BLASTP2 Result
of 
Bork Group's Advanced BLAST2 Search Service at 
EMBL.
back to BLAST2
BLASTP 2.0MP-WashU [16-Dec-1999] [irix6-r10k-L64 23:35:48 16-Dec-1999]
Copyright (C) 1996-1999 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-1999) http://blast.wustl.edu
Query= query_sequence
(200 letters)
Echofilter:
>Filtered+0
MLKNTSSNLDAPVARSCDFAMKKMDLRKAFTLIEPGPVTLVTTSAGGTNNVMTISWTMAV
DFTPKLAITTGPWNFSYKALTKSRECVIAIPTVDLLDKVVGVGTCSGKDTDKFDTFRLTP
IKGKYVEAPLIKECVANIECXXXXXXXXXXXXXLEGVAAYFDTSRKEKRTLHAVGDGTFV
VDGRTLDRKKQMRSKLLGIF
Database: pdb Release 13.Feb.2004
29,731 sequences; 6,724,155 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Query sequence and locally-aligned HSPs from database sequences
0 40 80 120 160 200
| | | | | |200
query_sequence | __________________________________________________
^ v pdb|1EJE|1EJE-A | _______________________________
^ v pdb|1PM2|1PM2-A | __________
^ v pdb|1AV8|1AV8-A | __________
^ v pdb|1PFR|1PFR-A | __________
^ v pdb|2AV8|2AV8-A | __________
^ v pdb|1BIQ|1BIQ-A | __________
^ v pdb|1BIQ|1BIQ-B | __________
^ v pdb|1JPR|1JPR-A | __________
^ v pdb|1JQC|1JQC-A | __________
^ v pdb|1MRR|1MRR-A | __________
^ v pdb|1MXR|1MXR-A | __________
^ v pdb|1PIM|1PIM-A | __________
^ v pdb|1PIU|1PIU-A | __________
^ v pdb|1PIY|1PIY-A | __________
^ v pdb|1PIZ|1PIZ-A | __________
^ v pdb|1PJ0|1PJ0-A | __________
^ v pdb|1PJ1|1PJ1-A | __________
^ v pdb|1R65|1R65-A | __________
^ v pdb|1RIB|1RIB-A | __________
^ v pdb|1RNR|1RNR-A | __________
^ v pdb|1RSR|1RSR-A | __________
^ v pdb|1RSV|1RSV-A | __________
^ v pdb|1XIK|1XIK-A | __________
^ v pdb|1KDV|1KDV-A | ________________________
^ v pdb|1KDY|1KDY-A | ________________________
^ v pdb|1KDZ|1KDZ-A | ________________________
^ v pdb|1KE1|1KE1-A | ________________________
^ v pdb|1KE2|1KE2-A | ________________________
^ v pdb|1NLU|1NLU-A | ________________________
^ v pdb|1GA1|1GA1-A | ________________________
^ v pdb|1GA4|1GA4-A | ________________________
^ v pdb|1GA6|1GA6-A | ________________________
^ v pdb|1K9S|1K9S-A | _________
^ v pdb|1PK7|1PK7-A | _________
^ v pdb|1PK9|1PK9-A | _________
^ v pdb|1PKE|1PKE-A | _________
^ v pdb|1A69|1A69-A | _________
^ v pdb|1ECP|1ECP-A | _________
^ v pdb|1PR0|1PR0-A | _________
^ v pdb|1PR1|1PR1-A | _________
^ v pdb|1PR2|1PR2-A | _________
^ v pdb|1PR4|1PR4-A | _________
^ v pdb|1PR5|1PR5-A | _________
^ v pdb|1PR6|1PR6-A | _________
^ v pdb|1PW7|1PW7-A | _________
Alignments:
^ = pdb|1EJE|1EJE-A CRYSTAL STRUCTURE OF AN FMN-BINDING PROTEIN
Length = 192
0 40 80 120 160
| | | | | |192
pdb|1EJE|1EJE-A | __________________________________________________
Local hits (HSPs) | _________________________________
Score = 95 (38.5 bits), Expect = 0.00056, P = 0.00056
Identities = 30/127 (23%), Positives = 55/127 (43%)
Query: 16 SCDFAMKKMDLRKAFTLIEPGPVTLVTT-SAGGTNNVMTISWTMAVDFTPKL-AITTGPW 73
S DF + + A ++ P P +VTT G N S+TM V P + A + P
Sbjct: 9 SMDF--EDFPVESAHRILTPRPTVMVTTVDEEGNINAAPFSFTMPVSIDPPVVAFASAPD 66
Query: 74 NFSYKALTKSRECVIAIPTVDLLDKVVGVGTCSGKDTDKFDTFRLTPIKGKYVEAPLIKE 133
+ + + + + E VI I D+++++ ++ + L + V+ P I E
Sbjct: 67 HHTARNIESTHEFVINITPADIIERMWVTARDIPAGENELEAAGLAWTSSRRVKPPRIVE 126
Query: 134 CVANIEC 140
++EC
Sbjct: 127 APGHLEC 133
^ = pdb|1PM2|1PM2-A CRYSTAL STRUCTURE OF MANGANESE SUBSTITUTED R2-D84E (D84E
MUTANT OF THE R2 SUBUNIT OF E. COLI RIBONUCLEOTIDE REDUCTASE)
Length = 339
0 70 140 210 280
| | | | | |339
pdb|1PM2|1PM2-A | __________________________________________________
Local hits (HSPs) | ______
Score = 68 (29.0 bits), Expect = 2.6, P = 0.92
