Welcome to the SWISS-MODEL Protein Modelling Server     

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Dear ,

Title of your Request: TARGET1

Swiss-Model '(SWISS-MODEL Version 36.0003)' started on 16-Feb-2004

Process identification is AAAa0ZspE

The modelling procedure is now in progress, and its results should be
sent to you shortly.


In case of difficulties, please contact:

   Torsten Schwede     <Torsten.Schwede@isb-sib.ch>
   Nicolas Guex        

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If results of this search are reported or published, please cite
the following publications:

    Schwede T, Kopp J, Guex N, and Peitsch MC (2003) 
    SWISS-MODEL: an automated protein homology-modeling server. 
    Nucleic Acids Research 31: 3381-3385.

    Guex, N. and Peitsch, M. C. (1997) 
    SWISS-MODEL and the Swiss-PdbViewer: An environment for 
    comparative protein modelling. 
    Electrophoresis 18:2714-2723. 

    Peitsch, M. C.  (1995)
    Protein modeling by E-mail
    Bio/Technology  13,658-660.

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Contact Adresses:

  (1) for SWISS-MODEL
  (2) for Swiss-PdbViewer, PC version.
  (3) for Swiss-PdbViewer, Macintosh and SGI version.

(1,2)  Dr. Torsten Schwede
       
       Biozentrum der Universität Basel &
       Swiss Institute of Bioinformatics (SIB)

       Klingelbergstr 50-70
       CH - 4056 Basel, Switzerland
       Email: Torsten.Schwede@isb-sib.ch
       Web:   http://www.biozentrum.unibas.ch/schwede/

(1,3)  Dr. Nicolas Guex        ng45767@gsk.com
    
       GlaxoSmithKline R&D S.A.  
       Raleigh, USA

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News from SWISS-MODEL:

  - DeepView - SwissPDB-Viewer 
  - ExPDB template database
  
 Good luck with your projects.

The SWISS-MODEL Team 

        Dr. Torsten Schwede     Torsten.Schwede@isb-sib.ch
        Dr. Nicolas Guex        
        Dr. Manuel C. Peitsch

                                                              February 2003 
_____________________________________________________________________________

DeepView - SwissPDB-Viewer 
===========================

DeepView - SwissPDB-Viewer is available for PC, Macintosh, Linux and SGI, 
and can be downloaded from our site at

                   http://www.expasy.org/spdbv/
		   
The current version of Swiss PDB-viewer includes several new features, e.g.

- Direct Server support: Allows to import PDB or ExPDB files, SwissProt 
  entries etc. into Swiss-Pdb Viewer directly from the network.
- Scripting language
- OpenGL support for Mac
- Sequence pattern searching (e.g. PROSITE)
- and many more ....

Have fun,

Nicolas & Torsten

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ExPDB template database
=======================

The structure database used by SWISS-MODEL is derived from the Protein Data 
Bank (PDB). In order to allow rapid retrieval of the structral information, 
each protein chain of the database was placed in an individual file.

The ExPDB codes are constructed according to the following rule:

PDBCODE+ChainID

Examples : 

  LIGHT HARVESTING PROTEIN : 1cpc 
     two chains (with IDs A & B) in the following entries

     Chain A: 1cpcA
     Chain B: 1cpcB

  MALTOPORIN : 1mal 
     one chain (without chain ID), the corresponding ExPDB-entry is

     1mal_

Please use this syntax to specify a set of template structures to be used 
for a FIRST approach modelling attempt.

Torsten
_____________________________________________________________________________

        Welcome to the SWISS-MODEL Protein Modelling Server    

============================================================================
	

       Your modeling request could not be carried out.

       Please look at the TraceLog file issued by the server.
       The degree of similarity of your sequence with proteins of 
       known 3D structure may be to low.

	At present, SWISS-MODEL will generate models for sequences
	which respond to these criteria:

	BLAST search P value : < 0.00001
	Global degree of sequence identity (SIM) : > 25 %
	Minimal projected model length = 25 aa.

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Length of target sequence: 200 residues

Searching sequences of known 3D structures

No suitable target found ==> Exit
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