FSSP FAMILIES OF STRUCTURALLY SIMILAR PROTEINS, VERSION 1.0 (Apr 1 1995) CREATED Tue Feb 17 19:09:21 GMT 2004 for dali on sputnik2-node65.ebi.ac.uk METHOD Dali ver. 2.0: Holm, L., Sander, C. (1993) J.Mol.Biol. 233,123-138 DATABASE 4315 protein chains PDBID 6281 HEADER SWISS-MODEL (Automated Protein Modelling Server) COMPND ? SOURCE AUTHOR ProMod (SEE REFERENCE IN JRNL Records) SEQLENGTH 176 NALIGN 21 WARNING pairs with Z<2.0 are structurally dissimilar ## SUMMARY: PDB/chain identifiers and structural alignment statistics NR. STRID1 STRID2 Z RMSD LALI LSEQ2 %IDE REVERS PERMUT NFRAG TOPO PROTEIN 1: 6281 1eje-A 31.8 0.1 176 192 9 0 0 1 S fmn-binding protein 2: 6281 1usc-A 21.7 1.8 161 178 5 0 0 10 S putative styrene monooxygenase small component fragment 3: 6281 1i0r-A 19.1 2.2 148 161 9 0 0 11 S conserved hypothetical protein (ferric reductase) 4: 6281 1ci0-A 6.2 4.2 97 205 10 0 0 8 S pnp oxidase biological_unit 5: 6281 1axj 6.2 2.9 90 122 8 0 0 9 S fmn-binding protein biological_unit 6: 6281 1cqq-A 3.9 3.0 72 180 7 0 0 8 S type 2 rhinovirus 3c protease 7: 6281 1agj-A 3.4 7.6 93 242 12 0 0 14 S epidermolytic toxin a 8: 6281 1bef-A 3.2 2.8 65 177 8 0 0 10 S dengue virus ns3 serine protease fragment (ns3-pro) 9: 6281 2hrv-A 2.9 3.3 65 139 3 0 0 9 S 2a cysteine proteinase (picornavirus endopeptidase 2a) 10: 6281 1qq4-A 2.7 4.0 74 198 9 0 0 10 S alpha-lytic protease fragment Mutant 11: 6281 1jxp-A 2.7 2.9 66 177 6 0 0 10 S ns3 serine protease (hydrolase) ns4a (structural protei 12: 6281 1sky-E 2.6 3.5 58 470 5 0 0 6 S f1-atpase (f1-atp synthase) 13: 6281 1ep2-B 2.6 3.5 68 261 3 0 0 8 S dihydroorotate dehydrogenase b (pyrd subunit) dihydroor 14: 6281 1ia8-A 2.4 3.2 60 272 3 0 0 6 S chk1 checkpoint kinase fragment 15: 6281 1csn 2.4 3.1 60 293 3 0 0 6 S casein kinase-1 16: 6281 1vde-A 2.2 3.6 56 429 7 0 0 6 S pi-scei 17: 6281 1svp-A 2.2 2.7 59 160 3 0 0 8 S sindbis virus capsid protein fragment (sindbis virus co 18: 6281 1hav-A 2.2 2.8 74 216 11 0 0 9 S hepatitis a virus 3c proteinase (picornain 3c) Mutant 19: 6281 1arb 2.2 3.9 85 263 5 0 0 10 S Achromobacter protease i 20: 6281 1g8f-A 2.1 4.7 76 510 9 0 0 11 S sulfate adenylyltransferase (atp-sulfurylase, sat) 21: 6281 1fnc 2.0 3.6 72 296 1 0 0 9 S Ferredoxin:nadp+ oxidoreductase (ferredoxin reductase, ## ALIGNMENTS 1 - 21 SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC OCC . . . . : . . . . : . . . . : . . . . : . 1 1 A >> 0 0 0 2 Ah . . . . . Ah . . . . . . . . . . . . . . 2 2 R G >4 + 0 0 0 2 Hh . . . . . Eh . . . . . . . . . . . . . . 3 3 S G 34 S+ 0 0 0 2 Mh . . . . . Eh . . . . . . . . . . . . . . 4 4 C G X4 S+ 0 0 0 2 Mh . . . . . Ih . . . . . . . . . . . . . . 5 5 D T << S+ 0 0 0 2 St . . . . . Kh . . . . . . . . . . . . . . 6 6 F T 3 S+ 0 0 0 2 Mt . . . . . Kh . . . . . . . . . . . . . . 7 7 A S < S+ 0 0 0 3 Dt M . . . . Hh . . . . . . . . . . . . . . 8 8 M - 0 0 0 3 F Re . . . . Eh . . . . . . . . . . . . . . 9 9 K - 0 0 0 3 E Se . . . . Nh . . . . . . . . . . . . . . 10 10 K - 0 0 0 3 D Ye . . . . Kh . . . . . . . . . . . . . . 11 11 M - 0 0 0 4 F Re M . . . Yh . . . . . . . . . . . . . . 12 12 D > - 0 0 0 4 P A D . . . Yh . . . . . . . . . . . . . . 13 13 L G > S+ 0 0 0 3 Vg L Vg . . . . . . . . . . . . . . . . . . 14 14 R G 3 S+ 0 0 0 3 Eg Ps Eg . . . . . . . . . . . . . . . . . . 15 15 K G X S+ 0 0 0 3 Sg G Ag . . . . . . . . . . . . . . . . . . 16 16 A G X> + 0 0 0 3 Ag F Fg . . . . . . . . . . . . . . . . . . 17 17 F G 34 S+ 0 0 0 1 Hg . . . . . . . . . . . . . . . . . . . . 18 18 T G <4 S+ 0 0 0 3 Rg Y Yg . . . . . . . . . . . . . . . . . . 19 19 L T <4 S+ 0 0 0 3 It Ht Kg . . . . . . . . . . . . . . . . . . 20 20 I S < S+ 0 0 0 3 Ls Yt Is . . . . . . . . . . . . . . . . . . 21 21 E + 0 0 0 5 T Y S . Kt . Yt . . . . . . . . . . . . . . 22 22 P S S- 0 0 0 5 P P . L Ns . Pt . . . . . . . . . . . . . . 23 23 G E -A 172 0A 0 10 Re Gb Y Pt E . Yg . . Gt . . . Le . . Es Nt . . . 24 24 P E -A 171 0A 0 17 Pe V Gb Et G Pe Ng Es T A S . . Ge Ie . Ge Rs Ps Ph . 25 25 V + 0 0 0 17 T P L Ae Ve Ne Ie Es Qe Ae De . . E Ge . Fe L G Rh . 26 26 T E -BC 42 79B 0 17 Ve Ae Ye Ie Ve Ce Ge Ve Ae Ve Le . . G Ee . Ye Ae Ae Qh . 27 27 L E -B 41 0B 0 16 Me Ve Ie Te Ae Ne Ne Qe Te be Ye . . . G . Ne Te Ie Lh . 28 28 V E -B 40 0B 0 14 Ve Ve Ve Fe Ie Le Ve Ve Ye He Le . . . . . We Le Ae . . 29 29 T E +BD 39 76B 0 14 Te Ge Te Se Ae Ae Fe Lb Ye Se Ve . . . . . Ht Ve Ie . . 30 30 T E -B 38 0B 0 13 Te Ve Se Se Te Le Ve A Ce Ge T . . . . . . Te He . . 