FSSP FAMILIES OF STRUCTURALLY SIMILAR PROTEINS, VERSION 1.0 (Apr 1 1995)
CREATED Mon Apr 21 10:46:43 BST 2003 for dali on sputnik2-node64.ebi.ac.uk
METHOD Dali ver. 2.0: Holm, L., Sander, C. (1993) J.Mol.Biol. 233,123-138
DATABASE 1 protein chains
PDBID 1924
HEADER HYDROLASE (ACTING ON ACID ANHYDRIDES) 24-MAR-95 1HPM 1HPM 2
COMPND 2 PROTEIN (E.C.3.6.1.3) 1HPM 4
SOURCE 2 (ESCHERICHIA COLI) 1HPM 6
AUTHOR S.M.WILBANKS,D.B.MCKAY 1HPM 8
SEQLENGTH 378
NALIGN 2
WARNING pairs with Z<2.0 are structurally dissimilar
## SUMMARY: PDB/chain identifiers and structural alignment statistics
NR. STRID1 STRID2 Z RMSD LALI LSEQ2 %IDE REVERS PERMUT NFRAG TOPO PROTEIN
1: 1924 1924 67.5 0.0 378 378 100 0 0 1 S 2 PROTEIN (E.C.3.6.1.3)
2: 1924 mol2-T 19.5 3.0 261 375 15 0 0 20 S 4 ENGINEERED: YES
## ALIGNMENTS 1 - 2
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC OCC . .
1 4 G 0 0 0 1 G .
2 5 P - 0 0 0 2 P Fe
3 6 A - 0 0 0 2 A Ye
4 7 V E -Ab 17 139A 0 2 Ve Te
5 8 G E -Ab 16 140A 0 2 Ge Se
6 9 I E -Ab 15 141A 0 2 Ie Ie
7 10 D E -A 14 0A 0 2 De De
8 11 L - 0 0 0 2 L Ie
9 12 G - 0 0 0 2 G G
10 13 T S S+ 0 0 0 2 Ts Ss
11 14 T S S+ 0 0 0 2 Ts Rs
12 15 Y E -E 36 0B 0 2 Ye Ye
13 16 S E -E 35 0B 0 2 Se Ie
14 17 C E -A 7 0A 0 2 Ce Ke
15 18 V E +A 6 0A 0 2 Ve Ge
16 19 G E -AC 5 25A 0 2 Ge Le
17 20 V E -AC 4 24A 0 2 Ve Ve
18 21 F E + C 0 23A 0 2 Fe Le
19 22 Q E > - C 0 22A 0 2 Qe Ge
20 23 H T 3 S- 0 0 0 2 Ht Ke
21 24 G T 3 S+ 0 0 0 2 Gt W
22 25 K E < -C 19 0A 0 2 Ke Ee
23 26 V E -C 18 0A 0 2 Ve Ae
24 27 E E -C 17 0A 0 2 Ee Le
25 28 I E -C 16 0A 0 2 Ie Ae
26 29 I - 0 0 0 2 I Fe
27 30 A - 0 0 0 2 A Se
28 31 N > - 0 0 0 1 N .
29 32 D T 3 S+ 0 0 0 1 Dt .
30 33 Q T 3 S- 0 0 0 1 Qt .
31 34 G S < S+ 0 0 0 1 Gs .
32 35 N - 0 0 0 1 N .
33 36 R S S+ 0 0 0 1 Rs .
34 37 T S S- 0 0 0 2 Ts Se
35 38 T E -E 13 0B 0 2 Te Ve
36 39 P E -E 12 0B 0 2 Pe Ke
37 40 S + 0 0 0 2 S S
38 41 Y - 0 0 0 2 Y R
39 42 V E -FG 48 64C 0 1 Ve .
40 43 A E -FG 47 63C 0 1 Ae .
41 44 F E +F 46 0C 0 1 Fe .
42 45 T - 0 0 0 1 T .
43 46 D S S+ 0 0 0 1 Ds .
44 47 T S S+ 0 0 0 1 Ts .
45 48 E - 0 0 0 1 E .
46 49 R E -F 41 0C 0 1 Re .
47 50 L E -F 40 0C 0 1 Le .
48 51 I E > -F 39 0C 0 1 Ie .
49 52 G T >> S+ 0 0 0 1 Gt .
50 53 D H 3> S+ 0 0 0 1 Dh .