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 155 EGVAAYFDTSRKEKRTLHAVGDGTFVVDGRTLDRK-KQMRSKL 196
EG+++Y+D + H +G+GT V+G+T+ ++++ KL
Sbjct: 151 EGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKL 193
^ = pdb|1AV8|1AV8-A RIBONUCLEOTIDE REDUCTASE R2 SUBUNIT FROM E. COLI
Length = 340
0 70 140 210 280
| | | | | |340
pdb|1AV8|1AV8-A | __________________________________________________
Local hits (HSPs) | ______
Score = 68 (29.0 bits), Expect = 2.6, P = 0.92
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 155 EGVAAYFDTSRKEKRTLHAVGDGTFVVDGRTLDRK-KQMRSKL 196
EG+++Y+D + H +G+GT V+G+T+ ++++ KL
Sbjct: 151 EGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKL 193
^ = pdb|1PFR|1PFR-A RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 BETA CHAIN
Length = 340
0 70 140 210 280
| | | | | |340
pdb|1PFR|1PFR-A | __________________________________________________
Local hits (HSPs) | ______
Score = 68 (29.0 bits), Expect = 2.6, P = 0.92
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 155 EGVAAYFDTSRKEKRTLHAVGDGTFVVDGRTLDRK-KQMRSKL 196
EG+++Y+D + H +G+GT V+G+T+ ++++ KL
Sbjct: 151 EGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKL 193
^ = pdb|2AV8|2AV8-A Y122F MUTANT OF RIBONUCLEOTIDE REDUCTASE FROM ESCHERICHIA
COLI
Length = 340
0 70 140 210 280
| | | | | |340
pdb|2AV8|2AV8-A | __________________________________________________
Local hits (HSPs) | ______
Score = 68 (29.0 bits), Expect = 2.6, P = 0.92
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 155 EGVAAYFDTSRKEKRTLHAVGDGTFVVDGRTLDRK-KQMRSKL 196
EG+++Y+D + H +G+GT V+G+T+ ++++ KL
Sbjct: 151 EGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKL 193
^ = pdb|1BIQ|1BIQ-A RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 BETA CHAIN MUTANT
E238A
Length = 375
0 80 160 240 320
| | | | | |375
pdb|1BIQ|1BIQ-A | __________________________________________________
Local hits (HSPs) | _____
Score = 68 (29.0 bits), Expect = 2.9, P = 0.95
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 155 EGVAAYFDTSRKEKRTLHAVGDGTFVVDGRTLDRK-KQMRSKL 196
EG+++Y+D + H +G+GT V+G+T+ ++++ KL
Sbjct: 151 EGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKL 193
^ = pdb|1BIQ|1BIQ-B RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 BETA CHAIN MUTANT
E238A
Length = 375
0 80 160 240 320
| | | | | |375
pdb|1BIQ|1BIQ-B | __________________________________________________
Local hits (HSPs) | _____
Score = 68 (29.0 bits), Expect = 2.9, P = 0.95
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 155 EGVAAYFDTSRKEKRTLHAVGDGTFVVDGRTLDRK-KQMRSKL 196
EG+++Y+D + H +G+GT V+G+T+ ++++ KL
Sbjct: 151 EGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKL 193
^ = pdb|1JPR|1JPR-A MN SUBSTITUTED RIBONUCLEOTIDE REDUCTASE R2 FROM E. COLI
OXIDIZED BY NITRIC OXIDE
Length = 375
0 80 160 240 320
| | | | | |375
pdb|1JPR|1JPR-A | __________________________________________________
Local hits (HSPs) | _____
Score = 68 (29.0 bits), Expect = 2.9, P = 0.95
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 155 EGVAAYFDTSRKEKRTLHAVGDGTFVVDGRTLDRK-KQMRSKL 196
EG+++Y+D + H +G+GT V+G+T+ ++++ KL
Sbjct: 151 EGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKL 193
^ = pdb|1JQC|1JQC-A MN SUBSTITUTED RIBONUCLEOTIDE REDUCTASE R2 FROM E. COLI
OXIDIZED BY HYDROGEN PEROXIDE AND HYDROXYLAMINE
Length = 375
0 80 160 240 320
| | | | | |375
pdb|1JQC|1JQC-A | __________________________________________________
Local hits (HSPs) | _____
Score = 68 (29.0 bits), Expect = 2.9, P = 0.95
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 155 EGVAAYFDTSRKEKRTLHAVGDGTFVVDGRTLDRK-KQMRSKL 196
EG+++Y+D + H +G+GT V+G+T+ ++++ KL