31 31 S E -B 37 0B 0 13 Ve Re Ee Ae Q L Kt Ls Kg Rt Rt . . . . . . Te H . . 32 32 A > - 0 0 0 11 D Ve Se Ee G At . . Hg Tt Ht . . . . . . Ve Pg . . 33 33 G T 3 S+ 0 0 0 7 Et . Nt Lt Es Nt . . . . . . . . . . . Nt Ng . . 34 34 G T 3 S- 0 0 0 5 Et Et . St . Qs . . . . . . . . . . . . Vg . . 35 35 T < + 0 0 0 8 G Et Gt Gt Ds Ps . . . . . . . . . . . Gt A . . 36 36 N - 0 0 0 11 N Re Re Re G Es Gt . Kg . . . . . . . . Te Es . V 37 37 N E -B 31 0B 0 13 Ie Ve Ke Ve P P Qt Es Nt . A . . . . . . Pe K . N 38 38 V E -B 30 0B 0 15 Ne Ne Ce Se He Te Te Pb Re Ge D . Ls . . . . Me Re . Ks 39 39 M E +B 29 0B 0 15 Ae Fe Ge Se Le Ie Se G Ye Ye Ve . Qe . . . . Le Ie . Fb 40 40 T E -B 28 0B 0 16 Ae Ce Qe Re Ve Ie Ae K Fe Qe Ie . Ee . . . Ge Ie Se . P 41 41 I E -B 27 0B 0 18 Pe Pe Ie Ie Ne Ne Te N Pe be Pe . Me At Ss . Ae Se Ne . Ye 42 42 S E -B 26 0B 0 18 Fe Ae Ae Le Te Ve Ge P Ie Ge Ve . Me Yt Fs . Ve Ee Se . Ve 43 43 W + 0 0 0 15 S Vs Ns Le We Ge . . Te Te Re . . G G . Qe G T . Ge 44 44 T + 0 0 0 16 Fs Ws T F Yg De Ve . . Ie . Re Te Ee Ve Dh . Ps Ss . Re 45 45 M E +E 57 0B 0 20 Te Ne Ve K L Ve Le R V Te Re Ve Ve Ve Ie Ge Ye L T . Ce 46 46 A E -E 56 0B 0 20 Me Te Fe Ee Ke Ve I A Te Ae R Ie Ve Qe Fe Ye Se Ke Se . Le 47 47 V E -E 55 0B 0 20 Pe Ge Qe Le Ve Se Gs Vs Se Ke Gs Qe Se Le Ee Ve Gt Me Fe . Le 48 48 D E + 0 0 0 20 Ve Le Le D L Y Ks Qt He Ne Ds Ve Qe Ae Ge Te Gt Ee Ve . Ne 49 49 F E > -E 54 0B 0 16 Se Se Te Hs Ds G . . De Ve . Me Re Ve Te D . Ee A . Te 50 50 T T 5S+ 0 0 0 15 It At St . . N . . We Te . Gt Ee Ne Ne Et . Ke As St Ke 51 51 P T 5S+ 0 0 0 13 Dt Dt Kt . . Te . . Qe Ve . . Ve E Nt Ht . . G Pt I 52 52 K T 5S- 0 0 0 15 Pt Pt Pt . Gt A . . Ye Re . . Ie E Qe Gs . De Ts L Te 53 53 L T 5 + 0 0 0 17 Pt Pt Vt Rs Nt Rs . . Ne Ge . Pt Fe Ae Qe I . Qe Ts T We 54 54 A E < -EF 49 146B 0 19 Ve Le Qe Gs Re Me Ns Tt Le Le . Ve Ee Ve Ve Ke . Ae He Ge He 55 55 I E -EF 47 145B 0 20 Ve Fe Ie Fe Ie Le Te K Le Te Ss Ve Me Ae Ae Ae . We Le Fe Me 56 56 T E +EF 46 144B 0 21 Ae Ge Ae Te Ve Ke Ve P Ie Qe Re De Ve Ve Ie Te Re Re Ne L Ve 57 57 T E -EF 45 143B 0 21 Fe Ve Ve Ie Ve Ye Le Gb Ge Se Ge Ve Le Ke Ke Ie Fe Ge Ve Le Fe 58 58 G + 0 0 0 21 Ae Se Ce Ye Pe S Te L Ee N Se Ke Ke Ie Fe Ke Te Ke Qe De Se 59 59 P - 0 0 0 20 Se Ie Le Se Ve Y N . G As Pe Fe Gs Ve Ee Te Ie G W Ve H 60 60 W > - 0 0 0 19 A S Ne Ne Gs P Rh S . . Re Es Tg De Pe Is Pe E Q D Et 61 61 N T 3 S+ 0 0 0 14 Pt Pt Kt Gs Gs . Hh Ls . . Pe . . Mt R . Rt . Pt Eh Gt 62 62 F T 3 S+ 0 0 0 14 Dt Kt Et Ts M . . Ds . . Vg Nt . C R H Gt . St Ah . 63 63 S S <> S- 0 0 0 12 Hs Rs Ns Ss Hh . . Fs . . . Gt . Ph As Th Vs . Gs . . 64 64 Y H > S+ 0 0 0 10 Hh Fh Dh Rh Kh . . . . . . H . Eh P Sh . . G . . 65 65 K H > S+ 0 0 0 15 Th Th Th Kh Th . Ih . . M . L Lg Nh Q Vh . . V Fh E 66 66 A H > S+ 0 0 0 19 Ah Hh Hh Ah Eh K Ah S E Gb Lg P Vg Ih Lh Rh . L . Ah I 67 67 L H X S+ 0 0 0 18 Rh Gh Nh Hh Ah St Kg Pt Pt Rt Kt . Dg Kh Rh Dh . Pt . Nt P 68 68 T H X>S+ 0 0 0 18 Nh Lh Ah Dh Nh Gt Fg Gt Gt Gt Gt . Eg Kh Dh Gh . Gt . Qt Y 69 69 K H X5S+ 0 0 0 18 Ih Lh Vh Ih Vh Y Ag T D D S . M Eh Eh Lh . M T I . 70 70 S H <5S+ 0 0 0 14 Eh Lh Kh Ah Ah . Nt . . . . . D Ih Yh Vh G . E K R 71 71 R H <5S+ 0 0 0 14 Sh Kh Eh Th Rh . Gt . . . . . Ls Ch Rh Sh Rt . Pt Pt Et 72 72 E H <5S- 0 0 0 14 Th Ah Sh N D . D . . . . . Pt Ih Th Lh Gt . Gt Dt Gt 73 73 C << + 0 0 0 21 H R Gs P E Ct Pg St Ct St St Ne Q Nh Yh Ah D Ct St T Q 74 74 V E + G 0 130B 0 19 Ee Re Ae Ne Re Gt Kg Gt Gt Gt Gt Ae Fe . . Rh Gt Gt Gt Re Se 75 75 I E - G 0 129B 0 18 Fe Fe Fe Ae Ve G Ve S G G G Le Le . . . R G S Ie Ve 76 76 A E -DG 29 128B 0 18 Ve Se Ge Ae Le Ve Se Pe Ke Se Pe Ke He . . . Pe Ae Pe Ae Ge 77 77 I E - G 0 127B 0 18 Ie Ae Ve Ie Me Le Fe Ie Le We Le Ie Le . . . Ie Le Ie Le Ve 78 78 P E - G 0 126B 0 18 Ne Se Se Ve Te Ye Re Ie Le Ie Le Qe A . . . Me Ve Ye Fe Ie 79 79 T B -C 26 0B 0 17 Ie Fe Ve Fe Le Ke Pe De Ce T Ce He V . . . D Se S . P 80 80 V - 0 0 0 15 T H Le Fe Ge . I Ks . St Pt K Ps . . . Nt S Pt . Ds 81 81 D B > -I 169 0C 0 9 Pb Pb Eb We . . Ne . . . . A N . . . . N . . Gs 82 82 L G > S+ 0 0 0 9 Ag Fg Lt Kt Ns . Te . . . . Rs . . . . . Qg . . Eb 83 83 L G 3 S+ 0 0 0 9 Dg Gg Et Dt Gs . D . . . . Ns . . . . . Sg . . D 84 84 D G <> S+ 0 0 0 6 Ig Qg T Lt Ps . . . . . . Et . . . . . . . . . 85 85 K H <> S+ 0 0 0 4 Ih Kh P . G . . . . . . . . . . . . . . . . 86 86 V H > S+ 0 0 0 3 Eh Dh Mh . . . . . . . . . . . . . . . . . . 87 87 V H > S+ 0 0 0 3 Rh Lh Fh . . . . . . . . . . . . . . . . . . 