51 54 A H <4 S+ 0 0 0 1 Ah .
52 55 A H X4 S+ 0 0 0 1 Ah .
53 56 K H >< S+ 0 0 0 1 Kh .
54 57 N T 3< S+ 0 0 0 1 Nt .
55 58 Q T X> S+ 0 0 0 1 Qt .
56 59 V T <4 S+ 0 0 0 1 Vt .
57 60 A T 34 S+ 0 0 0 1 At .
58 61 M T <4 S+ 0 0 0 1 Mt .
59 62 N >< + 0 0 0 1 N .
60 63 P G > S+ 0 0 0 1 Pg .
61 64 T G 3 S+ 0 0 0 1 Tg .
62 65 N G < S+ 0 0 0 1 Ng .
63 66 T E < -G 40 0C 0 1 Te .
64 67 V E +G 39 0C 0 1 Ve .
65 68 F + 0 0 0 2 F Gs
66 69 D > + 0 0 0 2 D Lb
67 70 A G >> + 0 0 0 2 Ag Ds
68 71 K G 34 S+ 0 0 0 2 Kg Es
69 72 R G <4 S+ 0 0 0 2 Rg Gs
70 73 L T X4 S+ 0 0 0 2 Lt Es
71 74 I T 3< S+ 0 0 0 2 It Ib
72 75 G T 3 S+ 0 0 0 1 Gt .
73 76 R < - 0 0 0 1 R .
74 77 R > - 0 0 0 1 R .
75 78 F T 3 S+ 0 0 0 1 Ft .
76 79 D T 3 S+ 0 0 0 1 Dt .
77 80 D <> - 0 0 0 1 D .
78 81 A H > S+ 0 0 0 1 Ah .
79 82 V H > S+ 0 0 0 1 Vh .
80 83 V H > S+ 0 0 0 1 Vh .
81 84 Q H X S+ 0 0 0 1 Qh .
82 85 S H >< S+ 0 0 0 1 Sh .
83 86 D H >X S+ 0 0 0 1 Dh .
84 87 M H >< S+ 0 0 0 1 Mh .
85 88 K T << S+ 0 0 0 1 Kt .
86 89 H T <4 S+ 0 0 0 1 Ht .
87 90 W << - 0 0 0 1 W .
88 91 P S S+ 0 0 0 1 Ps .
89 92 F S S- 0 0 0 1 Fs .
90 93 M E -H 101 0D 0 1 Me .
91 94 V E -H 100 0D 0 1 Ve .
92 95 V E -H 99 0D 0 1 Ve .
93 96 N E +H 98 0D 0 1 Ne .
94 97 D E > S-H 97 0D 0 1 De .
95 98 A T 3 S- 0 0 0 1 At .
96 99 G T 3 S+ 0 0 0 1 Gt .
97 100 R E < -H 94 0D 0 1 Re .
98 101 P E +H 93 0D 0 1 Pe .
99 102 K E -H 92 0D 0 1 Ke .
100 103 V E -HI 91 111D 0 1 Ve .
101 104 Q E +HI 90 110D 0 1 Qe .
102 105 V E - I 0 109D 0 1 Ve .
103 106 E E + I 0 108D 0 1 Ee .
104 107 Y E > - I 0 107D 0 1 Ye .
105 108 K T 3 S- 0 0 0 1 Kt .
106 109 G T 3 S+ 0 0 0 1 Gt .
107 110 E E < S-I 104 0D 0 1 Ee .
108 111 T E +I 103 0D 0 1 Te .
109 112 K E -I 102 0D 0 1 Ke .
110 113 S E -I 101 0D 0 1 Se .
111 114 F E -I 100 0D 0 1 Fe .