Sbjct: 151 EGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKL 193
^ = pdb|1MRR|1MRR-A PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE (E.C.1.17.4.1) COMPLEX
WITH MANGANESE (SUBSTITUTED FOR IRON)
Length = 375
0 80 160 240 320
| | | | | |375
pdb|1MRR|1MRR-A | __________________________________________________
Local hits (HSPs) | _____
Score = 68 (29.0 bits), Expect = 2.9, P = 0.95
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 155 EGVAAYFDTSRKEKRTLHAVGDGTFVVDGRTLDRK-KQMRSKL 196
EG+++Y+D + H +G+GT V+G+T+ ++++ KL
Sbjct: 151 EGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKL 193
^ = pdb|1MXR|1MXR-A HIGH RESOLUTION STRUCTURE OF RIBONUCLEOTIDE REDUCTASE R2 FROM
E. COLI IN ITS OXIDISED (MET) FORM
Length = 375
0 80 160 240 320
| | | | | |375
pdb|1MXR|1MXR-A | __________________________________________________
Local hits (HSPs) | _____
Score = 68 (29.0 bits), Expect = 2.9, P = 0.95
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 155 EGVAAYFDTSRKEKRTLHAVGDGTFVVDGRTLDRK-KQMRSKL 196
EG+++Y+D + H +G+GT V+G+T+ ++++ KL
Sbjct: 151 EGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKL 193
^ = pdb|1PIM|1PIM-A DITHIONITE REDUCED E. COLI RIBONUCLEOTIDE REDUCTASE R2
SUBUNIT, D84E MUTANT
Length = 375
0 80 160 240 320
| | | | | |375
pdb|1PIM|1PIM-A | __________________________________________________
Local hits (HSPs) | _____
Score = 68 (29.0 bits), Expect = 2.9, P = 0.95
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 155 EGVAAYFDTSRKEKRTLHAVGDGTFVVDGRTLDRK-KQMRSKL 196
EG+++Y+D + H +G+GT V+G+T+ ++++ KL
Sbjct: 151 EGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKL 193
^ = pdb|1PIU|1PIU-A OXIDIZED RIBONUCLEOTIDE REDUCTASE R2-D84E MUTANT CONTAINING
OXO-BRIDGED DIFERRIC CLUSTER
Length = 375
0 80 160 240 320
| | | | | |375
pdb|1PIU|1PIU-A | __________________________________________________
Local hits (HSPs) | _____
Score = 68 (29.0 bits), Expect = 2.9, P = 0.95
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 155 EGVAAYFDTSRKEKRTLHAVGDGTFVVDGRTLDRK-KQMRSKL 196
EG+++Y+D + H +G+GT V+G+T+ ++++ KL
Sbjct: 151 EGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKL 193
^ = pdb|1PIY|1PIY-A RIBONUCLEOTIDE REDUCTASE R2 SOAKED WITH FERROUS ION AT
NEUTRAL PH
Length = 375
0 80 160 240 320
| | | | | |375
pdb|1PIY|1PIY-A | __________________________________________________
Local hits (HSPs) | _____
Score = 68 (29.0 bits), Expect = 2.9, P = 0.95
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 155 EGVAAYFDTSRKEKRTLHAVGDGTFVVDGRTLDRK-KQMRSKL 196
EG+++Y+D + H +G+GT V+G+T+ ++++ KL
Sbjct: 151 EGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKL 193
^ = pdb|1PIZ|1PIZ-A RIBONUCLEOTIDE REDUCTASE R2 D84E MUTANT SOAKED WITH FERROUS
IONS AT NEUTRAL PH
Length = 375
0 80 160 240 320
| | | | | |375
pdb|1PIZ|1PIZ-A | __________________________________________________
Local hits (HSPs) | _____
Score = 68 (29.0 bits), Expect = 2.9, P = 0.95
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 155 EGVAAYFDTSRKEKRTLHAVGDGTFVVDGRTLDRK-KQMRSKL 196
EG+++Y+D + H +G+GT V+G+T+ ++++ KL
Sbjct: 151 EGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKL 193
^ = pdb|1PJ0|1PJ0-A RIBONUCLEOTIDE REDUCTASE R2-D84E/W48F MUTANT SOAKED WITH
FERROUS IONS AT NEUTRAL PH
Length = 375
0 80 160 240 320
| | | | | |375
pdb|1PJ0|1PJ0-A | __________________________________________________
Local hits (HSPs) | _____
Score = 68 (29.0 bits), Expect = 2.9, P = 0.95
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 155 EGVAAYFDTSRKEKRTLHAVGDGTFVVDGRTLDRK-KQMRSKL 196
EG+++Y+D + H +G+GT V+G+T+ ++++ KL