88 88 G H >< S+ 0 0 0 3 Mh Vh Ih . . . . . . . . . . . . . . . . . . 89 89 V H >< S+ 0 0 0 3 Wh Hh Gh . . . . . . . . . . . . . . . . . . 90 90 G H >< S+ 0 0 0 3 Vh Wh Rh . . . . . . . . . . . . . . . . . . 91 91 T T << S+ 0 0 0 3 Tt Lh Fh . . . . . . . . . . . . . . . . . . 92 92 C T < S+ 0 0 0 3 At Gt Gh . . . . . . . . . . . . . . . . . . 93 93 S S < S- 0 0 0 3 Rs Hs Fs . . . . . . . . . . . . . . . . . . 94 94 G + 0 0 0 3 D S Rs . . . . . . . . . . . . . . . . . . 95 95 K - 0 0 0 3 I Gt K . . . . . . . . . . . . . . . . . . 96 96 D > - 0 0 0 2 P Rt . . . . . . . . . . . . . . . . . . . 97 97 T T 3 S+ 0 0 0 3 At Et St . . . . . . . . . . . . . . . . . . 98 98 D T 3 S+ 0 0 0 2 Gt . Et . . . . . . . . . . . . . . . . . . 99 99 K < - 0 0 0 3 E Vs Fs . . . . . . . . . . . . . . . . . . 100 100 F >> - 0 0 0 3 N D E . . . . . . . . . . . . . . . . . . 101 101 D H 3> S+ 0 0 0 3 Eh Kg Kt . . . . . . . . . . . . . . . . . . 102 102 T H 3> S+ 0 0 0 3 Lh Gg Ft . . . . . . . . . . . . . . . . . . 103 103 F H X4 S+ 0 0 0 3 Eh Qg Dt . . . . . . . . . . . . . . . . . . 104 104 R H 3< S+ 0 0 0 1 Ah . . . . . . . . . . . . . . . . . . . . 105 105 L H 3< S- 0 0 0 1 Ah . . . . . . . . . . . . . . . . . . . . 106 106 T << + 0 0 0 2 Gt . Gt . . . . . . . . . . . . . . . . . . 107 107 P - 0 0 0 3 L As Vs . . . . . . . . . . . . . . . . . . 108 108 I - 0 0 0 4 A Ps E . . . . . . . . . . . . . . . . Dt . 109 109 K E -J 120 0D 0 4 We He Ye . . . . . . . . . . . . . . . . Dt . 110 110 G E -J 119 0D 0 4 Te Fe Ke . . . . . . . . . . . . . . . . Et . 111 111 K - 0 0 0 4 S Le Te . . . . . . . . . . . . . . . . Ie . 112 112 Y - 0 0 0 5 S G G . . . . . . . . . . H C . . . . . . 113 113 V S S+ 0 0 0 4 Rs Ht . . . . . . . . . . . Et Tt . . . . . . 114 114 E S S+ 0 0 0 4 Rs . Kt . . . . . . . . . . Nt Gt . . . . . . 115 115 A S S- 0 0 0 5 Vs Tt Tt . . . . . . . . . . Vb I . . . . . . 116 116 P S S+ 0 0 0 3 Ks Gs Gs . . . . . . . . . . . . . . . . . . 117 117 L S S- 0 0 0 3 Ps V V . . . . . . . . . . . . . . . . . . 118 118 I - 0 0 0 3 P Pe Pe . . . . . . . . . . . . . . . . . . 119 119 K E -J 110 0D 0 3 Re Ie Le . . . . . . . . . . . . . . . . . . 120 120 E E > -J 109 0D 0 3 Ie Le Ve . . . . . . . . . . . . . . . . . . 121 121 C T 3 S+ 0 0 0 5 Vt Et T . . . Te . . . . . Gt . . . . . . . . 122 122 V T 3 S+ 0 0 0 7 Et Gt Qt . . . Ee . . . . E At . . . . . . . K 123 123 A < - 0 0 0 14 A A Ae . . It T Ks Kt At St V M . . . St . Et . Pb 124 124 N S S+ 0 0 0 17 Ps Ys Ve Qe Ge Gt Pt Gs Ht G Gt D L . . . Gs Ns Ks . H 125 125 I E - H 0 152B 0 17 Ge Ae Ae Ve Fe Qe G K Ge Qb He Ie Ls . . . R A R . K 126 126 E E -GH 78 151B 0 18 He Ae Ve Re Le Ve E Ve Ve Ae Ae De R . . . Ve Ie Ve Ie L 127 127 C E -GH 77 150B 0 18 Le Ye Ie Ve Ie Le Ye Ve Ie Qe Ve Le Re . . . Ve Le Le Ae Re 128 128 K E -GH 76 149B 0 18 Ee Ee Ee Ee Re Ge Ee Ge . Ge Ge Te Pe . . Gt Ae Ge Ge Ie Le 129 129 V E -GH 75 147B 0 21 Ce Le Ae Ge Ge Ie Ve Ie Ge Ve Ie Le Ie V P L Ie Ie Qe Le Ye 130 130 V E -GH 74 146B 0 17 Ee Ee Ke Ie Se He Ke Ye Ie . . Ee Se K N Ve . He . Te Se 131 131 D E + H 0 145B 0 21 Le Le Ve Te Ae Ve Ee Ge Ve Me Fe Ve I Fe Ve Ve Ve Ve Le Ve I 132 132 I E - 0 0 0 16 Le Le Ve Ee . . Ie . Te Se Re Ae S Ye Ye . Le . He Qe A 133 133 I E - H 0 144B 0 21 Re Ee Ke He Ae Ge Le Ne Ae Ge Ae Le Se Ge Ye Se Ge Ae Ge De Ss 134 134 K E - H 0 143B 0 21 Me Ve Ee V Fe Ge Qs Ge Ge Ge Ae He We He Fe Ve Ge Ge G Ve Gt 135 135 K E - H 0 142B 0 21 Fe He Ce N Re N E Ve G N Ve Le De Re Ge Ne Ae G Ps Ye Dt 136 136 H E + H 0 141B 0 19 Ee Te De Rh Ts Gs Pt Ve Ds . Ce Ge Kt R Qe Ae De Ns . K Ft 137 137 D E > - H 0 140B 0 17 Ve Fe V . Fs . Ft T . Gt Te Dt Rt E Ee Ee E . A P Gt 138 138 I T 3 S- 0 0 0 16 Gt Gt Gs Dt Ks . Gt Rs . Is Rt . . Gt Gt P Gs . T N Ds 139 139 V T 3 S+ 0 0 0 15 Dt Dt Ts Yt Ws . Vs Ss . P Gt . . Nt Lt I Ts . Gg Kh . 140 140 V E < S- H 0 137B 0 16 He He He We A . D G . Ag Ve . At Ie He Se Re . Tg Ds . 141 141 L E - H 0 136B 0 21 Ne De Te Ge Ae Rs L Ae Ns R Ae Dt Kt Qe Ne Ye Te Ss Rs Ye K 142 142 E E - H 0 135B 0 21 Le Le Le Ge Ae D Ae Ve He S Ae Te Te Ye Ve Ae Ae Ie Se Ye Se 143 143 G E -FH 57 134B 0 21 Ie Fe Fe Le Le Ge Le Se Ve Se Ve Ve Ce Le Le Ie Le Le De Ve Ve 144 144 V E -FH 56 133B 0 21 Te Ve Ve Re Ve Fe Ie Ae Ae Le De Re Te Fe Ve Ye Se Ve Qe Ge Se 145 145 A E -FH 55 131B 0 21 Ge Ge Ge Ie Ie Se Re Ie Fe Fe Fe Te Ie Le Ie Me Ve Ae Ye Ge Le 146 146 A E -FH 54 130B 0 21 Se Re Ee Ve Te Ae Le Ae Ie Ee Ve Ie Le Ee De Se Ve Ke Ge Se Ce 147 147 Y E + H 0 129B 0 21 Ve Ve Ae Pe Ve Me K Qe De Re Pe Ae Ye Y L G Te Le Re Le Ve 148 148 F E + 0 0 0 15 Ve Ve Ve Le Ve . P Th Lg Lh Vh Ms . . . Gh We . Vh Ee . 