BLASTP2 Result
of 
Bork Group's Advanced BLAST2 Search Service at 
EMBL.
back to BLAST2
BLASTP 2.0MP-WashU [16-Dec-1999] [irix6-r10k-L64 23:35:48 16-Dec-1999]
Copyright (C) 1996-1999 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-1999) http://blast.wustl.edu
Query= query_sequence
(91 letters)
Echofilter:
>Filtered+0
MSLRKLTEGDLDEISSFLHNTISDFILKRVSAKEIVDIDITVLVEYTDELKVDISAELYL
DELSDADPGIVDEAVDAAYRSLESFLDGFRE
Database: pdb Release 13.Feb.2004
29,731 sequences; 6,724,155 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Query sequence and locally-aligned HSPs from database sequences
0 20 40 60 80
| | | | | |91
query_sequence | __________________________________________________
^ v pdb|1ND7|1ND7-A | _________________________________________________
^ v pdb|1GJX|1GJX-A | _____________________
^ v pdb|1N1X|1N1X-A | __________________
^ v pdb|1N3Z|1N3Z-A | __________________
^ v pdb|1F13|1F13-A | _____________________
^ v pdb|1GGT|1GGT-A | _____________________
^ v pdb|1GGU|1GGU-A | _____________________
^ v pdb|1GGY|1GGY-A | _____________________
^ v pdb|1QRK|1QRK-A | _____________________
^ v pdb|11BA|11BA-A | __________________
^ v pdb|11BG|11BG-A | __________________
^ v pdb|1BSR|1BSR-A | __________________
^ v pdb|1QWQ|1QWQ-A | __________________
^ v pdb|1R3M|1R3M-A | __________________
^ v pdb|1GW3|1GW3 | _______________
^ v pdb|1GW4|1GW4 | _______________
^ v pdb|1ONL|1ONL-A | ____________________________
^ v pdb|1HNR|1HNR | _________
^ v pdb|1HNS|1HNS | _________
^ v pdb|1F4M|1F4M-A | ________________
^ v pdb|1F4N|1F4N-A | ________________
^ v pdb|1KU5|1KU5-A | _________________
^ v pdb|1WJA|1WJA-A | _______
^ v pdb|1WJC|1WJC-A | _______
^ v pdb|1WJE|1WJE-A | _______
^ v pdb|1EVU|1EVU-A | _____________________
^ v pdb|1EX0|1EX0-A | _____________________
^ v pdb|1G5Z|1G5Z-A | _____________________
^ v pdb|1GHJ|1GHJ | ______________
^ v pdb|1GHK|1GHK | ______________
^ v pdb|1FIE|1FIE-A | _____________________
Alignments:
^ = pdb|1ND7|1ND7-A CONFORMATIONAL FLEXIBILITY UNDERLIES UBIQUITIN LIGATION
MEDIATED BY THE WWP1 HECT DOMAIN E3 LIGASE
Length = 374
0 80 160 240 320
| | | | | |374
pdb|1ND7|1ND7-A | __________________________________________________
Local hits (HSPs) | ____________
Score = 72 (30.4 bits), Expect = 0.012, P = 0.011
Identities = 27/97 (27%), Positives = 46/97 (47%)
Query: 1 MSLRKLTEGDLDEISSFLHNT---ISDFILKRVSAKEIVDIDITVLVEYTD-ELKVDISA 56
M +KLT DL+ I + +N+ I D ++ + +D+ +L + T +LK+ S
Sbjct: 143 MLSKKLTIKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSN 202
Query: 57 ELYLDELSDADPGIVDE--AVDAAYRSLESFLDGFRE 91
L +E D G++ E ++FLDGF E
Sbjct: 203 ILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNE 239
^ = pdb|1GJX|1GJX-A SOLUTION STRUCTURE OF THE LIPOYL DOMAIN OF THE CHIMERIC
DIHYDROLIPOYL DEHYDROGENASE P64K FROM NEISSERIA MENINGITIDIS
Length = 81
0 20 40 60 80
| | | | |81
pdb|1GJX|1GJX-A | __________________________________________________
Local hits (HSPs) | _______________________
