SEQUENCE ALIGNMENT.
PROTEIN SIMILARITY AND FAMILIES
Presentations
Practical lessons
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Pairwise and Multiple
Sequence alignments. Similarity Searches
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Command line BLAST and Sequence
Clustering with PERL
A selection of links
Tools
Databases of Protein Families defined by Sequence Similarity
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COGs. Clusters of Orthologous
Groups of proteins, at NCBI.
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InParanoid. Database
of pairwise orthologs, at CGB, Karolinska Institute, Sweden.
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ProtoMap. Hierarchical classification
of all proteins in SWISSPROT and TrEMBL.
February 2004