149 149 D E - H 0 128B 0 16 Se Ae De Ee Se L D Eh Rg Qh Eh As . . . Dh . V Fh Ae . 150 150 T E - H 0 127B 0 10 Ae Ve Ae Ie Ae L . . . . . S . . . Vh . T . Is . 151 151 S E - H 0 126B 0 9 Se We Ee Ee Ee Rg . . . . . . . . . A . Qg . Q . 152 152 R E - H 0 125B 0 10 Ve Ee Ve Fe Qe Sg . . . Le . . . . . P . Eg . P . 153 153 K > - 0 0 0 8 R E L We T . . . . V . . . . . As . . . Q . 154 154 E T 3 S+ 0 0 0 7 St Et K H . . . . . T . . . . . As . . . H . 155 155 K T 3 S+ 0 0 0 5 Gt Gt . De . . . . . G . . . . . . . . . Y . 156 156 R < + 0 0 0 3 A Ls . Re . . . . . . . . . . . . . . . . . 157 157 T E -K 162 0E 0 3 Ve Lb . Fe . . . . . . . . . . . . . . . . . 158 158 L E > S-K 161 0E 0 4 Ke D . Re . . . . . . . . . . . . . . . R . 159 159 H T 3 S- 0 0 0 7 Et Et . Le . . . . . . . . D . . . . . G K Ie 160 160 A T 3 S+ 0 0 0 7 Gt Kt . A . . . . . . . . Et . . . . . A T Ke 161 161 V E < S-K 158 0E 0 7 Le R . P . . . . . . . . Tt . . . . . Qs Ph G 162 162 G E -K 157 0E 0 5 Le Pb . . . . . . . . . . Ts . . . . . Fe . Vh 163 163 D >> + 0 0 0 3 D K . . . . . . . . . . . . . . . . Ie . . 164 164 G H 3> S+ 0 0 0 3 Vh Pt . . . . . . . . . . . . . . . . D . . 165 165 T H 34 S+ 0 0 0 2 Eh Gt . . . . . . . . . . . . . . . . . . . 166 166 F H <4 S+ 0 0 0 2 Sh . D . . . . . . . . . . . . . . . . . . 167 167 V H < S- 0 0 0 2 Vh . A . . . . . . . . . . . . . . . . . . 168 168 V < - 0 0 0 4 K L E . . . . . . . . . . . . . . . . V . 169 169 D B -I 81 0C 0 4 Pb Ab Vb . . . . . . . . . . . . . . . . Gs . 170 170 G - 0 0 0 4 Ve L L . . . . . . . . . . . . . . . . Lb . 171 171 R E -A 24 0A 0 4 Le Le Tb . . . . . . . . . . . . . . . . T . 172 172 T E +A 23 0A 0 3 He Ye Yh . . . . . . . . . . . . . . . . . . 173 173 L - 0 0 0 3 Ve Ye Ah . . . . . . . . . . . . . . . . . . 174 174 D S S+ 0 0 0 4 Ge Ge Hh . . . . . . . . . . . . . . . . R . 175 175 R 0 0 0 5 Gt Kt Lh . . . He . . . . . . . . . . . . M . 176 176 K 0 0 0 5 Nt Gt Mh . . . Re . . . . . . . . . . . . S . ## EQUIVALENCES: ranges of aligned residues NR. STRID1 STRID2 STRID1 <=> STRID2 STRID1 <=> STRID2 1: 6281 1eje-A 1 - 176 <=> 5 - 180 (ALA 1 - LYS 176 <=> ALA A 5 - ASN A 180) 2: 6281 1usc-A 7 - 12 <=> 1 - 6 (ALA 7 - ASP 12 <=> MET A 1 - ALA A 6) 2: 6281 1usc-A 13 - 16 <=> 10 - 13 (LEU 13 - ALA 16 <=> LEU A 10 - PHE A 13) 2: 6281 1usc-A 18 - 32 <=> 14 - 28 (THR 18 - ALA 32 <=> TYR A 14 - VAL A 28) 2: 6281 1usc-A 34 - 92 <=> 29 - 87 (GLY 34 - CYS 92 <=> GLU A 29 - GLY A 87) 2: 6281 1usc-A 93 - 97 <=> 89 - 93 (SER 93 - THR 97 <=> HIS A 89 - GLU A 93) 2: 6281 1usc-A 99 - 103 <=> 94 - 98 (LYS 99 - PHE 103 <=> VAL A 94 - GLN A 98) 2: 6281 1usc-A 107 - 113 <=> 99 - 105 (PRO 107 - VAL 113 <=> ALA A 99 - HIS A 105) 2: 6281 1usc-A 115 - 160 <=> 106 - 151 (ALA 115 - ALA 160 <=> THR A 106 - LYS A 151) 2: 6281 1usc-A 161 - 165 <=> 153 - 157 (VAL 161 - THR 165 <=> ARG A 153 - GLY A 157) 2: 6281 1usc-A 168 - 176 <=> 158 - 166 (VAL 168 - LYS 176 <=> LEU A 158 - GLY A 166) 3: 6281 1i0r-A 11 - 16 <=> 1 - 6 (MET 11 - ALA 16 <=> MET A 1 - PHE A 6) 3: 6281 1i0r-A 18 - 21 <=> 7 - 10 (THR 18 - GLU 21 <=> TYR A 7 - SER A 10) 3: 6281 1i0r-A 23 - 33 <=> 11 - 21 (GLY 23 - GLY 33 <=> TYR A 11 - ASN A 21) 3: 6281 1i0r-A 35 - 86 <=> 22 - 73 (THR 35 - VAL 86 <=> GLY A 22 - MET A 73) 3: 6281 1i0r-A 87 - 95 <=> 75 - 83 (VAL 87 - LYS 95 <=> PHE A 75 - LYS A 83) 3: 6281 1i0r-A 97 - 103 <=> 85 - 91 (THR 97 - PHE 103 <=> SER A 85 - ASP A 91) 3: 6281 1i0r-A 106 - 112 <=> 92 - 98 (THR 106 - TYR 112 <=> GLY A 92 - GLY A 98) 3: 6281 1i0r-A 114 - 122 <=> 99 - 107 (GLU 114 - VAL 122 <=> LYS A 99 - GLN A 107) 3: 6281 1i0r-A 123 - 154 <=> 109 - 140 (ALA 123 - GLU 154 <=> ALA A 109 - LYS A 140) 3: 6281 1i0r-A 166 - 173 <=> 141 - 148 (PHE 166 - LEU 173 <=> ASP A 141 - ALA A 148) 3: 6281 1i0r-A 174 - 176 <=> 151 - 153 (ASP 174 - LYS 176 <=> HIS A 151 - MET A 153) 4: 6281 1ci0-A 22 - 33 <=> 31 - 42 (PRO 22 - GLY 33 <=> LEU A 54 - LEU A 65) 4: 6281 1ci0-A 34 - 49 <=> 44 - 59 (GLY 34 - PHE 49 <=> SER A 67 - HIS A 82) 4: 6281 1ci0-A 53 - 60 <=> 60 - 67 (LEU 53 - TRP 60 <=> ARG A 83 - ASN A 90) 4: 6281 1ci0-A 61 - 84 <=> 69 - 92 (ASN 61 - ASP 84 <=> GLY A 92 - LEU A 115) 4: 6281 1ci0-A 124 - 136 <=> 95 - 107 (ASN 124 - HIS 136 <=> GLN A 118 - ARG A 130) 4: 6281 1ci0-A 138 - 153 <=> 161 - 176 (ILE 138 - LYS 153 <=> ASP A 184 - TRP A 199) 4: 6281 1ci0-A 154 - 157 <=> 184 - 187 (GLU 154 - THR 157 <=> HIS A 207 - PHE A 210) 4: 6281 1ci0-A 158 - 161 <=> 202 - 205 (LEU 158 - VAL 161 <=> ARG A 225 - PRO A 228) 5: 6281 1axj 21 - 33 <=> 11 - 23 (GLU 21 - GLY 33 <=> LYS 11 - GLU 23) 5: 6281 1axj 35 - 43 <=> 24 - 32 (THR 35 - TRP 43 <=> ASP 24 - TRP 32) 5: 6281 1axj 44 - 49 <=> 35 - 40 (THR 44 - PHE 49 <=> TYR 35 - ASP 40) 5: 6281 1axj 52 - 80 <=> 41 - 69 (LYS 52 - VAL 80 <=> GLY 41 - GLY 69) 5: 6281 1axj 82 - 85 <=> 77 - 80 (LEU 82 - LYS 85 <=> ASN 77 - GLY 80) 5: 6281 1axj 124 - 131 <=> 82 - 89 (ASN 124 - ASP 131 <=> GLY 82 - ALA 89) 5: 6281 1axj 133 - 136 <=> 90 - 93 (ILE 133 - HIS 136 <=> ALA 90 - THR 93) 5: 6281 1axj 137 - 140 <=> 104 - 107 (ASP 137 - VAL 140 <=> PHE 104 - ALA 107) 5: 6281 1axj 141 - 153 <=> 109 - 121 (LEU 141 - LYS 153 <=> ALA 109 - THR 121) 6: 6281 1cqq-A 24 - 50 <=> 98 - 124 (PRO 24 - THR 50 <=> PRO A 98 - ASN A 124) 6: 6281 1cqq-A 51 - 60 <=> 132 - 141 (PRO 51 - TRP 60 <=> THR A 132 - PRO A 141) 6: 6281 1cqq-A 66 - 69 <=> 143 - 146 (ALA 66 - LYS 69 <=> LYS A 143 - TYR A 146) 6: 6281 1cqq-A 73 - 79 <=> 147 - 153 (CYS 73 - THR 79 <=> CYS A 147 - LYS A 153) 6: 6281 1cqq-A 123 - 131 <=> 154 - 162 (ALA 123 - ASP 131 <=> ILE A 154 - VAL A 162) 6: 6281 1cqq-A 133 - 136 <=> 163 - 166 (ILE 133 - HIS 136 <=> GLY A 163 - GLY A 166) 6: 6281 1cqq-A 141 - 147 <=> 167 - 173 (LEU 141 - TYR 147 <=> ARG A 167 - MET A 173) 6: 6281 1cqq-A 149 - 152 <=> 174 - 177 (ASP 149 - ARG 152 <=> LEU A 174 - SER A 177) 7: 6281 1agj-A 1 - 8 <=> 4 - 11 (ALA 1 - MET 8 <=> ALA A 4 - GLU A 11) 7: 6281 1agj-A 9 - 12 <=> 15 - 18 (LYS 9 - ASP 12 <=> ASN A 15 - TYR A 18) 7: 6281 1agj-A 21 - 24 <=> 41 - 44 (GLU 21 - PRO 24 <=> TYR A 41 - ASN A 44) 7: 6281 1agj-A 25 - 31 <=> 46 - 52 (VAL 25 - SER 31 <=> ILE A 46 - LYS A 52) 7: 6281 1agj-A 36 - 42 <=> 53 - 59 (ASN 36 - SER 42 <=> GLY A 53 - GLY A 59) 7: 6281 1agj-A 44 - 48 <=> 60 - 64 (THR 44 - ASP 48 <=> VAL A 60 - LYS A 64) 7: 6281 1agj-A 54 - 61 <=> 65 - 72 (ALA 54 - ASN 61 <=> ASN A 65 - HIS A 72) 7: 6281 1agj-A 65 - 73 <=> 73 - 81 (LYS 65 - CYS 73 <=> ILE A 73 - PRO A 81) 7: 6281 1agj-A 74 - 79 <=> 83 - 88 (VAL 74 - THR 79 <=> LYS A 83 - PRO A 88) 7: 6281 1agj-A 80 - 83 <=> 90 - 93 (VAL 80 - LEU 83 <=> ILE A 90 - ASP A 93) 7: 6281 1agj-A 121 - 124 <=> 98 - 101 (CYS 121 - ASN 124 <=> THR A 98 - PRO A 101) 7: 6281 1agj-A 125 - 137 <=> 103 - 115 (ILE 125 - ASP 137 <=> GLY A 103 - PHE A 115) 7: 6281 1agj-A 138 - 149 <=> 118 - 129 (ILE 138 - ASP 149 <=> GLY A 118 - ASP A 129) 7: 6281 1agj-A 175 - 176 <=> 171 - 172 (ARG 175 - LYS 176 <=> HIS A 171 - ARG A 172) 8: 6281 1bef-A 24 - 31 <=> 89 - 96 (PRO 24 - SER 31 <=> GLU A 93 - LEU A 100) 8: 6281 1bef-A 37 - 42 <=> 97 - 102 (ASN 37 - SER 42 <=> GLU A 101 - PRO A 106) 8: 6281 1bef-A 45 - 48 <=> 103 - 106 (MET 45 - ASP 48 <=> ARG A 107 - GLN A 110) 8: 6281 1bef-A 54 - 58 <=> 107 - 111 (ALA 54 - GLY 58 <=> THR A 111 - LEU A 115) 8: 6281 1bef-A 60 - 63 <=> 123 - 126 (TRP 60 - SER 63 <=> SER A 127 - PHE A 130) 8: 6281 1bef-A 66 - 69 <=> 127 - 130 (ALA 66 - LYS 69 <=> SER A 131 - THR A 134) 8: 6281 1bef-A 73 - 80 <=> 131 - 138 (CYS 73 - VAL 80 <=> SER A 135 - LYS A 142) 8: 6281 1bef-A 123 - 131 <=> 139 - 147 (ALA 123 - ASP 131 <=> LYS A 143 - GLY A 151) 8: 6281 1bef-A 133 - 141 <=> 148 - 156 (ILE 133 - LEU 141 <=> ASN A 152 - ALA A 160) 8: 6281 1bef-A 142 - 149 <=> 158 - 165 (GLU 142 - ASP 149 <=> VAL A 162 - GLU A 169) 9: 6281 2hrv-A 24 - 32 <=> 55 - 63 (PRO 24 - ALA 32 <=> THR A 55 - HIS A 63) 9: 6281 2hrv-A 36 - 43 <=> 64 - 71 (ASN 36 - TRP 43 <=> LYS A 64 - THR A 71) 9: 6281 2hrv-A 45 - 50 <=> 72 - 77 (MET 45 - THR 50 <=> VAL A 72 - TRP A 77) 9: 6281 2hrv-A 51 - 59 <=> 91 - 99 (PRO 51 - PRO 59 <=> GLN A 91 - GLY A 99) 9: 6281 2hrv-A 66 - 69 <=> 102 - 105 (ALA 66 - LYS 69 <=> GLU A 102 - ASP A 105) 9: 6281 2hrv-A 73 - 79 <=> 106 - 112 (CYS 73 - THR 79 <=> CYS A 106 - CYS A 112) 9: 6281 2hrv-A 123 - 127 <=> 113 - 117 (ALA 123 - CYS 127 <=> LYS A 113 - ILE A 117) 9: 6281 2hrv-A 129 - 136 <=> 118 - 125 (VAL 129 - HIS 136 <=> GLY A 118 - ASP A 125) 9: 6281 2hrv-A 141 - 149 <=> 126 - 134 (LEU 141 - ASP 149 <=> ASN A 126 - ARG A 134) 10: 6281 1qq4-A 23 - 32 <=> 97 - 106 (GLY 23 - ALA 32 <=> GLY A 97 - THR A 106) 10: 6281 1qq4-A 38 - 50 <=> 108 - 120 (VAL 38 - THR 50 <=> GLY A 108 - THR A 120) 10: 6281 1qq4-A 51 - 59 <=> 128 - 136 (PRO 51 - PRO 59 <=> VAL A 128 - ALA A 136) 10: 6281 1qq4-A 65 - 69 <=> 138 - 142 (LYS 65 - LYS 69 <=> MET A 138 - ASP A 142) 10: 6281 1qq4-A 73 - 80 <=> 143 - 150 (CYS 73 - VAL 