori J99 (Campylobacter pylori J99)

29 - 37:  HvDVMDghY


P56188
(RPE_HELPY)
sp|P56188|RPE_HELPY hits29 - 37: USERPAT1     (217 aa)    individual view
Ribulose-phosphate 3-epimerase (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E).  Helicobacter pylori (Campylobacter pylori)

29 - 37:  HvDVMDghY


Q96AT9
(RPE_HUMAN)
sp|Q96AT9|RPE_HUMAN hits35 - 43: USERPAT1     (228 aa)    individual view
Ribulose-phosphate 3-epimerase (EC 5.1.3.1) (Ribulose-5-phosphate-3-epimerase) (HUSSY-17).  Homo sapiens (Human)

35 - 43:  HlDVMDghF


Q58093
(RPE_METJA)
sp|Q58093|RPE_METJA hits32 - 40: USERPAT1     (234 aa)    individual view
Ribulose-phosphate 3-epimerase (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E).  Methanococcus jannaschii

32 - 40:  HvDMMDghF


Q8VEE0
(RPE_MOUSE)
sp|Q8VEE0|RPE_MOUSE hits35 - 43: USERPAT1     (228 aa)    individual view
Ribulose-phosphate 3-epimerase (EC 5.1.3.1) (Ribulose-5-phosphate-epimerase).  Mus musculus (Mouse)

35 - 43:  HlDVMDghF


P47358
(RPE_MYCGE)
sp|P47358|RPE_MYCGE hits33 - 40: USERPAT1     (209 aa)    individual view
Probable ribulose-phosphate 3-epimerase (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E).  Mycoplasma genitalium

33 - 40:  HyDVMDq.F


Q9CCP9
(RPE_MYCLE)
sp|Q9CCP9|RPE_MYCLE hits31 - 39: USERPAT1     (224 aa)    individual view
Ribulose-phosphate 3-epimerase (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E).  Mycobacterium leprae

31 - 39:  HvDVMDghF


P75522
(RPE_MYCPN)
sp|P75522|RPE_MYCPN hits38 - 45: USERPAT1     (215 aa)    individual view
Probable ribulose-phosphate 3-epimerase (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E).  Mycoplasma pneumoniae

38 - 45:  HyDVMDh.F


P71676
(RPE_MYCTU)
sp|P71676|RPE_MYCTU hits36 - 44: USERPAT1     (229 aa)    individual view
Ribulose-phosphate 3-epimerase (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E).  Mycobacterium tuberculosis, and Mycobacterium bovis

36 - 44:  HvDVMDghF


Q9ZTP5
(RPE_ORYSA)
sp|Q9ZTP5|RPE_ORYSA hits81 - 89: USERPAT1     (274 aa)    individual view
Ribulose-phosphate 3-epimerase, chloroplast precursor (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (RPE) (R5P3E).  Oryza sativa (Rice)

81 - 89:  HvDVMDgrF


P51012
(RPE_RHOCA)
sp|P51012|RPE_RHOCA hits37 - 45: USERPAT1     (228 aa)    individual view
Ribulose-phosphate 3-epimerase (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E).  Rhodobacter capsulatus (Rhodopseudomonas capsulata)

37 - 45:  HvDVMDghF


P51013
(RPE_RHORU)
sp|P51013|RPE_RHORU hits35 - 43: USERPAT1     (225 aa)    individual view
Ribulose-phosphate 3-epimerase (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E).  Rhodospirillum rubrum

35 - 43:  HfDVMDnhY


P45455
(RPE_SERMA)
sp|P45455|RPE_SERMA hits34 - 42: USERPAT1     (210 aa)    individual view
Ribulose-phosphate 3-epimerase (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E).  Serratia marcescens

34 - 42:  HfDVMDnhY


Q43843
(RPE_SOLTU)
sp|Q43843|RPE_SOLTU hits87 - 95: USERPAT1     (280 aa)    individual view
Ribulose-phosphate 3-epimerase, chloroplast precursor (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (RPE) (R5P3E) (Fragment).  Solanum tuberosum (Potato)

87 - 95:  HvDVMDgrF


Q43157
(RPE_SPIOL)
sp|Q43157|RPE_SPIOL hits92 - 100: USERPAT1     (285 aa)    individual view
Ribulose-phosphate 3-epimerase, chloroplast precursor (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (RPE) (R5P3E).  Spinacia oleracea (Spinach)

92 - 100:  HvDVMDgrF


Q9L0Z5
(RPE_STRCO)
sp|Q9L0Z5|RPE_STRCO hits31 - 39: USERPAT1     (228 aa)    individual view
Ribulose-phosphate 3-epimerase (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E).  Streptomyces coelicolor

31 - 39:  HvDVMDnhF


P74061
(RPE_SYNY3)
sp|P74061|RPE_SYNY3 hits34 - 42: USERPAT1     (229 aa)    individual view
Ribulose-phosphate 3-epimerase (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E).  Synechocystis sp. (strain PCC 6803)

34 - 42:  HvDVMDgrF


O66107
(RPE_TREPA)
sp|O66107|RPE_TREPA hits35 - 43: USERPAT1     (218 aa)    individual view
Ribulose-phosphate 3-epimerase (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E).  Treponema pallidum

35 - 43:  HlDVMDghF


P46969
(RPE_YEAST)
sp|P46969|RPE_YEAST hits34 - 42: USERPAT1     (238 aa)    individual view
Ribulose-phosphate 3-epimerase (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (RPE).  Saccharomyces cerevisiae (Baker's yeast)

34 - 42:  HiDVMDghF


P39362
(SGCE_ECOLI)
sp|P39362|SGCE_ECOLI hits31 - 39: USERPAT1     (210 aa)    individual view
Protein sgcE (EC 5.1.3.-).  Escherichia coli

31 - 39:  HlDIEDssF






shaded alignment of hits






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