Score = 52 (23.4 bits), Expect = 1.1, P = 0.67
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 19 HNTISDFILKRVSAKEIVDIDITVLVEYTDELKVDISAEL 58
H + D I V+ + + +D T++ TD+ +D+ AE+
Sbjct: 13 HENV-DIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEV 51
^ = pdb|1N1X|1N1X-A CRYSTAL STRUCTURE ANALYSIS OF THE MONOMERIC [S-
CARBOXYAMIDOMETHYL-CYS31, S-CARBOXYAMIDOMETHYL-CYS32] BOVINE
SEMINAL RIBONUCLEASE
Length = 124
0 30 60 90 120
| | | | | |124
pdb|1N1X|1N1X-A | __________________________________________________
Local hits (HSPs) | _____________
Score = 56 (24.8 bits), Expect = 1.5, P = 0.78
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 1 MSLRKLTEGDLDEISSFLHNTISDFILKRV-SAKEI 35
M RK+T+G +++F+H +++D +K V S K++
Sbjct: 30 MXXRKMTQGKCKPVNTFVHESLAD--VKAVCSQKKV 63
^ = pdb|1N3Z|1N3Z-A CRYSTAL STRUCTURE OF THE [S-CARBOXYAMIDOMETHYL-CYS31, S-
CARBOXYAMIDOMETHYL-CYS32] MONOMERIC DERIVATIVE OF THE BOVINE
SEMINAL RIBONUCLEASE IN THE LIGANDED STATE
Length = 124
0 30 60 90 120
| | | | | |124
pdb|1N3Z|1N3Z-A | __________________________________________________
Local hits (HSPs) | _____________
Score = 56 (24.8 bits), Expect = 1.5, P = 0.78
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 1 MSLRKLTEGDLDEISSFLHNTISDFILKRV-SAKEI 35
M RK+T+G +++F+H +++D +K V S K++
Sbjct: 30 MXXRKMTQGKCKPVNTFVHESLAD--VKAVCSQKKV 63
^ = pdb|1F13|1F13-A RECOMBINANT HUMAN CELLULAR COAGULATION FACTOR XIII
Length = 731
0 150 300 450 600
| | | | | |731
pdb|1F13|1F13-A | __________________________________________________
Local hits (HSPs) | __
Score = 62 (26.9 bits), Expect = 1.9, P = 0.84
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 21 TISDFILKRVSAKEIVDIDITVLVEYTDELKVDI-SAELYLD 61
TI + I+K V ++V D+TV VE+T+ LK + + ++LD
Sbjct: 628 TIPEIIIK-VRGTQVVGSDMTVTVEFTNPLKETLRNVWVHLD 668
^ = pdb|1GGT|1GGT-A COAGULATION FACTOR XIII (A-SUBUNIT ZYMOGEN) (E.C.2.3.2.13)
(PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE A CHAIN)
Length = 731
0 150 300 450 600
| | | | | |731
pdb|1GGT|1GGT-A | __________________________________________________
Local hits (HSPs) | __
Score = 62 (26.9 bits), Expect = 1.9, P = 0.84
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 21 TISDFILKRVSAKEIVDIDITVLVEYTDELKVDI-SAELYLD 61
TI + I+K V ++V D+TV VE+T+ LK + + ++LD
Sbjct: 628 TIPEIIIK-VRGTQVVGSDMTVTVEFTNPLKETLRNVWVHLD 668
^ = pdb|1GGU|1GGU-A HUMAN FACTOR XIII WITH CALCIUM BOUND IN THE ION SITE
Length = 731
0 150 300 450 600
| | | | | |731
pdb|1GGU|1GGU-A | __________________________________________________
Local hits (HSPs) | __
Score = 62 (26.9 bits), Expect = 1.9, P = 0.84
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 21 TISDFILKRVSAKEIVDIDITVLVEYTDELKVDI-SAELYLD 61
TI + I+K V ++V D+TV VE+T+ LK + + ++LD
Sbjct: 628 TIPEIIIK-VRGTQVVGSDMTVTVEFTNPLKETLRNVWVHLD 668
^ = pdb|1GGY|1GGY-A HUMAN FACTOR XIII WITH YTTERBIUM BOUND IN THE ION SITE
Length = 731
0 150 300 450 600
| | | | | |731
pdb|1GGY|1GGY-A | __________________________________________________
Local hits (HSPs) | __