80 <=> SER A 143 - SER A 150) 10: 6281 1qq4-A 123 - 129 <=> 151 - 157 (ALA 123 - VAL 129 <=> ALA A 151 - VAL A 157) 10: 6281 1qq4-A 131 - 135 <=> 158 - 162 (ASP 131 - LYS 135 <=> MET A 158 - ASN A 162) 10: 6281 1qq4-A 137 - 140 <=> 171 - 174 (ASP 137 - VAL 140 <=> GLY A 171 - ALA A 174) 10: 6281 1qq4-A 141 - 149 <=> 177 - 185 (LEU 141 - ASP 149 <=> ARG A 177 - GLN A 185) 10: 6281 1qq4-A 152 - 155 <=> 195 - 198 (ARG 152 - LYS 155 <=> LEU A 195 - GLY A 198) 11: 6281 1jxp-A 24 - 32 <=> 100 - 108 (PRO 24 - ALA 32 <=> SER A 102 - HIS A 110) 11: 6281 1jxp-A 37 - 43 <=> 109 - 115 (ASN 37 - TRP 43 <=> ALA A 111 - ARG A 117) 11: 6281 1jxp-A 45 - 48 <=> 116 - 119 (MET 45 - ASP 48 <=> ARG A 118 - ASP A 121) 11: 6281 1jxp-A 55 - 58 <=> 120 - 123 (ILE 55 - GLY 58 <=> SER A 122 - SER A 125) 11: 6281 1jxp-A 59 - 62 <=> 127 - 130 (PRO 59 - PHE 62 <=> PRO A 129 - VAL A 132) 11: 6281 1jxp-A 66 - 69 <=> 133 - 136 (ALA 66 - LYS 69 <=> LEU A 135 - SER A 138) 11: 6281 1jxp-A 73 - 80 <=> 137 - 144 (CYS 73 - VAL 80 <=> SER A 139 - PRO A 146) 11: 6281 1jxp-A 123 - 129 <=> 145 - 151 (ALA 123 - VAL 129 <=> SER A 147 - ILE A 153) 11: 6281 1jxp-A 131 - 141 <=> 152 - 162 (ASP 131 - LEU 141 <=> PHE A 154 - ALA A 164) 11: 6281 1jxp-A 142 - 149 <=> 164 - 171 (GLU 142 - ASP 149 <=> ALA A 166 - GLU A 173) 12: 6281 1sky-E 44 - 50 <=> 5 - 11 (THR 44 - THR 50 <=> ARG E 5 - GLY E 11) 12: 6281 1sky-E 53 - 60 <=> 12 - 19 (LEU 53 - TRP 60 <=> PRO E 12 - GLU E 19) 12: 6281 1sky-E 62 - 66 <=> 20 - 24 (PHE 62 - ALA 66 <=> ASN E 20 - PRO E 24) 12: 6281 1sky-E 73 - 84 <=> 28 - 39 (CYS 73 - ASP 84 <=> ASN E 28 - GLU E 39) 12: 6281 1sky-E 122 - 137 <=> 41 - 56 (VAL 122 - ASP 137 <=> GLU E 41 - ASP E 56) 12: 6281 1sky-E 141 - 150 <=> 57 - 66 (LEU 141 - THR 150 <=> ASP E 57 - SER E 66) 13: 6281 1ep2-B 38 - 42 <=> 3 - 7 (VAL 38 - SER 42 <=> LEU B 4 - MET B 8) 13: 6281 1ep2-B 44 - 51 <=> 8 - 15 (THR 44 - PRO 51 <=> THR B 9 - VAL B 16) 13: 6281 1ep2-B 52 - 60 <=> 19 - 27 (LYS 52 - TRP 60 <=> ILE B 20 - THR B 28) 13: 6281 1ep2-B 65 - 72 <=> 28 - 35 (LYS 65 - GLU 72 <=> LEU B 29 - PRO B 36) 13: 6281 1ep2-B 73 - 81 <=> 37 - 45 (CYS 73 - ASP 81 <=> GLN B 38 - ASN B 46) 13: 6281 1ep2-B 121 - 137 <=> 46 - 62 (CYS 121 - ASP 137 <=> GLY B 47 - ARG B 63) 13: 6281 1ep2-B 140 - 147 <=> 63 - 70 (VAL 140 - TYR 147 <=> ALA B 64 - TYR B 71) 13: 6281 1ep2-B 159 - 162 <=> 74 - 77 (HIS 159 - GLY 162 <=> ASP B 75 - THR B 78) 14: 6281 1ia8-A 23 - 26 <=> 14 - 17 (GLY 23 - THR 26 <=> LEU A 15 - GLY A 18) 14: 6281 1ia8-A 41 - 50 <=> 18 - 27 (ILE 41 - THR 50 <=> ALA A 19 - ASN A 28) 14: 6281 1ia8-A 51 - 61 <=> 31 - 41 (PRO 51 - ASN 61 <=> GLU A 32 - MET A 42) 14: 6281 1ia8-A 62 - 73 <=> 44 - 55 (PHE 62 - CYS 73 <=> CYS A 48 - ASN A 59) 14: 6281 1ia8-A 112 - 115 <=> 60 - 63 (TYR 112 - ALA 115 <=> HIS A 64 - VAL A 67) 14: 6281 1ia8-A 129 - 147 <=> 64 - 82 (VAL 129 - TYR 147 <=> VAL A 68 - TYR A 86) 15: 6281 1csn 24 - 27 <=> 13 - 16 (PRO 24 - LEU 27 <=> ILE 18 - GLY 21) 15: 6281 1csn 41 - 50 <=> 17 - 26 (ILE 41 - THR 50 <=> SER 22 - ASN 31) 15: 6281 1csn 51 - 62 <=> 30 - 41 (PRO 51 - PHE 62 <=> ASN 35 - ARG 46) 15: 6281 1csn 63 - 73 <=> 44 - 54 (SER 63 - CYS 73 <=> ALA 49 - TYR 59) 15: 6281 1csn 112 - 115 <=> 60 - 63 (TYR 112 - ALA 115 <=> CYS 65 - ILE 68) 15: 6281 1csn 129 - 147 <=> 64 - 82 (VAL 129 - TYR 147 <=> PRO 69 - LEU 87) 16: 6281 1vde-A 44 - 60 <=> 307 - 323 (THR 44 - TRP 60 <=> ASP A 326 - ILE A 342) 16: 6281 1vde-A 62 - 74 <=> 324 - 336 (PHE 62 - VAL 74 <=> HIS A 343 - ARG A 355) 16: 6281 1vde-A 128 - 131 <=> 339 - 342 (LYS 128 - ASP 131 <=> GLY A 358 - VAL A 361) 16: 6281 1vde-A 133 - 138 <=> 343 - 348 (ILE 133 - ILE 138 <=> SER A 362 - PRO A 367) 16: 6281 1vde-A 139 - 150 <=> 354 - 365 (VAL 139 - THR 150 <=> ILE A 379 - VAL A 390) 16: 6281 1vde-A 151 - 154 <=> 382 - 385 (SER 151 - GLU 154 <=> ALA A 407 - ALA A 410) 17: 6281 1svp-A 23 - 29 <=> 80 - 86 (GLY 23 - THR 29 <=> GLU A 186 - HIS A 192) 17: 6281 1svp-A 40 - 43 <=> 88 - 91 (THR 40 - TRP 43 <=> GLY A 194 - GLN A 197) 17: 6281 1svp-A 45 - 48 <=> 92 - 95 (MET 45 - ASP 48 <=> TYR A 198 - GLY A 201) 17: 6281 1svp-A 56 - 63 <=> 96 - 103 (THR 56 - SER 63 <=> ARG A 202 - VAL A 209) 17: 6281 1svp-A 70 - 73 <=> 105 - 108 (SER 70 - CYS 73 <=> GLY A 211 - ASP A 214) 17: 6281 1svp-A 74 - 80 <=> 110 - 116 (VAL 74 - VAL 80 <=> GLY A 216 - ASN A 222) 17: 6281 1svp-A 123 - 129 <=> 117 - 123 (ALA 123 - VAL 129 <=> SER A 223 - ILE A 229) 17: 6281 1svp-A 131 - 148 <=> 124 - 141 (ASP 131 - PHE 148 <=> VAL A 