112 115 Y >> - 0 0 0 2 Y Ks
113 116 P H 3> S+ 0 0 0 2 Ph D
114 117 E H 3> S+ 0 0 0 2 Eh Ah
115 118 E H <> S+ 0 0 0 2 Eh Ih
116 119 V H X S+ 0 0 0 2 Vh Ah
117 120 S H X S+ 0 0 0 2 Sh Fh
118 121 S H X S+ 0 0 0 2 Sh Kh
119 122 M H X S+ 0 0 0 2 Mh Eh
120 123 V H X S+ 0 0 0 2 Vh Sh
121 124 L H X S+ 0 0 0 2 Lh Vh
122 125 T H X S+ 0 0 0 2 Th Nh
123 126 K H X S+ 0 0 0 2 Kh Th
124 127 M H X S+ 0 0 0 2 Mh Lh
125 128 K H X S+ 0 0 0 2 Kh Lh
126 129 E H X S+ 0 0 0 2 Eh Kh
127 130 I H X S+ 0 0 0 2 Ih Eh
128 131 A H X S+ 0 0 0 2 Ah Lh
129 132 E H X>S+ 0 0 0 2 Eh Eh
130 133 A H <5S+ 0 0 0 2 Ah Eh
131 134 Y H <5S+ 0 0 0 2 Yh Qh
132 135 L H <5S- 0 0 0 2 Lh Lh
133 136 G T <5S+ 0 0 0 2 Gt Qt
134 137 K S <S- 0 0 0 2 Ks Ks
135 138 T - 0 0 0 2 T S
136 139 V + 0 0 0 2 V L
137 140 T + 0 0 0 2 T R
138 141 N E + d 0 165A 0 2 Ne D
139 142 A E -bd 4 166A 0 2 Ae Fe
140 143 V E -bd 5 168A 0 2 Ve Ve
141 144 V E -bd 6 169A 0 2 Ve Ie
142 145 T E - d 0 170A 0 2 Te Se
143 146 V E - d 0 171A 0 2 Ve Fe
144 147 P > - 0 0 0 2 P S
145 148 A T 3 S+ 0 0 0 2 At S
146 149 Y T 3 S+ 0 0 0 2 Yt Vt
147 150 F < - 0 0 0 2 F Ve
148 151 N > - 0 0 0 2 N Pe
149 152 D H > S+ 0 0 0 2 Dh Lh
150 153 S H > S+ 0 0 0 2 Sh Kh
151 154 Q H > S+ 0 0 0 2 Qh Vh
152 155 R H X S+ 0 0 0 2 Rh Yh
153 156 Q H X S+ 0 0 0 2 Qh E
154 157 A H X S+ 0 0 0 1 Ah .
155 158 T H X S+ 0 0 0 2 Th F
156 159 K H X S+ 0 0 0 2 Kh Yh
157 160 D H X S+ 0 0 0 2 Dh Nh
158 161 A H X S+ 0 0 0 2 Ah Fh
159 162 G H <>S+ 0 0 0 2 Gh Lh
160 163 T H ><5S+ 0 0 0 2 Th Qh
161 164 I H 3<5S+ 0 0 0 2 Ih Dt
162 165 A T 3<5S- 0 0 0 2 At Tt
163 166 G T < 5S+ 0 0 0 2 Gt Vs
164 167 L < - 0 0 0 2 L Ks
165 168 N E -d 138 0A 0 2 Ne Ss
166 169 V E -d 139 0A 0 2 Ve P
167 170 L E - 0 0 0 2 Le Fe
168 171 R E -d 140 0A 0 2 Re Qe
169 172 I E +d 141 0A 0 2 Ie Le
170 173 I E -d 142 0A 0 2 Ie Ke
171 174 N E > -d 143 0A 0 2 Ne Se
172 175 E H > S+ 0 0 0 2 Eh Sh
173 176 P H > S+ 0 0 0 2 Ph Lh
174 177 T H > S+ 0 0 0 2 Th Vh
175 178 A H X S+ 0 0 0 2 Ah Sh
176 179 A H X S+ 0 0 0 2 Ah Th
177 180 A H ><>S+ 0 0 0 2 Ah Ah
178 181 I H ><5S+ 0 0 0 2 Ih Eh
179 182 A H 3<5S+ 0 0 0 2 Ah Gh
180 183 Y T <<5S- 0 0 0 2 Yt Vh
181 184 G T X 5S+ 0 0 0 1 Gt .
182 185 L T 3 < + 0 0 0 2 Lt L
183 186 D T 3 S+ 0 0 0 2 Dt T
184 187 K S < S- 0 0 0 2 Ks Th
185 188 K + 0 0 0 2 K Ph
186 189 V - 0 0 0 1 V .
187 190 G S S+ 0 0 0 1 Gs .
188 191 A S S- 0 0 0 1 As .