Score = 62 (26.9 bits), Expect = 1.9, P = 0.84
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 21 TISDFILKRVSAKEIVDIDITVLVEYTDELKVDI-SAELYLD 61
TI + I+K V ++V D+TV VE+T+ LK + + ++LD
Sbjct: 628 TIPEIIIK-VRGTQVVGSDMTVTVEFTNPLKETLRNVWVHLD 668
^ = pdb|1QRK|1QRK-A HUMAN FACTOR XIII WITH STRONTIUM BOUND IN THE ION SITE
Length = 731
0 150 300 450 600
| | | | | |731
pdb|1QRK|1QRK-A | __________________________________________________
Local hits (HSPs) | __
Score = 62 (26.9 bits), Expect = 1.9, P = 0.84
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 21 TISDFILKRVSAKEIVDIDITVLVEYTDELKVDI-SAELYLD 61
TI + I+K V ++V D+TV VE+T+ LK + + ++LD
Sbjct: 628 TIPEIIIK-VRGTQVVGSDMTVTVEFTNPLKETLRNVWVHLD 668
^ = pdb|11BA|11BA-A BINDING OF A SUBSTRATE ANALOGUE TO A DOMAIN SWAPPING PROTEIN
IN THE COMPLEX OF BOVINE SEMINAL RIBONUCLEASE WITH
URIDYLYL-2',5'-ADENOSINE
Length = 124
0 30 60 90 120
| | | | | |124
pdb|11BA|11BA-A | __________________________________________________
Local hits (HSPs) | _____________
Score = 55 (24.4 bits), Expect = 2.1, P = 0.87
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 1 MSLRKLTEGDLDEISSFLHNTISDFILKRV-SAKEI 35
M RK+T+G +++F+H +++D +K V S K++
Sbjct: 30 MCCRKMTQGKCKPVNTFVHESLAD--VKAVCSQKKV 63
^ = pdb|11BG|11BG-A A POTENTIAL ALLOSTERIC SUBSITE GENERATED BY DOMAIN SWAPPING
IN BOVINE SEMINAL RIBONUCLEASE
Length = 124
0 30 60 90 120
| | | | | |124
pdb|11BG|11BG-A | __________________________________________________
Local hits (HSPs) | _____________
Score = 55 (24.4 bits), Expect = 2.1, P = 0.87
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 1 MSLRKLTEGDLDEISSFLHNTISDFILKRV-SAKEI 35
M RK+T+G +++F+H +++D +K V S K++
Sbjct: 30 MCCRKMTQGKCKPVNTFVHESLAD--VKAVCSQKKV 63
^ = pdb|1BSR|1BSR-A RIBONUCLEASE (BOVINE, SEMINAL) (BS-RNASE)
Length = 124
0 30 60 90 120
| | | | | |124
pdb|1BSR|1BSR-A | __________________________________________________
Local hits (HSPs) | _____________
Score = 55 (24.4 bits), Expect = 2.1, P = 0.87
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 1 MSLRKLTEGDLDEISSFLHNTISDFILKRV-SAKEI 35
M RK+T+G +++F+H +++D +K V S K++
Sbjct: 30 MCCRKMTQGKCKPVNTFVHESLAD--VKAVCSQKKV 63
^ = pdb|1QWQ|1QWQ-A SOLUTION STRUCTURE OF THE MONOMERIC N67D MUTANT OF BOVINE
SEMINAL RIBONUCLEASE
Length = 124
0 30 60 90 120
| | | | | |124
pdb|1QWQ|1QWQ-A | __________________________________________________
Local hits (HSPs) | _____________
Score = 55 (24.4 bits), Expect = 2.1, P = 0.87
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 1 MSLRKLTEGDLDEISSFLHNTISDFILKRV-SAKEI 35
M RK+T+G +++F+H +++D +K V S K++
Sbjct: 30 MCCRKMTQGKCKPVNTFVHESLAD--VKAVCSQKKV 63
^ = pdb|1R3M|1R3M-A CRYSTAL STRUCTURE OF THE DIMERIC UNSWAPPED FORM OF BOVINE
SEMINAL RIBONUCLEASE
Length = 124
0 30 60 90 120
| | | | | |124
pdb|1R3M|1R3M-A | __________________________________________________
Local hits (HSPs) | _____________
Score = 55 (24.4 bits), Expect = 2.1, P = 0.87
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 1 MSLRKLTEGDLDEISSFLHNTISDFILKRV-SAKEI 35