230 - TRP A 247) 18: 6281 1hav-A 23 - 33 <=> 114 - 124 (GLY 23 - GLY 33 <=> ASN A 114 - ASN A 124) 18: 6281 1hav-A 35 - 50 <=> 125 - 140 (THR 35 - THR 50 <=> GLY A 125 - LYS A 140) 18: 6281 1hav-A 52 - 60 <=> 158 - 166 (LYS 52 - TRP 60 <=> ASP A 158 - GLU A 166) 18: 6281 1hav-A 66 - 69 <=> 168 - 171 (ALA 66 - LYS 69 <=> LEU A 168 - MET A 171) 18: 6281 1hav-A 73 - 83 <=> 172 - 182 (CYS 73 - LEU 83 <=> CYS A 172 - SER A 182) 18: 6281 1hav-A 124 - 131 <=> 185 - 192 (ASN 124 - ASP 131 <=> ASN A 185 - VAL A 192) 18: 6281 1hav-A 133 - 136 <=> 193 - 196 (ILE 133 - HIS 136 <=> ALA A 193 - ASN A 196) 18: 6281 1hav-A 141 - 147 <=> 197 - 203 (LEU 141 - TYR 147 <=> SER A 197 - LEU A 203) 18: 6281 1hav-A 149 - 152 <=> 204 - 207 (ASP 149 - ARG 152 <=> VAL A 204 - GLU A 207) 19: 6281 1arb 24 - 44 <=> 142 - 162 (PRO 24 - THR 44 <=> PRO 142 - SER 162) 19: 6281 1arb 45 - 49 <=> 164 - 168 (MET 45 - PHE 49 <=> THR 164 - ALA 168) 19: 6281 1arb 50 - 65 <=> 173 - 188 (THR 50 - LYS 65 <=> ALA 173 - VAL 188) 19: 6281 1arb 69 - 72 <=> 189 - 192 (LYS 69 - GLU 72 <=> THR 189 - GLY 192) 19: 6281 1arb 73 - 80 <=> 194 - 201 (CYS 73 - VAL 80 <=> SER 194 - PRO 201) 19: 6281 1arb 123 - 129 <=> 202 - 208 (ALA 123 - VAL 129 <=> GLU 202 - GLN 208) 19: 6281 1arb 131 - 135 <=> 209 - 213 (ASP 131 - LYS 135 <=> LEU 209 - PRO 213) 19: 6281 1arb 137 - 140 <=> 218 - 221 (ASP 137 - VAL 140 <=> ALA 218 - THR 221) 19: 6281 1arb 141 - 149 <=> 223 - 231 (LEU 141 - ASP 149 <=> ARG 223 - PHE 231) 19: 6281 1arb 159 - 164 <=> 254 - 259 (HIS 159 - GLY 164 <=> GLY 254 - ASP 259) 20: 6281 1g8f-A 24 - 27 <=> 38 - 41 (PRO 24 - LEU 27 <=> PRO A 39 - LEU A 42) 20: 6281 1g8f-A 50 - 56 <=> 53 - 59 (THR 50 - THR 56 <=> SER A 54 - LEU A 60) 20: 6281 1g8f-A 57 - 62 <=> 85 - 90 (THR 57 - PHE 62 <=> LEU A 86 - ALA A 91) 20: 6281 1g8f-A 65 - 78 <=> 91 - 104 (LYS 65 - PRO 78 <=> PHE A 92 - PHE A 105) 20: 6281 1g8f-A 108 - 111 <=> 106 - 109 (ILE 108 - LYS 111 <=> ASP A 107 - ILE A 110) 20: 6281 1g8f-A 126 - 139 <=> 111 - 124 (GLU 126 - VAL 139 <=> ILE A 112 - LYS A 125) 20: 6281 1g8f-A 140 - 151 <=> 150 - 161 (VAL 140 - SER 151 <=> ASP A 151 - GLN A 162) 20: 6281 1g8f-A 152 - 155 <=> 163 - 166 (ARG 152 - LYS 155 <=> PRO A 164 - TYR A 167) 20: 6281 1g8f-A 158 - 161 <=> 172 - 175 (LEU 158 - VAL 161 <=> ARG A 173 - PRO A 176) 20: 6281 1g8f-A 168 - 171 <=> 224 - 227 (VAL 168 - ARG 171 <=> VAL A 225 - THR A 228) 20: 6281 1g8f-A 174 - 176 <=> 263 - 265 (ASP 174 - LYS 176 <=> ARG A 264 - SER A 266) 21: 6281 1fnc 36 - 39 <=> 11 - 14 (ASN 36 - MET 39 <=> VAL 29 - PHE 32) 21: 6281 1fnc 40 - 51 <=> 19 - 30 (THR 40 - PRO 51 <=> PRO 37 - ILE 48) 21: 6281 1fnc 52 - 61 <=> 39 - 48 (LYS 52 - ASN 61 <=> THR 57 - GLY 66) 21: 6281 1fnc 65 - 68 <=> 49 - 52 (LYS 65 - THR 68 <=> GLU 67 - TYR 70) 21: 6281 1fnc 70 - 83 <=> 53 - 66 (SER 70 - LEU 83 <=> ARG 71 - ASP 84) 21: 6281 1fnc 122 - 133 <=> 70 - 81 (VAL 122 - ILE 133 <=> LYS 88 - SER 99) 21: 6281 1fnc 134 - 138 <=> 85 - 89 (LYS 134 - ILE 138 <=> GLY 103 - ASP 107) 21: 6281 1fnc 141 - 147 <=> 91 - 97 (LEU 141 - TYR 147 <=> LYS 109 - VAL 115) 21: 6281 1fnc 159 - 162 <=> 110 - 113 (HIS 159 - GLY 162 <=> ILE 128 - VAL 131) ## MATRICES: UX+T is the least-squares superimposition of STRID2 (X) onto STRID1 NR. STRID1 STRID2 U(.,1) U(.,2) U(.,3) T(.) 1: 6281 1eje-A U(1,.) 1.000000 0.000247 0.000253 -0.014587 1: 6281 1eje-A U(2,.) -0.000247 1.000000 0.000258 0.002683 1: 6281 1eje-A U(3,.) -0.000253 -0.000258 1.000000 0.027076 2: 6281 1usc-A U(1,.) 0.704071 -0.140923 -0.696006 3.728437 2: 6281 1usc-A U(2,.) 0.709654 0.175476 0.682348 -13.136435 2: 6281 1usc-A U(3,.) 0.025974 -0.974345 0.223554 1.012631 3: 6281 1i0r-A U(1,.) 0.845695 0.327788 -0.421135 44.875134 3: 6281 1i0r-A U(2,.) 0.270662 0.416663 0.867833 -34.559521 3: 6281 1i0r-A U(3,.) 0.459936 -0.847908 0.263650 -2.692097 4: 6281 1ci0-A U(1,.) -0.302667 -0.920976 -0.245349 19.486498 4: 6281 1ci0-A U(2,.) -0.777841 0.089929 0.621993 22.288969 4: 6281 1ci0-A U(3,.) -0.550777 0.379099 -0.743592 8.116940 5: 6281 1axj U(1,.) 0.609066 -0.645987 0.460151 25.922987 5: 6281 1axj U(2,.) 0.435069 -0.212971 -0.874848 35.750801 5: 6281 1axj U(3,.) 0.663139 0.733037 0.151335 28.724596 6: 6281 1cqq-A U(1,.) 0.744203 -0.353446 -0.566778 24.207354 6: 6281 1cqq-A U(2,.) 0.646311 0.595282 0.477411 13.341979 6: 6281 1cqq-A U(3,.) 0.168654 -0.721606 0.671447 2.779978 7: 6281 1agj-A U(1,.) 0.717066 -0.051021 -0.695136 44.268818 7: 6281 1agj-A U(2,.) 0.118212 0.991771 0.049148 38.896118 7: 6281 1agj-A U(3,.) 