189 192 E - 0 0 0 2 E Dh
190 193 R E -J 209 0E 0 2 Re Rh
191 194 N E -J 208 0E 0 2 Ne G
192 195 V E -Jk 207 330E 0 2 Ve Ve
193 196 L E -Jk 206 331E 0 2 Le Ve
194 197 I E -Jk 205 332E 0 2 Ie Ve
195 198 F E -Jk 204 333E 0 2 Fe Ve
196 199 D E +Jk 203 334E 0 2 De Ne
197 200 L E +J 202 0E 0 2 Le L
198 201 G - 0 0 0 2 G G
199 202 G S S+ 0 0 0 2 Gs Ys
200 203 G S S+ 0 0 0 2 Gs Ns
201 204 T - 0 0 0 2 T Fs
202 205 F E +JL 197 222E 0 2 Fe Te
203 206 D E -JL 196 221E 0 2 De Ge
204 207 V E +JL 195 220E 0 2 Ve Le
205 208 S E -JL 194 219E 0 2 Se Ie
206 209 I E -JL 193 218E 0 2 Ie Ae
207 210 L E -JL 192 216E 0 2 Le Ye
208 211 T E -JL 191 215E 0 2 Te Ke
209 212 I E +JL 190 214E 0 2 Ie Nt
210 213 E E > S- L 0 213E 0 2 Ee Gt
211 214 D T 3 S- 0 0 0 1 Dt .
212 215 G T 3 S+ 0 0 0 1 Gt .
213 216 I E < -L 210 0E 0 1 Ie .
214 217 F E -L 209 0E 0 1 Fe .
215 218 E E -L 208 0E 0 2 Ee Ve
216 219 V E -L 207 0E 0 2 Ve Pe
217 220 K E - 0 0 0 2 Ke Ie
218 221 S E -L 206 0E 0 2 Se Ke
219 222 T E +L 205 0E 0 2 Te Ie
220 223 A E +L 204 0E 0 2 Ae Se
221 224 G E -L 203 0E 0 2 Ge Ye
222 225 D E > -L 202 0E 0 2 De Ve
223 226 T T 3 S+ 0 0 0 1 Tt .
224 227 H T 3 S+ 0 0 0 2 Ht Ps
225 228 L < + 0 0 0 2 L V
226 229 G S >> S- 0 0 0 2 Gs G
227 230 G H 3> S+ 0 0 0 2 Gh K
228 231 E H 3> S+ 0 0 0 1 Eh .
229 232 D H <> S+ 0 0 0 2 Dh Hh
230 233 F H X S+ 0 0 0 2 Fh Vh
231 234 D H X S+ 0 0 0 2 Dh Ih
232 235 N H X S+ 0 0 0 2 Nh Kh
233 236 R H X S+ 0 0 0 2 Rh Dh
234 237 M H X S+ 0 0 0 2 Mh Vh
235 238 V H X S+ 0 0 0 2 Vh Sh
236 239 N H X S+ 0 0 0 2 Nh Ah
237 240 H H X S+ 0 0 0 2 Hh Vh
238 241 F H X S+ 0 0 0 2 Fh Ls
239 242 I H X S+ 0 0 0 2 Ih Ds
240 243 A H X S+ 0 0 0 1 Ah .
241 244 E H X S+ 0 0 0 1 Eh .
242 245 F H X S+ 0 0 0 1 Fh .
243 246 K H X S+ 0 0 0 1 Kh .
244 247 R H < S+ 0 0 0 1 Rh .
245 248 K H < S+ 0 0 0 1 Kh .
246 249 H H < S- 0 0 0 1 Hh .
247 250 K S < S+ 0 0 0 1 Ks .
248 251 K - 0 0 0 1 K .
249 252 D - 0 0 0 1 D .
250 253 I > + 0 0 0 1 I .
251 254 S T 3 S+ 0 0 0 1 St .
252 255 E T 3 S+ 0 0 0 1 Et .
253 256 N <> - 0 0 0 1 N .
254 257 K H > S+ 0 0 0 1 Kh .
255 258 R H > S+ 0 0 0 1 Rh .
256 259 A H > S+ 0 0 0 1 Ah .
257 260 V H X S+ 0 0 0 1 Vh .
258 261 R H X S+ 0 0 0 1 Rh .
259 262 R H X S+ 0 0 0 1 Rh .