M RK+T+G +++F+H +++D +K V S K++
Sbjct: 30 MCCRKMTQGKCKPVNTFVHESLAD--VKAVCSQKKV 63
^ = pdb|1GW3|1GW3 THE HELIX-HINGE-HELIX STRUCTURAL MOTIF IN HUMAN APOLIPOPROTEIN
A-I DETERMINED BY NMR SPECTROSCOPY, 1 STRUCTURE
Length = 46
0 10 20 30 40
| | | | | |46
pdb|1GW3|1GW3 | __________________________________________________
Local hits (HSPs) | _______________________________
Score = 42 (19.8 bits), Expect = 2.1, P = 0.88
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 29 RVSAKEIVDIDITVLVEYTDELKVDISAEL 58
R A+ VD T L Y+DEL+ ++A L
Sbjct: 8 RDRARAHVDALRTHLAPYSDELRQRLAARL 37
^ = pdb|1GW4|1GW4 THE HELIX-HINGE-HELIX STRUCTURAL MOTIF IN HUMAN APOLIPOPROTEIN
A-I DETERMINED BY NMR SPECTROSCOPY, 1 STRUCTURE
Length = 46
0 10 20 30 40
| | | | | |46
pdb|1GW4|1GW4 | __________________________________________________
Local hits (HSPs) | _______________________________
Score = 42 (19.8 bits), Expect = 2.1, P = 0.88
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 29 RVSAKEIVDIDITVLVEYTDELKVDISAEL 58
R A+ VD T L Y+DEL+ ++A L
Sbjct: 8 RDRARAHVDALRTHLAPYSDELRQRLAARL 37
^ = pdb|1ONL|1ONL-A CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS HB8 H-PROTEIN OF
THE GLYCINE CLEAVAGE SYSTEM
Length = 128
0 30 60 90 120
| | | | | |128
pdb|1ONL|1ONL-A | __________________________________________________
Local hits (HSPs) | ____________________
Score = 55 (24.4 bits), Expect = 2.2, P = 0.89
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 32 AKEIVDIDITVLVEYTDEL-KVDISAELYLDELSDADPGIVDEAVDAA-YRS-LES 84
A EIV++++ + E T EL D E ++ L D G +DE +DA Y+ LES
Sbjct: 73 AGEIVEVNLAL--EKTPELVNQDPYGEGWIFRLKPRDMGDLDELLDAGGYQEVLES 126
^ = pdb|1HNR|1HNR H-NS (DNA-BINDING DOMAIN)
Length = 47
0 10 20 30 40
| | | | | |47
pdb|1HNR|1HNR | __________________________________________________
Local hits (HSPs) | ___________________
Score = 41 (19.5 bits), Expect = 2.8, P = 0.94
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 68 PGIVDEAVDAAYRSLESFL 86
P ++ +A+D +SL+ FL
Sbjct: 26 PAVIKKAMDEQGKSLDDFL 44
^ = pdb|1HNS|1HNS H-NS (DNA-BINDING DOMAIN)
Length = 47
0 10 20 30 40
| | | | | |47
pdb|1HNS|1HNS | __________________________________________________
Local hits (HSPs) | ___________________
Score = 41 (19.5 bits), Expect = 2.8, P = 0.94
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 68 PGIVDEAVDAAYRSLESFL 86
P ++ +A+D +SL+ FL
Sbjct: 26 PAVIKKAMDEQGKSLDDFL 44
^ = pdb|1F4M|1F4M-A P3(2) CRYSTAL STRUCTURE OF ALA2ILE2-6, A VERSION OF ROP WITH
A REPACKED HYDROPHOBIC CORE AND A NEW FOLD.
Length = 63
0 20 40 60
| | | | |63
pdb|1F4M|1F4M-A | __________________________________________________
Local hits (HSPs) | _______________________
Score = 44 (20.5 bits), Expect = 3.6, P = 0.97
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 57 ELYLDELSDADPGIVDEAVDAAYRS-LESFLD 87
EL DE++D I D A D YRS L F D
Sbjct: 28 ELDADEIADIAESIHDHA-DEIYRSALARFGD 58
^ = pdb|1F4N|1F4N-A C2 CRYSTAL STRUCTURE OF ALA2ILE2-6, A VERSION OF ROP WITH A
REPACKED HYDROPHOBIC CORE AND A NEW FOLD.