Sbjct: 151 EGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKL 193
^ = pdb|1PJ1|1PJ1-A RIBONUCLEOTIDE REDUCTASE R2-D84E/W48F SOAKED WITH FERROUS
IONS AT PH 5
Length = 375
0 80 160 240 320
| | | | | |375
pdb|1PJ1|1PJ1-A | __________________________________________________
Local hits (HSPs) | _____
Score = 68 (29.0 bits), Expect = 2.9, P = 0.95
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 155 EGVAAYFDTSRKEKRTLHAVGDGTFVVDGRTLDRK-KQMRSKL 196
EG+++Y+D + H +G+GT V+G+T+ ++++ KL
Sbjct: 151 EGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKL 193
^ = pdb|1R65|1R65-A CRYSTAL STRUCTURE OF FERROUS SOAKED RIBONUCLEOTIDE REDUCTASE
R2 SUBUNIT (WILDTYPE) AT PH 5 FROM E. COLI
Length = 375
0 80 160 240 320
| | | | | |375
pdb|1R65|1R65-A | __________________________________________________
Local hits (HSPs) | _____
Score = 68 (29.0 bits), Expect = 2.9, P = 0.95
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 155 EGVAAYFDTSRKEKRTLHAVGDGTFVVDGRTLDRK-KQMRSKL 196
EG+++Y+D + H +G+GT V+G+T+ ++++ KL
Sbjct: 151 EGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKL 193
^ = pdb|1RIB|1RIB-A PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE (E.C.1.17.4.1)
Length = 375
0 80 160 240 320
| | | | | |375
pdb|1RIB|1RIB-A | __________________________________________________
Local hits (HSPs) | _____
Score = 68 (29.0 bits), Expect = 2.9, P = 0.95
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 155 EGVAAYFDTSRKEKRTLHAVGDGTFVVDGRTLDRK-KQMRSKL 196
EG+++Y+D + H +G+GT V+G+T+ ++++ KL
Sbjct: 151 EGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKL 193
^ = pdb|1RNR|1RNR-A PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE (E.C.1.17.4.1) MUTANT
WITH PHE 208 REPLACED BY TYR (F208Y) THEN CONVERTED TO DOPA
(DIHYDROXY PHENYLALANINE)
Length = 375
0 80 160 240 320
| | | | | |375
pdb|1RNR|1RNR-A | __________________________________________________
Local hits (HSPs) | _____
Score = 68 (29.0 bits), Expect = 2.9, P = 0.95
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 155 EGVAAYFDTSRKEKRTLHAVGDGTFVVDGRTLDRK-KQMRSKL 196
EG+++Y+D + H +G+GT V+G+T+ ++++ KL
Sbjct: 151 EGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKL 193
^ = pdb|1RSR|1RSR-A AZIDE COMPLEX OF THE DIFERROUS F208A MUTANT R2 SUBUNIT OF
RIBONUCLEOTIDE REDUCTASE
Length = 375
0 80 160 240 320
| | | | | |375
pdb|1RSR|1RSR-A | __________________________________________________
Local hits (HSPs) | _____
Score = 68 (29.0 bits), Expect = 2.9, P = 0.95
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 155 EGVAAYFDTSRKEKRTLHAVGDGTFVVDGRTLDRK-KQMRSKL 196
EG+++Y+D + H +G+GT V+G+T+ ++++ KL
Sbjct: 151 EGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKL 193
^ = pdb|1RSV|1RSV-A AZIDE COMPLEX OF THE DIFERROUS E238A MUTANT R2 SUBUNIT OF
RIBONUCLEOTIDE REDUCTASE
Length = 375
0 80 160 240 320
| | | | | |375
pdb|1RSV|1RSV-A | __________________________________________________
Local hits (HSPs) | _____
Score = 68 (29.0 bits), Expect = 2.9, P = 0.95
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 155 EGVAAYFDTSRKEKRTLHAVGDGTFVVDGRTLDRK-KQMRSKL 196
EG+++Y+D + H +G+GT V+G+T+ ++++ KL
Sbjct: 151 EGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKL 193
^ = pdb|1XIK|1XIK-A RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 BETA CHAIN
Length = 375
0 80 160 240 320
| | | | | |375
pdb|1XIK|1XIK-A | __________________________________________________
Local hits (HSPs) | _____
Score = 68 (29.0 bits), Expect = 2.9, P = 0.95
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 155 EGVAAYFDTSRKEKRTLHAVGDGTFVVDGRTLDRK-KQMRSKL 196
EG+++Y+D + H +G+GT V+G+T+ ++++ KL