260 263 L H X S+ 0 0 0 2 Lh S
261 264 R H X S+ 0 0 0 2 Rh Fh
262 265 T H X S+ 0 0 0 2 Th Eh
263 266 A H X S+ 0 0 0 2 Ah Eh
264 267 C H X S+ 0 0 0 2 Ch Sh
265 268 E H X S+ 0 0 0 2 Eh Eh
266 269 R H X S+ 0 0 0 2 Rh Rh
267 270 A H X S+ 0 0 0 2 Ah Lh
268 271 K H < S+ 0 0 0 2 Kh Ih
269 272 R H >< S+ 0 0 0 2 Rh Ih
270 273 T H >X S+ 0 0 0 2 Th Th
271 274 L T 3< S+ 0 0 0 2 Lt Hh
272 275 S T <4 S+ 0 0 0 2 St G
273 276 S T <4 S+ 0 0 0 1 St .
274 277 S S < S- 0 0 0 1 Ss .
275 278 T S S+ 0 0 0 1 Ts .
276 279 Q E -N 295 0F 0 2 Qe Ee
277 280 A E -N 294 0F 0 2 Ae Ie
278 281 S E -N 293 0F 0 2 Se Qe
279 282 I E +N 292 0F 0 2 Ie Ye
280 283 E E +N 291 0F 0 2 Ee Re
281 284 I E -N 290 0F 0 2 Ie G
282 285 D E S- 0 0 0 2 De Lt
283 286 S E S+ 0 0 0 2 Se Dt
284 287 L E - 0 0 0 2 Le Gs
285 288 Y E > S-N 288 0F 0 1 Ye .
286 289 E T 3 S- 0 0 0 1 Et .
287 290 G T 3 S+ 0 0 0 1 Gt .
288 291 I E < -N 285 0F 0 1 Ie .
289 292 D E - 0 0 0 2 De Ns
290 293 F E +N 281 0F 0 2 Fe T
291 294 Y E +N 280 0F 0 2 Ye Ie
292 295 T E -N 279 0F 0 2 Te Ke
293 296 S E -N 278 0F 0 2 Se Te
294 297 I E -N 277 0F 0 2 Ie Te
295 298 T E > -N 276 0F 0 2 Te Te
296 299 R H > S+ 0 0 0 2 Rh Ah
297 300 A H > S+ 0 0 0 2 Ah Kh
298 301 R H > S+ 0 0 0 2 Rh Kh
299 302 F H X S+ 0 0 0 2 Fh Lh
300 303 E H >X S+ 0 0 0 2 Eh Sh
301 304 E H >< S+ 0 0 0 2 Eh Vh
302 305 L H 3< S+ 0 0 0 2 Lh Ih
303 306 N H <X S+ 0 0 0 2 Nh Ih
304 307 A H <X S+ 0 0 0 2 Ah Hh
305 308 D H > S+ 0 0 0 2 Dh Ah
306 309 L H > S+ 0 0 0 2 Lh Rh
307 310 F H >< S+ 0 0 0 2 Fh Lh
308 311 R H >< S+ 0 0 0 2 Rh Rh
309 312 G H >< S+ 0 0 0 2 Gh Eh
310 313 T T <X S+ 0 0 0 2 Tt I
311 314 L H <> S+ 0 0 0 2 Lh S
312 315 D H <> S+ 0 0 0 2 Dh Kt
313 316 P H > S+ 0 0 0 2 Ph St
314 317 V H X S+ 0 0 0 1 Vh .
315 318 E H X S+ 0 0 0 2 Eh Kh
316 319 K H X S+ 0 0 0 2 Kh Kh
317 320 A H X S+ 0 0 0 2 Ah Fh
318 321 L H X>S+ 0 0 0 2 Lh Fh
319 322 R H ><5S+ 0 0 0 2 Rh Rh
320 323 D H 3<5S+ 0 0 0 2 Dh Eh
321 324 A H 3<5S- 0 0 0 2 Ah Vh
322 325 K T <<5 + 0 0 0 2 Kt Eh
323 326 L < - 0 0 0 2 L At
324 327 D > - 0 0 0 2 D K
325 328 K G > S+ 0 0 0 1 Kg .
326 329 S G 3 S+ 0 0 0 1 Sg .