Length = 63
0 20 40 60
| | | | |63
pdb|1F4N|1F4N-A | __________________________________________________
Local hits (HSPs) | _______________________
Score = 44 (20.5 bits), Expect = 3.6, P = 0.97
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 57 ELYLDELSDADPGIVDEAVDAAYRS-LESFLD 87
EL DE++D I D A D YRS L F D
Sbjct: 28 ELDADEIADIAESIHDHA-DEIYRSALARFGD 58
^ = pdb|1KU5|1KU5-A CRYSTAL STRUCTURE OF RECOMBINANT HISTONE HPHA FROM
HYPERTHERMOPHILIC ARCHAEON PYROCOCCUS HORIKOSHII OT3
Length = 70
0 20 40 60
| | | | |70
pdb|1KU5|1KU5-A | __________________________________________________
Local hits (HSPs) | _______________________
Score = 46 (21.3 bits), Expect = 4.7, P = 0.99
Identities = 8/32 (25%), Positives = 19/32 (59%)
Query: 24 DFILKRVSAKEIVDIDITVLVEYTDELKVDIS 55
D ++++ A+ + + VL EY +E ++I+
Sbjct: 13 DRLIRKAGAERVSEQAAKVLAEYLEEYAIEIA 44
^ = pdb|1WJA|1WJA-A SOLUTION STRUCTURE OF THE N-TERMINAL ZN BINDING DOMAIN OF
HIV-1 INTEGRASE (D FORM), NMR, REGULARIZED MEAN STRUCTURE
Length = 47
0 10 20 30 40
| | | | | |47
pdb|1WJA|1WJA-A | __________________________________________________
Local hits (HSPs) | _____________
Score = 38 (18.4 bits), Expect = 6.5, P = 1.0
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 23 SDFILKRVSAKEIV 36
SDF L V AKEIV
Sbjct: 24 SDFNLPPVVAKEIV 37
^ = pdb|1WJC|1WJC-A SOLUTION STRUCTURE OF THE N-TERMINAL ZN BINDING DOMAIN OF
HIV-1 INTEGRASE (E FORM), NMR, REGULARIZED MEAN STRUCTURE
Length = 47
0 10 20 30 40
| | | | | |47
pdb|1WJC|1WJC-A | __________________________________________________
Local hits (HSPs) | _____________
Score = 38 (18.4 bits), Expect = 6.5, P = 1.0
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 23 SDFILKRVSAKEIV 36
SDF L V AKEIV
Sbjct: 24 SDFNLPPVVAKEIV 37
^ = pdb|1WJE|1WJE-A SOLUTION STRUCTURE OF H12C MUTANT OF THE N-TERMINAL ZN
BINDING DOMAIN OF HIV-1 INTEGRASE COMPLEXED TO CADMIUM, NMR,
MINIMIZED AVERAGE STRUCTURE
Length = 46
0 10 20 30 40
| | | | | |46
pdb|1WJE|1WJE-A | __________________________________________________
Local hits (HSPs) | ______________
Score = 38 (18.4 bits), Expect = 6.5, P = 1.0
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 23 SDFILKRVSAKEIV 36
SDF L V AKEIV
Sbjct: 24 SDFNLPPVVAKEIV 37
^ = pdb|1EVU|1EVU-A HUMAN FACTOR XIII WITH CALCIUM BOUND IN THE ION SITE
Length = 730
0 150 300 450 600
| | | | | |730
pdb|1EVU|1EVU-A | __________________________________________________
Local hits (HSPs) | __
Score = 59 (25.8 bits), Expect = 7.1, P = 1.0
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 21 TISDFILKRVSAKEIVDIDITVLVEYTDELKVDI-SAELYLD 61
TI + I+K V ++V D+TV V++T+ LK + + ++LD
Sbjct: 627 TIPEIIIK-VRGTQVVGSDMTVTVQFTNPLKETLRNVWVHLD 667
^ = pdb|1EX0|1EX0-A HUMAN FACTOR XIII, MUTANT W279F ZYMOGEN
Length = 730
0 150 300 450 600
| | | | | |730
pdb|1EX0|1EX0-A | __________________________________________________
Local hits (HSPs) | __
Score = 59 (25.8 bits), Expect = 7.1, P = 1.0
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 21 TISDFILKRVSAKEIVDIDITVLVEYTDELKVDI-SAELYLD 61
TI + I+K V ++V D+TV V++T+ LK + + ++LD
Sbjct: 627 TIPEIIIK-VRGTQVVGSDMTVTVQFTNPLKETLRNVWVHLD 667