Sbjct: 151 EGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKL 193
^ = pdb|1KDV|1KDV-A PSEUDOMONAS SERINE-CARBOXYL PROTEINASE COMPLEXED WITH THE
INHIBITOR AIAF (THIS ENZYME RENAMED "SEDOLISIN" IN 2003)
Length = 370
0 80 160 240 320
| | | | | |370
pdb|1KDV|1KDV-A | __________________________________________________
Local hits (HSPs) | ____________
Score = 64 (27.6 bits), Expect = 8.3, P = 1.0
Identities = 27/99 (27%), Positives = 43/99 (43%)
Query: 32 LIEPGPVTLVTTSAGGTNNVMTISWTMAVDFTPKLAITTGPWNFSYKALTKSRECVIAIP 91
+I G TL TTSAG +N T+ W +D KL T G ++ Y++ + V P
Sbjct: 198 VIAVGGTTLYTTSAGAYSNE-TV-WNEGLDSNGKLWATGGGYSV-YESKPSWQSVVSGTP 254
Query: 92 TVDLLDKVVGVGTCSGKDTDKFDTFRLTPIKGKYVEAPL 130
LL + G ++ +L I G + +P+
Sbjct: 255 GRRLLPDI-SFDAAQGTGALIYNYGQLQQIGGTSLASPI 292
^ = pdb|1KDY|1KDY-A PSEUDOMONAS SERINE-CARBOXYL PROTEINASE COMPLEXED WITH THE
INHIBITOR AIPF (THIS ENZYME RENAMED "SEDOLISIN" IN 2003)
Length = 370
0 80 160 240 320
| | | | | |370
pdb|1KDY|1KDY-A | __________________________________________________
Local hits (HSPs) | ____________
Score = 64 (27.6 bits), Expect = 8.3, P = 1.0
Identities = 27/99 (27%), Positives = 43/99 (43%)
Query: 32 LIEPGPVTLVTTSAGGTNNVMTISWTMAVDFTPKLAITTGPWNFSYKALTKSRECVIAIP 91
+I G TL TTSAG +N T+ W +D KL T G ++ Y++ + V P
Sbjct: 198 VIAVGGTTLYTTSAGAYSNE-TV-WNEGLDSNGKLWATGGGYSV-YESKPSWQSVVSGTP 254
Query: 92 TVDLLDKVVGVGTCSGKDTDKFDTFRLTPIKGKYVEAPL 130
LL + G ++ +L I G + +P+
Sbjct: 255 GRRLLPDI-SFDAAQGTGALIYNYGQLQQIGGTSLASPI 292
^ = pdb|1KDZ|1KDZ-A PSEUDOMONAS SERINE-CARBOXYL PROTEINASE COMPLEXED WITH THE
INHIBITOR TYROSTATIN (THIS ENZYME RENAMED "SEDOLISIN" IN 2003)
Length = 370
0 80 160 240 320
| | | | | |370
pdb|1KDZ|1KDZ-A | __________________________________________________
Local hits (HSPs) | ____________
Score = 64 (27.6 bits), Expect = 8.3, P = 1.0
Identities = 27/99 (27%), Positives = 43/99 (43%)
Query: 32 LIEPGPVTLVTTSAGGTNNVMTISWTMAVDFTPKLAITTGPWNFSYKALTKSRECVIAIP 91
+I G TL TTSAG +N T+ W +D KL T G ++ Y++ + V P
Sbjct: 198 VIAVGGTTLYTTSAGAYSNE-TV-WNEGLDSNGKLWATGGGYSV-YESKPSWQSVVSGTP 254
Query: 92 TVDLLDKVVGVGTCSGKDTDKFDTFRLTPIKGKYVEAPL 130
LL + G ++ +L I G + +P+
Sbjct: 255 GRRLLPDI-SFDAAQGTGALIYNYGQLQQIGGTSLASPI 292
^ = pdb|1KE1|1KE1-A PSEUDOMONAS SERINE-CARBOXYL PROTEINASE COMPLEXED WITH THE
INHIBITOR PSEUDOTYROSTATIN (THIS ENZYME RENAMED "SEDOLISIN" IN
2003)
Length = 370
0 80 160 240 320
| | | | | |370
pdb|1KE1|1KE1-A | __________________________________________________
Local hits (HSPs) | ____________
Score = 64 (27.6 bits), Expect = 8.3, P = 1.0
Identities = 27/99 (27%), Positives = 43/99 (43%)
Query: 32 LIEPGPVTLVTTSAGGTNNVMTISWTMAVDFTPKLAITTGPWNFSYKALTKSRECVIAIP 91
+I G TL TTSAG +N T+ W +D KL T G ++ Y++ + V P
Sbjct: 198 VIAVGGTTLYTTSAGAYSNE-TV-WNEGLDSNGKLWATGGGYSV-YESKPSWQSVVSGTP 254
Query: 92 TVDLLDKVVGVGTCSGKDTDKFDTFRLTPIKGKYVEAPL 130
LL + G ++ +L I G + +P+
Sbjct: 255 GRRLLPDI-SFDAAQGTGALIYNYGQLQQIGGTSLASPI 292
^ = pdb|1KE2|1KE2-A PSEUDOMONAS SERINE-CARBOXYL PROTEINASE COMPLEXED WITH THE
INHIBITOR CHYMOSTATIN (THIS ENZYME RENAMED "SEDOLISIN" IN 2003)
Length = 370
0 80 160 240 320
| | | | | |370
pdb|1KE2|1KE2-A | __________________________________________________
Local hits (HSPs) | ____________
Score = 64 (27.6 bits), Expect = 8.3, P = 1.0
Identities = 27/99 (27%), Positives = 43/99 (43%)
Query: 32 LIEPGPVTLVTTSAGGTNNVMTISWTMAVDFTPKLAITTGPWNFSYKALTKSRECVIAIP 91
+I G TL TTSAG +N T+ W +D KL T G ++ Y++ + V P
Sbjct: 198 VIAVGGTTLYTTSAGAYSNE-TV-WNEGLDSNGKLWATGGGYSV-YESKPSWQSVVSGTP 254
Query: 92 TVDLLDKVVGVGTCSGKDTDKFDTFRLTPIKGKYVEAPL 130
LL + G ++ +L I G + +P+
