FFAS03 result: mendoza1 vs. scop165
Current login: mendoza1		 @  The Burnham Institute
Godzik Lab

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gi|42525023|ref|NP_970403.1| conserved hypothetical protein [Bdellovibrio bacteriovorus] (02/16/04)
Links: ncbi  psi     Result vs. COG0204 JCSG0204 PfamA110 pdb0204 
FFAS03 scores below -9.5 usually mean significant similarity (less than 3% of false positives)
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Score Links Result vs. Template %idFirst MLKNTSSNLDAPVARSCDFAMKKMDLRKAFTLIEPGPVTLVTTSAGGTNNVMTISWTMAVDFTPKLAITTGPWNFSYKALTKSRECVIAIPTVDLLDKVVGVGTCSGKDTDKFDTFRLTPIKGKYVEAPLIKECVANIECKVVDIIKKHDIVVLEGVAAYFDTSRKEKRTLHAVGDGTFVVDGRTLDRKKQMRSKLLGIFLast
-68.400 ali ncbi mod psi COG0204 JCSG0204 PfamA110 pdb0204 scop165  d1ejea_ b.45.1.2 (A:) FMN-binding protein MTH152 {Archaeon Methanobacterium thermoautotrophicum} 19  5.............AHMMSMDFEDFPVESAHRILTPRPTVMVTTDEEGNINAAPFSFTMPVSIDPPVAFASAPDHHTARNIESTHEFVINITPADIIERMWVTARDIPAGENELEAAGLAWTSSRRVKPPRIVEAPGHLECELLRMFEVGDHNLITGSVVSASVRSESVKPVLHVGGNKFVVGDHVRHVE........... 192
-60.800 ali ncbi mod psi COG0204 JCSG0204 PfamA110 pdb0204 scop165  d1i0ra_ b.45.1.2 (A:) Ferric reductase {Archaeon Archaeoglobus fulgidus} 17  2.........................DVEAFYKI-SYGLYIVTSESNGRKCGQIANTVFQLTSKPVIAVCLNKENDTHNAVKESGAFGVSVLELETPMFIGRFGFRKSSEFEKFDGVEYK---TGKTGVPLVTQAVAVIEAKVVKECDVGTHTLFVGEAVDAEVLKDAEVLTYADYHLM...................... 153
-9.050 ali ncbi mod psi COG0204 JCSG0204 PfamA110 pdb0204 scop165  d1flma_ b.45.1.1 (A:) FMN-binding protein {Desulfovibrio vulgaris, strain Miyazaki F} 8  4..........................GTFFEVLKNEGVVAIATQGEDGPHLVNTNSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAGRNGPGTGFLIRGSAAFRTDGPEFEAIARFKWAR-----AALVITVVSAEQT.................................................... 121
-6.790 ali ncbi mod psi COG0204 JCSG0204 PfamA110 pdb0204 scop165  d1dnla_ b.45.1.1 (A:) Pyridoxine 5`-phoshate oxidase (PNP oxidase) {Escherichia coli} 10  2.......GLRRRDLPADPLTLFERWLSQACEAKLPTAMVVATVDEHGQPYQRIVLLKHY--DEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGA........................................................................ 122
-6.260 ali ncbi mod psi COG0204 JCSG0204 PfamA110 pdb0204 scop165  d1fsz_2 d.79.2.1 (232-356) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii} 9  2......................NVDFADVKAVMNNGGLAMIGIGESDSEKRAKEAVSMALN-SPLLDVDIDGATGALIHVMGPEDLTLE----EAREVVATVSSRLDPNATIIWGATIDENLENTVRVLLVI.................................................................... 106
-5.600 ali ncbi mod psi COG0204 JCSG0204 PfamA110 pdb0204 scop165  d1zxq_1 b.1.1.3 (87-192) Second domain of intercellular cell adhesion molecule-2 (ICAM-2) {Human ( 15  1...............................................................PPRQVILTLQPTLVA-VGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTDGHRNFSCLAVLDLMSRGGNI----------------------------------FHKHSAPKMLEIY 106
-5.360 ali ncbi mod psi COG0204 JCSG0204 PfamA110 pdb0204 scop165  d1ot5a2 c.41.1.1 (A:123-460) Kexin, N-terminal domain {Baker`s yeast (Saccharomyces cerevisiae)} 8  172.........................VKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHKDLHPPYSEGC--------SAVMAVTYSSGSGEYIHSSDINGRCSNSHGGTSAAAPLAAGVYTLL.............................................................. 276
-5.340 ali ncbi mod psi COG0204 JCSG0204 PfamA110 pdb0204 scop165  d1hh1a_ c.52.1.18 (A:) Archaeal Holliday junction resolvase Hjc {Archaeon Sulfolobus solfataricus} 14  5..........................RNIVSRLRDKGFAVVRAPASGSKRKDPIPDIIALKNGVIILIEMKSRKDIEGKIYVRREQAEGIIEFARKSGGSLFLGVKKPGVLKFEKLRRTETGNYVADSEILEDLVRLVEAKISRTLD..................................................... 132
-5.100 ali ncbi mod psi COG0204 JCSG0204 PfamA110 pdb0204 scop165  d1gt91_ c.41.1.2 (1:) Serine-carboxyl proteinase PSCP {Bacillus novosp., mn-32, kumamolysin} 14  121..KPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDF-PVLACGGTRLVASAGRIERETVWN-SWQERANVPPSANPGAGSGRGVPDVAGNATTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLPPEVFHDITEGNNDIANRARIYQAGPGIGIRLLQALLP...... 357
-5.010 ali ncbi mod psi COG0204 JCSG0204 PfamA110 pdb0204 scop165  d1lucb_ c.1.16.1 (B:) Bacterial luciferase beta chain, LuxB {Vibrio harveyi} 8  52.................................VGAPLTVAGFLLGMTKNAKVASLNHVITTHHPVRVA--EEACLLDQM-SEGRFAFGFSDCEKSADMRFFNRPTDSQFQLFSEC.................................................................................... 131


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