0.686908 -0.117416 0.717196 12.243973 8: 6281 1bef-A U(1,.) 0.815149 0.211260 -0.539352 -3.007039 8: 6281 1bef-A U(2,.) 0.170690 -0.977382 -0.124860 93.839325 8: 6281 1bef-A U(3,.) -0.553531 0.009718 -0.832772 72.500587 9: 6281 2hrv-A U(1,.) 0.280038 0.772520 -0.569905 15.400887 9: 6281 2hrv-A U(2,.) 0.946215 -0.121916 0.299688 5.010561 9: 6281 2hrv-A U(3,.) 0.162034 -0.623176 -0.765112 58.899178 10: 6281 1qq4-A U(1,.) 0.673015 0.630846 -0.386115 -10.109333 10: 6281 1qq4-A U(2,.) 0.670362 -0.740847 -0.041947 44.767632 10: 6281 1qq4-A U(3,.) -0.312514 -0.230606 -0.921497 56.779507 11: 6281 1jxp-A U(1,.) 0.874241 0.202802 -0.441105 -7.300969 11: 6281 1jxp-A U(2,.) 0.171880 -0.979018 -0.109459 93.283272 11: 6281 1jxp-A U(3,.) -0.454048 0.019876 -0.890755 70.452255 12: 6281 1sky-E U(1,.) -0.965395 -0.249902 -0.074577 102.554832 12: 6281 1sky-E U(2,.) -0.222235 0.937952 -0.266190 -8.916052 12: 6281 1sky-E U(3,.) 0.136471 -0.240405 -0.961031 72.681259 13: 6281 1ep2-B U(1,.) 0.975331 0.123132 -0.183214 -19.966158 13: 6281 1ep2-B U(2,.) -0.185655 0.906557 -0.379060 49.175644 13: 6281 1ep2-B U(3,.) 0.119420 0.403724 0.907054 -0.615577 14: 6281 1ia8-A U(1,.) 0.439050 -0.891899 -0.108404 17.655277 14: 6281 1ia8-A U(2,.) 0.775122 0.314997 0.547689 22.671633 14: 6281 1ia8-A U(3,.) -0.454336 -0.324489 0.829630 24.065273 15: 6281 1csn U(1,.) -0.321456 -0.897148 -0.302971 78.776672 15: 6281 1csn U(2,.) 0.626082 0.038673 -0.778798 92.670692 15: 6281 1csn U(3,.) 0.710414 -0.440034 0.549256 40.489346 16: 6281 1vde-A U(1,.) -0.136075 0.758762 0.636995 -9.589604 16: 6281 1vde-A U(2,.) -0.719148 -0.517891 0.463266 61.558449 16: 6281 1vde-A U(3,.) 0.681403 -0.395055 0.616135 -12.584717 17: 6281 1svp-A U(1,.) -0.366649 0.258760 0.893651 16.221027 17: 6281 1svp-A U(2,.) -0.465347 0.780749 -0.416993 38.040165 17: 6281 1svp-A U(3,.) -0.805618 -0.568748 -0.165847 28.911013 18: 6281 1hav-A U(1,.) 0.474468 -0.852969 0.217540 14.923014 18: 6281 1hav-A U(2,.) -0.356868 -0.412295 -0.838247 39.367302 18: 6281 1hav-A U(3,.) 0.804689 0.320088 -0.500019 29.470533 19: 6281 1arb U(1,.) -0.590721 -0.075869 0.803301 10.568291 19: 6281 1arb U(2,.) -0.219337 -0.942981 -0.250355 31.891052 19: 6281 1arb U(3,.) 0.776492 -0.324084 0.540398 30.477303 20: 6281 1g8f-A U(1,.) 0.582396 -0.706347 -0.402355 91.851891 20: 6281 1g8f-A U(2,.) 0.407737 -0.174369 0.896296 21.796045 20: 6281 1g8f-A U(3,.) -0.703254 -0.686054 0.186452 9.551754 21: 6281 1fnc U(1,.) 0.762817 -0.499573 -0.410533 3.092161 21: 6281 1fnc U(2,.) -0.393156 0.145720 -0.907851 59.748150 21: 6281 1fnc U(3,.) 0.513361 0.853928 -0.085253 10.296885 ## FOOTER References: L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. Parameters elastic similarity score, threshold 0.20; sequential alignment The following notation is used for data columns: STRID1/STRID2 PDB identifiers of search structure and aligned structure with chain identifier Z Z-score, i.e., strength of structural similarity in standard deviations above expexted. The matched structures are sorted by Z-score. Only matches above a threshold of Z=2 are reported. RMSD positional root mean square deviation of superimposed CA atoms in Angstroms LALI total number of equivalenced residues LSEQ2 length of the entire chain of the equivalenced structure %IDE percentage of sequence identity over equivalenced positions REVERS number of fragments matching in reversed chain direction PERMUT number of topological permutations (loop reconnections between query and matched structure) NFRAG total number of equivalenced fragments TOPO 'S' sequential connectivity of equivalenced fragments 'N' non-sequential alignment PROTEIN COMPND record from the PDB file of the aligned structure SeqNo, PDBNo, AA, STRUCTURE, BP1, BP2, ACC sequential and PDB residue numbers, amino acid (lower case = Cys),secondary structure, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637, 1983). The alignments block shows the amino acid sequence and DSSP code (in lower case) of the equivalenced fragments. OCC number of equivalences spanning this position STRID1 <=> STRID2 sequential residue numbers of equivalenced fragments (PDB residue numbers in parentheses); any topological permutations and matches in reverse chain direction are flagged e-mail Holm@ebi.ac.uk (Internet) anonymous ftp ftp://ftp.ebi.ac.uk/pub/databases/fssp WWW URL http://www.ebi.ac.uk/dali/fssp/ Availability: Under the terms of the GNU Library General Public License. //