Sbjct: 255 GRRLLPDI-SFDAAQGTGALIYNYGQLQQIGGTSLASPI 292
^ = pdb|1NLU|1NLU-A PSEUDOMONAS SEDOLISIN (SERINE-CARBOXYL PROTEINASE) COMPLEXED
WITH TWO MOLECULES OF PSEUDO-IODOTYROSTATIN
Length = 370
0 80 160 240 320
| | | | | |370
pdb|1NLU|1NLU-A | __________________________________________________
Local hits (HSPs) | ____________
Score = 64 (27.6 bits), Expect = 8.3, P = 1.0
Identities = 27/99 (27%), Positives = 43/99 (43%)
Query: 32 LIEPGPVTLVTTSAGGTNNVMTISWTMAVDFTPKLAITTGPWNFSYKALTKSRECVIAIP 91
+I G TL TTSAG +N T+ W +D KL T G ++ Y++ + V P
Sbjct: 198 VIAVGGTTLYTTSAGAYSNE-TV-WNEGLDSNGKLWATGGGYSV-YESKPSWQSVVSGTP 254
Query: 92 TVDLLDKVVGVGTCSGKDTDKFDTFRLTPIKGKYVEAPL 130
LL + G ++ +L I G + +P+
Sbjct: 255 GRRLLPDI-SFDAAQGTGALIYNYGQLQQIGGTSLASPI 292
^ = pdb|1GA1|1GA1-A CRYSTAL STRUCTURE ANALYSIS OF PSCP (PSEUDOMONAS SERINE-
CARBOXYL PROTEINASE) COMPLEXED WITH A FRAGMENT OF IODOTYROSTATIN
(THIS ENZYME RENAMED "SEDOLISIN" IN 2003)
Length = 372
0 80 160 240 320
| | | | | |372
pdb|1GA1|1GA1-A | __________________________________________________
Local hits (HSPs) | ____________
Score = 64 (27.6 bits), Expect = 8.4, P = 1.0
Identities = 27/99 (27%), Positives = 43/99 (43%)
Query: 32 LIEPGPVTLVTTSAGGTNNVMTISWTMAVDFTPKLAITTGPWNFSYKALTKSRECVIAIP 91
+I G TL TTSAG +N T+ W +D KL T G ++ Y++ + V P
Sbjct: 198 VIAVGGTTLYTTSAGAYSNE-TV-WNEGLDSNGKLWATGGGYSV-YESKPSWQSVVSGTP 254
Query: 92 TVDLLDKVVGVGTCSGKDTDKFDTFRLTPIKGKYVEAPL 130
LL + G ++ +L I G + +P+
Sbjct: 255 GRRLLPDI-SFDAAQGTGALIYNYGQLQQIGGTSLASPI 292
^ = pdb|1GA4|1GA4-A CRYSTAL STRUCTURE ANALYSIS OF PSCP (PSEUDOMONAS SERINE-
CARBOXYL PROTEINASE) COMPLEXED WITH INHIBITOR PSEUDOIODOTYROSTATIN
(THIS ENZYME RENAMED "SEDOLISIN" IN 2003)
Length = 372
0 80 160 240 320
| | | | | |372
pdb|1GA4|1GA4-A | __________________________________________________
Local hits (HSPs) | ____________
Score = 64 (27.6 bits), Expect = 8.4, P = 1.0
Identities = 27/99 (27%), Positives = 43/99 (43%)
Query: 32 LIEPGPVTLVTTSAGGTNNVMTISWTMAVDFTPKLAITTGPWNFSYKALTKSRECVIAIP 91
+I G TL TTSAG +N T+ W +D KL T G ++ Y++ + V P
Sbjct: 198 VIAVGGTTLYTTSAGAYSNE-TV-WNEGLDSNGKLWATGGGYSV-YESKPSWQSVVSGTP 254
Query: 92 TVDLLDKVVGVGTCSGKDTDKFDTFRLTPIKGKYVEAPL 130
LL + G ++ +L I G + +P+
Sbjct: 255 GRRLLPDI-SFDAAQGTGALIYNYGQLQQIGGTSLASPI 292
^ = pdb|1GA6|1GA6-A CRYSTAL STRUCTURE ANALYSIS OF PSCP (PSEUDOMONAS SERINE-
CARBOXYL PROTEINASE) COMPLEXED WITH A FRAGMENT OF TYROSTATIN (THIS
ENZYME RENAMED "SEDOLISIN" IN 2003)
Length = 372
0 80 160 240 320
| | | | | |372
pdb|1GA6|1GA6-A | __________________________________________________
Local hits (HSPs) | ____________
Score = 64 (27.6 bits), Expect = 8.4, P = 1.0
Identities = 27/99 (27%), Positives = 43/99 (43%)
Query: 32 LIEPGPVTLVTTSAGGTNNVMTISWTMAVDFTPKLAITTGPWNFSYKALTKSRECVIAIP 91
+I G TL TTSAG +N T+ W +D KL T G ++ Y++ + V P
Sbjct: 198 VIAVGGTTLYTTSAGAYSNE-TV-WNEGLDSNGKLWATGGGYSV-YESKPSWQSVVSGTP 254
Query: 92 TVDLLDKVVGVGTCSGKDTDKFDTFRLTPIKGKYVEAPL 130
LL + G ++ +L I G + +P+
Sbjct: 255 GRRLLPDI-SFDAAQGTGALIYNYGQLQQIGGTSLASPI 292
^ = pdb|1K9S|1K9S-A PURINE NUCLEOSIDE PHOSPHORYLASE FROM E. COLI IN COMPLEX WITH
FORMYCIN A DERIVATIVE AND PHOSPHATE
Length = 237
0 50 100 150 200
| | | | | |237
pdb|1K9S|1K9S-A | __________________________________________________
Local hits (HSPs) | ________
Score = 61 (26.5 bits), Expect = 9.8, P = 1.0
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 74 NFSYKALTKSRECVIAIPTVDLLDKVVGVGTCSGKDTDK 112
+F K + + C +P V L D V+G+G C+ ++
Sbjct: 79 DFGVKKIIRVGSCGAVLPHVKLRDVVIGMGACTDSKVNR 117
^ = pdb|1PK7|1PK7-A CRYSTAL STRUCTURE OF E. COLI PURINE NUCLEOSIDE PHOSPHORYLASE