^ = pdb|1G5Z|1G5Z-A CRYSTAL STRUCTURE OF LYME DISEASE ANTIGEN OUTER SURFACE
PROTEIN C (OSPC) FROM BORRELIA BURGDORFERI STRAIN N40
Length = 164
0 40 80 120 160
| | | | | |164
pdb|1G5Z|1G5Z-A | __________________________________________________
Local hits (HSPs) | ___________
Score = 53 (23.7 bits), Expect = 7.5, P = 1.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 26 ILKRVSAKEIVDIDITVLVEYTDELKVDISAELYLDELSD 65
+LK KE +D E+T++LK + A L LD L+D
Sbjct: 74 VLKNEELKEKIDTAKQCSTEFTNKLKSE-HAVLGLDNLTD 112
^ = pdb|1GHJ|1GHJ SOLUTION STRUCTURE OF THE LIPOYL DOMAIN OF THE 2-OXOGLUTARATE
DEHYDROGENASE COMPLEX FROM AZOTOBACTER VINELAND II, NMR, MINIMIZED
AVERAGE STRUCTURE
Length = 79
0 20 40 60
| | | | |79
pdb|1GHJ|1GHJ | __________________________________________________
Local hits (HSPs) | _________________
Score = 47 (21.6 bits), Expect = 7.6, P = 1.0
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 48 DELKVDISAE-LYLDELSDADPGIVDEAV 75
DEL VDI + + ++ L++AD G++ E V
Sbjct: 32 DELIVDIETDKVVMEVLAEAD-GVIAEIV 59
^ = pdb|1GHK|1GHK SOLUTION STRUCTURE OF THE LIPOYL DOMAIN OF THE 2-OXOGLUTARATE
DEHYDROGENASE COMPLEX FROM AZOTOBACTER VINELAND II, NMR, 25
STRUCTURES
Length = 79
0 20 40 60
| | | | |79
pdb|1GHK|1GHK | __________________________________________________
Local hits (HSPs) | _________________
Score = 47 (21.6 bits), Expect = 7.6, P = 1.0
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 48 DELKVDISAE-LYLDELSDADPGIVDEAV 75
DEL VDI + + ++ L++AD G++ E V
Sbjct: 32 DELIVDIETDKVVMEVLAEAD-GVIAEIV 59
^ = pdb|1FIE|1FIE-A RECOMBINANT HUMAN COAGULATION FACTOR XIII
Length = 731
0 150 300 450 600
| | | | | |731
pdb|1FIE|1FIE-A | __________________________________________________
Local hits (HSPs) | __
Score = 58 (25.5 bits), Expect = 10., P = 1.0
Identities = 14/42 (33%), Positives = 27/42 (64%)
Query: 21 TISDFILKRVSAKEIVDIDITVLVEYTDELKVDI-SAELYLD 61
TI + I+K V ++V D+TV +++T+ LK + + ++LD
Sbjct: 628 TIPEIIIK-VRGTQVVGSDMTVTIQFTNPLKETLRNVWVHLD 668
Parameters:
matrix=BLOSUM62
E=10
V=50
B=50
hspmax=10
filter=seg
echofilter
stats
qtype
qres
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.138 0.361 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 91 91 10. 55 3 11 22 0.18 30
28 0.20 31
Statistics:
Query Expected Observed HSPs HSPs
Frame MatID High Score High Score Reportable Reported
+0 0 55 (25.1 bits) 55 (25.1 bits) 31 31
Query Neighborhd Word Excluded Failed Successful Overlaps
Frame MatID Words Hits Hits Extensions Extensions Excluded
+0 0 1299 1099357 184415 909421 5521 3
Database: /dove2/data/db/pdb
Title: pdb Release 13.Feb.2004
Release date: 13.Feb.2004
Posted date: 11:19:45 PM MET Feb 13, 2004
Last modified: unknown
First created: unknown
Format: BLAST-1.4
# of letters in database: 6,724,155
# of sequences in database: 29,731
# of database sequences satisfying E: 31
No. of states in DFA: 379 (75 KB)
Total size of DFA: 104 KB (128 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 4
Search cpu time: 10.79u 0.26s 11.05t Elapsed: 00:00:06
Total cpu time: 10.83u 0.30s 11.13t Elapsed: 00:00:06
Start: Mon Feb 16 16:43:58 2004 End: Mon Feb 16 16:44:04 2004
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