327 330 Q G < S+ 0 0 0 2 Qg G
328 331 I < - 0 0 0 2 I I
329 332 H + 0 0 0 2 H Ps
330 333 D E -k 192 0E 0 2 De Gs
331 334 I E -k 193 0E 0 2 Ie Ve
332 335 V E -km 194 357E 0 2 Ve Ve
333 336 L E +k 195 0E 0 2 Le Le
334 337 V E +k 196 0E 0 2 Ve Te
335 338 G S > S- 0 0 0 2 Gs Gs
336 339 G G > S+ 0 0 0 2 Gg Gg
337 340 S G > S+ 0 0 0 2 Sg Gg
338 341 T G < S+ 0 0 0 2 Tg Ag
339 342 R G < + 0 0 0 2 Rg Kg
340 343 I X> - 0 0 0 2 I Is
341 344 P H 3> S+ 0 0 0 2 Ph Pt
342 345 K H 3> S+ 0 0 0 2 Kh Rt
343 346 I H <> S+ 0 0 0 2 Ih Ih
344 347 Q H X S+ 0 0 0 2 Qh Nh
345 348 K H X S+ 0 0 0 2 Kh Eh
346 349 L H X S+ 0 0 0 2 Lh Lh
347 350 L H X S+ 0 0 0 2 Lh Ah
348 351 Q H <>S+ 0 0 0 2 Qh Th
349 352 D H ><5S+ 0 0 0 2 Dh Eh
350 353 F H 3<5S+ 0 0 0 2 Fh Vh
351 354 F T ><5S- 0 0 0 2 Ft Fh
352 355 N T < 5S- 0 0 0 2 Nt K
353 356 G T 3 <S+ 0 0 0 2 Gt Ss
354 357 K < - 0 0 0 2 K P
355 358 E - 0 0 0 2 E Ve
356 359 L - 0 0 0 2 L Re
357 360 N B +m 332 0E 0 2 Nb Te
358 361 K + 0 0 0 2 K G
359 362 S S S+ 0 0 0 2 Ss C
360 363 I S S- 0 0 0 2 Is Nt
361 364 N >> - 0 0 0 2 N D
362 365 P T 34 S+ 0 0 0 2 Pt Pg
363 366 D T 34 S+ 0 0 0 2 Dt Sg
364 367 E T <> S+ 0 0 0 2 Et Fg
365 368 A H X S+ 0 0 0 2 Ah Ah
366 369 V H > S+ 0 0 0 2 Vh Ah
367 370 A H > S+ 0 0 0 2 Ah Ah
368 371 Y H X S+ 0 0 0 2 Yh Fh
369 372 G H X S+ 0 0 0 2 Gh Gh
370 373 A H X S+ 0 0 0 2 Ah Nh
371 374 A H X S+ 0 0 0 2 Ah Vh
372 375 V H X S+ 0 0 0 2 Vh Fh
373 376 Q H X S+ 0 0 0 2 Qh At
374 377 A H X S+ 0 0 0 2 Ah Vt
375 378 A H < S+ 0 0 0 2 Ah S
376 379 I H < S+ 0 0 0 1 Ih .
377 380 L H < 0 0 0 1 Lh .
378 381 S < 0 0 0 1 S .
## EQUIVALENCES: ranges of aligned residues
NR. STRID1 STRID2 STRID1 <=> STRID2 STRID1 <=> STRID2
1: 1924 1924 1 - 378 <=> 1 - 378 (GLY 4 - SER 381 <=> GLY 4 - SER 381)
2: 1924 mol2-T 2 - 20 <=> 4 - 22 (PRO 5 - HIS 23 <=> PHE T 9 - LYS T 27)
2: 1924 mol2-T 21 - 27 <=> 27 - 33 (GLY 24 - ALA 30 <=> TRP T 32 - SER T 38)
2: 1924 mol2-T 34 - 38 <=> 34 - 38 (THR 37 - TYR 41 <=> SER T 39 - ARG T 43)
2: 1924 mol2-T 65 - 71 <=> 39 - 45 (PHE 68 - ILE 74 <=> GLY T 44 - ILE T 50)
2: 1924 mol2-T 112 - 137 <=> 46 - 71 (TYR 115 - THR 140 <=> LYS T 51 - ARG T 76)
2: 1924 mol2-T 138 - 146 <=> 73 - 81 (ASN 141 - TYR 149 <=> ASP T 78 - VAL T 86)
2: 1924 mol2-T 147 - 153 <=> 158 - 164 (PHE 150 - GLN 156 <=> VAL T 165 - GLU T 171)
2: 1924 mol2-T 155 - 180 <=> 165 - 190 (THR 158 - TYR 183 <=> PHE T 173 - VAL T 198)
2: 1924 mol2-T 182 - 185 <=> 191 - 194 (LEU 185 - LYS 188 <=> LEU T 199 - PRO T 202)
2: 1924 mol2-T 189 - 210 <=> 197 - 218 (GLU 192 - GLU 213 <=> ASP T 205 - GLY T 226)
2: 1924 mol2-T 215 - 222 <=> 219 - 226 (GLU 218 - ASP 225 <=> VAL T 227 - VAL T 234)
2: 1924 mol2-T 224 - 227 <=> 227 - 230 (HIS 227 - GLY 230 <=> PRO T 235 - LYS T 239)
2: 1924 mol2-T 229 - 239 <=> 231 - 241 (ASP 232 - ILE 242 <=> HIS T 240 - ASP T 250)
2: 1924 mol2-T 260 - 272 <=> 243 - 255 (LEU 263 - SER 275 <=> SER T 252 - GLY T 264)