COMPLEXED WITH ADENOSINE AND SULFATE/PHOSPHATE
Length = 237
0 50 100 150 200
| | | | | |237
pdb|1PK7|1PK7-A | __________________________________________________
Local hits (HSPs) | ________
Score = 61 (26.5 bits), Expect = 9.8, P = 1.0
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 74 NFSYKALTKSRECVIAIPTVDLLDKVVGVGTCSGKDTDK 112
+F K + + C +P V L D V+G+G C+ ++
Sbjct: 79 DFGVKKIIRVGSCGAVLPHVKLRDVVIGMGACTDSKVNR 117
^ = pdb|1PK9|1PK9-A CRYSTAL STRUCTURE OF E. COLI PURINE NUCLEOSIDE PHOSPHORYLASE
COMPLEXED WITH 2-FLUOROADENOSINE AND SULFATE/PHOSPHATE
Length = 237
0 50 100 150 200
| | | | | |237
pdb|1PK9|1PK9-A | __________________________________________________
Local hits (HSPs) | ________
Score = 61 (26.5 bits), Expect = 9.8, P = 1.0
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 74 NFSYKALTKSRECVIAIPTVDLLDKVVGVGTCSGKDTDK 112
+F K + + C +P V L D V+G+G C+ ++
Sbjct: 79 DFGVKKIIRVGSCGAVLPHVKLRDVVIGMGACTDSKVNR 117
^ = pdb|1PKE|1PKE-A CRYSTAL STRUCTURE OF E. COLI PURINE NUCLEOSIDE PHOSPHORYLASE
COMPLEXED WITH 2-FLUORO-2'-DEOXYADENOSINE AND SULFATE/PHOSPHATE
Length = 237
0 50 100 150 200
| | | | | |237
pdb|1PKE|1PKE-A | __________________________________________________
Local hits (HSPs) | ________
Score = 61 (26.5 bits), Expect = 9.8, P = 1.0
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 74 NFSYKALTKSRECVIAIPTVDLLDKVVGVGTCSGKDTDK 112
+F K + + C +P V L D V+G+G C+ ++
Sbjct: 79 DFGVKKIIRVGSCGAVLPHVKLRDVVIGMGACTDSKVNR 117
^ = pdb|1A69|1A69-A PURINE NUCLEOSIDE PHOSPHORYLASE IN COMPLEX WITH FORMYCIN B
AND SULPHATE (PHOSPHATE)
Length = 238
0 50 100 150 200
| | | | | |238
pdb|1A69|1A69-A | __________________________________________________
Local hits (HSPs) | _______
Score = 61 (26.5 bits), Expect = 9.9, P = 1.0
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 74 NFSYKALTKSRECVIAIPTVDLLDKVVGVGTCSGKDTDK 112
+F K + + C +P V L D V+G+G C+ ++
Sbjct: 79 DFGVKKIIRVGSCGAVLPHVKLRDVVIGMGACTDSKVNR 117
^ = pdb|1ECP|1ECP-A PURINE NUCLEOSIDE PHOSPHORYLASE
Length = 238
0 50 100 150 200
| | | | | |238
pdb|1ECP|1ECP-A | __________________________________________________
Local hits (HSPs) | _______
Score = 61 (26.5 bits), Expect = 9.9, P = 1.0
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 74 NFSYKALTKSRECVIAIPTVDLLDKVVGVGTCSGKDTDK 112
+F K + + C +P V L D V+G+G C+ ++
Sbjct: 79 DFGVKKIIRVGSCGAVLPHVKLRDVVIGMGACTDSKVNR 117
^ = pdb|1PR0|1PR0-A ESCHERICHIA COLI PURINE NUCLEOSIDE PHOSPHORYLASE COMPLEXED
WITH INOSINE AND PHOSPHATE/SULFATE
Length = 239
0 50 100 150 200
| | | | | |239
pdb|1PR0|1PR0-A | __________________________________________________
Local hits (HSPs) | _______
Score = 61 (26.5 bits), Expect = 9.9, P = 1.0
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 74 NFSYKALTKSRECVIAIPTVDLLDKVVGVGTCSGKDTDK 112
+F K + + C +P V L D V+G+G C+ ++
Sbjct: 80 DFGVKKIIRVGSCGAVLPHVKLRDVVIGMGACTDSKVNR 118
^ = pdb|1PR1|1PR1-A ESCHERICHIA COLI PURINE NUCLEOSIDE PHOSPHORYLASE COMPLEXED
WITH FORMYCIN B AND PHOSPHATE/SULFATE
Length = 239
0 50 100 150 200
| | | | | |239
pdb|1PR1|1PR1-A | __________________________________________________
Local hits (HSPs) | _______
Score = 61 (26.5 bits), Expect = 9.9, P = 1.0
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 74 NFSYKALTKSRECVIAIPTVDLLDKVVGVGTCSGKDTDK 112
+F K + + C +P V L D V+G+G C+ ++
Sbjct: 80 DFGVKKIIRVGSCGAVLPHVKLRDVVIGMGACTDSKVNR 118
^ = pdb|1PR2|1PR2-A ESCHERICHIA COLI PURINE NUCLEOSIDE PHOSPHORYLASE COMPLEXED
WITH 9-BETA-D-[2-DEOXYRIBOFURANOSYL]-6-METHYLPURINE AND
PHOSPHATE/SULFATE
Length = 239
0 50 100 150 200
| | | | | |239
pdb|1PR2|1PR2-A | __________________________________________________
Local hits (HSPs) | _______
Score = 61 (26.5 bits), Expect = 9.9, P = 1.0
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 74 NFSYKALTKSRECVIAIPTVDLLDKVVGVGTCSGKDTDK 112
+F K + + C +P V L D V+G+G C+ ++
Sbjct: 80 DFGVKKIIRVGSCGAVLPHVKLRDVVIGMGACTDSKVNR 118
^ = pdb|1PR4|1PR4-A ESCHERICHIA COLI PURINE NUCLEOSIDE PHOSPHORYLASE COMPLEXED
WITH 9-BETA-D-RIBOFURANOSYL-6-METHYLTHIOPURINE AND
PHOSPHATE/SULFATE
Length = 239
0 50 100 150 200
| | | | | |239
pdb|1PR4|1PR4-A | __________________________________________________
Local hits (HSPs) | _______
Score = 61 (26.5 bits), Expect = 9.9, P = 1.0
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 74 NFSYKALTKSRECVIAIPTVDLLDKVVGVGTCSGKDTDK 112
+F K + + C +P V L D V+G+G C+ ++
Sbjct: 80 DFGVKKIIRVGSCGAVLPHVKLRDVVIGMGACTDSKVNR 118
^ = pdb|1PR5|1PR5-A ESCHERICHIA COLI PURINE NUCLEOSIDE PHOSPHORYLASE COMPLEXED
WITH 7-DEAZAADENOSINE AND PHOSPHATE/SULFATE
Length = 239
0 50 100 150 200
| | | | | |239
pdb|1PR5|1PR5-A | __________________________________________________
Local hits (HSPs) | _______
Score = 61 (26.5 bits), Expect = 9.9, P = 1.0
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 74 NFSYKALTKSRECVIAIPTVDLLDKVVGVGTCSGKDTDK 112
+F K + + C +P V L D V+G+G C+ ++
Sbjct: 80 DFGVKKIIRVGSCGAVLPHVKLRDVVIGMGACTDSKVNR 118
^ = pdb|1PR6|1PR6-A ESCHERICHIA COLI PURINE NUCLEOSIDE PHOSPHORYLASE COMPLEXED
WITH 9-BETA-D-XYLOFURANOSYLADENINE AND PHOSPHATE/SULFATE
Length = 239
0 50 100 150 200
| | | | | |239
pdb|1PR6|1PR6-A | __________________________________________________
Local hits (HSPs) | _______
Score = 61 (26.5 bits), Expect = 9.9, P = 1.0
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 74 NFSYKALTKSRECVIAIPTVDLLDKVVGVGTCSGKDTDK 112
+F K + + C +P V L D V+G+G C+ ++
Sbjct: 80 DFGVKKIIRVGSCGAVLPHVKLRDVVIGMGACTDSKVNR 118
^ = pdb|1PW7|1PW7-A CRYSTAL STRUCTURE OF E. COLI PURINE NUCLEOSIDE PHOSPHORYLASE
COMPLEXED WITH 9-BETA-D- ARABINOFURANOSYLADENINE AND
SULFATE/PHOSPHATE
Length = 239
0 50 100 150 200
| | | | | |239
pdb|1PW7|1PW7-A | __________________________________________________
Local hits (HSPs) | _______
Score = 61 (26.5 bits), Expect = 9.9, P = 1.0
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 74 NFSYKALTKSRECVIAIPTVDLLDKVVGVGTCSGKDTDK 112
+F K + + C +P V L D V+G+G C+ ++
Sbjct: 80 DFGVKKIIRVGSCGAVLPHVKLRDVVIGMGACTDSKVNR 118
Parameters:
matrix=BLOSUM62
E=10
V=50
B=50
hspmax=10
filter=seg
echofilter
stats
qtype
qres
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.399 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 200 200 10. 63 3 11 22 0.23 32
31 0.23 35
Statistics:
Query Expected Observed HSPs HSPs
Frame MatID High Score High Score Reportable Reported
+0 0 58 (26.8 bits) 64 (29.5 bits) 45 45
Query Neighborhd Word Excluded Failed Successful Overlaps
Frame MatID Words Hits Hits Extensions Extensions Excluded
+0 0 3943 2539873 504986 2029696 5191 17
Database: /dove2/data/db/pdb
Title: pdb Release 13.Feb.2004
Release date: 13.Feb.2004
Posted date: 11:19:45 PM MET Feb 13, 2004
Last modified: unknown
First created: unknown
Format: BLAST-1.4
# of letters in database: 6,724,155
# of sequences in database: 29,731
# of database sequences satisfying E: 45
No. of states in DFA: 546 (107 KB)
Total size of DFA: 193 KB (256 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 4
Search cpu time: 11.84u 0.25s 12.09t Elapsed: 00:00:06
Total cpu time: 11.90u 0.31s 12.21t Elapsed: 00:00:06
Start: Mon Feb 16 17:09:46 2004 End: Mon Feb 16 17:09:52 2004
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