2: 1924 mol2-T 276 - 284 <=> 266 - 274 (GLN 279 - LEU 287 <=> GLU T 275 - GLY T 283)
2: 1924 mol2-T 289 - 313 <=> 275 - 299 (ASP 292 - PRO 316 <=> ASN T 284 - SER T 309)
2: 1924 mol2-T 315 - 324 <=> 300 - 309 (GLU 318 - ASP 327 <=> LYS T 310 - LYS T 319)
2: 1924 mol2-T 327 - 330 <=> 310 - 313 (GLN 330 - ASP 333 <=> GLY T 327 - GLY T 330)
2: 1924 mol2-T 331 - 359 <=> 315 - 343 (ILE 334 - SER 362 <=> VAL T 332 - CYS T 360)
2: 1924 mol2-T 360 - 375 <=> 360 - 375 (ILE 363 - ALA 378 <=> ASN T 377 - SER T 392)
## MATRICES: UX+T is the least-squares superimposition of STRID2 (X) onto STRID1
NR. STRID1 STRID2 U(.,1) U(.,2) U(.,3) T(.)
1: 1924 1924 U(1,.) 1.000000 0.000000 0.000000 0.000000
1: 1924 1924 U(2,.) 0.000000 1.000000 0.000000 0.000000
1: 1924 1924 U(3,.) 0.000000 0.000000 1.000000 0.000000
2: 1924 mol2-T U(1,.) 0.827668 0.114710 0.549370 -31.461958
2: 1924 mol2-T U(2,.) -0.514832 0.544870 0.661865 1.270171
2: 1924 mol2-T U(3,.) -0.223413 -0.830638 0.510028 7.714231
## FOOTER
References: L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
Parameters elastic similarity score, threshold 0.20; sequential alignment
The following notation is used for data columns:
STRID1/STRID2 PDB identifiers of search structure and aligned structure with
chain identifier
Z Z-score, i.e., strength of structural similarity in standard
deviations above expexted. The matched structures are sorted
by Z-score. Only matches above a threshold of Z=2 are reported.
RMSD positional root mean square deviation of superimposed CA atoms
in Angstroms
LALI total number of equivalenced residues
LSEQ2 length of the entire chain of the equivalenced structure
%IDE percentage of sequence identity over equivalenced positions
REVERS number of fragments matching in reversed chain direction
PERMUT number of topological permutations (loop reconnections between
query and matched structure)
NFRAG total number of equivalenced fragments
TOPO 'S' sequential connectivity of equivalenced fragments
'N' non-sequential alignment
PROTEIN COMPND record from the PDB file of the aligned structure
SeqNo, PDBNo, AA, STRUCTURE, BP1, BP2, ACC
sequential and PDB residue numbers, amino acid (lower case =
Cys),secondary structure, solvent exposure as in DSSP (Kabsch
and Sander, Biopolymers 22, 2577-2637, 1983). The alignments
block shows the amino acid sequence and DSSP code (in lower
case) of the equivalenced fragments.
OCC number of equivalences spanning this position
STRID1 <=> STRID2
sequential residue numbers of equivalenced fragments (PDB
residue numbers in parentheses); any topological permutations
and matches in reverse chain direction are flagged
e-mail Holm@ebi.ac.uk (Internet)
anonymous ftp ftp://ftp.ebi.ac.uk/pub/databases/fssp
WWW URL http://www.ebi.ac.uk/dali/fssp/
Availability: Under the terms of the GNU Library General Public License.
//