$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$ $ $ $ Your FUGUE job has finished successfully. $ $ A short summary is shown below and MORE DETAILED RESULT can be examined at $ $ $ $ ------------------------------------------------------------------------- $ $ $ $ $ $ Information about the size of fold library and RECOMMENDED CUTOFF can be $ $ found in the description box below. $ $ $ $ $ $$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$ ############################################################################### # FUGUE v2.s.05 (JUL 2002) # # # # Search sequence(s) against fold library using environment-specific # # substitution tables and structure-dependent gap penalties. # # # # Fold library and substitution tables are based on the HOMSTRAD database. # # # # Citation: # # J. Shi, T. L. Blundell and K. Mizuguchi (2001), J Mol Biol, 310(1), 243-57 # # # # N.B. Please note that Fugue has been updated (since 2nd of May 2002) and # # consequently the recommended z-score cut-offs used are different from # # previous versions. The new recommended cut-offs are shown below. # # # # Size of fold library: 4242 # # Probe sequence ID : target_1 # # Probe sequence len : 91 # # Probe divergence : 0.733 # # Recommended cutoff : ZSCORE >= 6.0 (CERTAIN 99% confidence) # # Other cutoff : ZSCORE >= 4.0 (LIKELY 95% confidence) # # Other cutoff : ZSCORE >= 3.5 (MARGINAL 90% confidence) # # Other cutoff : ZSCORE >= 2.0 (GUESS 50% confidence) # # Other cutoff : ZSCORE < 2.0 (UNCERTAIN) # # # # PLEN : Profile length # # RAWS : Raw alignment score # # RVN : (Raw score)-(Raw score for NULL model) # # ZSCORE : Z-score normalized by sequence divergence # # PVZ : P-value based on Z-score jumbling (Currently Disabled) # # ZORI : Original Z-score (before normalization) # # EVP : E-value based on profile calibration (Currently Disabled) # # EVF : E-value based on library search (Currently Disabled) # # AL : Alignment algorithm used for Zscore/Alignment calculation # # 0 -- Global, 2 -- GloLocSeq (No sequence termini gap penalty) # # 3 -- GloLocPrf (No profile termini gap penalty) # ############################################################################### #-----------------------------------------------------------------------------# # Profile PLEN RAWS RVN ZSCORE PVZ ZORI EVP EVF AL# # ****** # #-----------------------------------------------------------------------------# hsd1ail 70 -6 59 2.60 1.0E+03 4.20 1.0E+03 1.0E+03 00 hs1bxpb 13 -65 8 1.94 1.0E+03 3.25 1.0E+03 1.0E+03 02 hsd1bf2_3 475 -786 45 1.92 1.0E+03 4.69 1.0E+03 1.0E+03 03 hsd1cd1a2 179 -175 21 1.88 1.0E+03 3.48 1.0E+03 1.0E+03 03 hs1n2fa 142 -104 6 1.85 1.0E+03 4.69 1.0E+03 1.0E+03 03 hs1hgva 46 19 17 1.75 1.0E+03 3.07 1.0E+03 1.0E+03 22 Ribosomal_S30AE 125 -48 31 1.67 1.0E+03 4.35 1.0E+03 1.0E+03 00 hs1gbrb 15 -68 15 1.66 1.0E+03 2.98 1.0E+03 1.0E+03 02 hs1hlva 131 -85 51 1.64 1.0E+03 4.51 1.0E+03 1.0E+03 00 hsd1uok_2 479 -791 25 1.63 1.0E+03 4.32 1.0E+03 1.0E+03 03 ### ALIGNMENT: MASTER SEQUENCE vs MOST SIMILAR STRUCTURE IN THE PROFILE (FOR CAFASP EVALUATION) ###
P1;hsd1ail
structureX:hsd1ail
--------MDSNTVSSFQVDCFLWHVRKQVVDQELGDAPFLDRLRRDQKSLRGRGSTLGLN---------
IEAATHVGKQIVEKILK----*
P1;QUERY tr|O26773 Hypothetical protein MTH677 - Methanobacterium thermoautotrophicum.
sequence
MSLRKLTEGDLDEISSFLHNTISDFILKRVSAKEIVDIDITVLVEYTDELKVDISAELYLDELSDADPGI
VDEAVDAAYRSLESFLDGFRE*


###    ALIGNMENT:   MASTER SEQUENCE vs ALL STRUCTURES IN THE PROFILE  ###
SEQ:            target_1
PRF:            hsd1ail
SEQLEN:         91
PRFLEN:         70
PRFSTRNUM:      1
ZSCORE:         2.60

P1;hsd1ail
structureX:hsd1ail
--------MDSNTVSSFQVDCFLWHVRKQVVDQELGDAPFLDRLRRDQKSLRGRGSTLGLN---------
IEAATHVGKQIVEKILK----*
P1;QUERY tr|O26773 Hypothetical protein MTH677 - Methanobacterium thermoautotrophicum.
sequence
MSLRKLTEGDLDEISSFLHNTISDFILKRVSAKEIVDIDITVLVEYTDELKVDISAELYLDELSDADPGI
VDEAVDAAYRSLESFLDGFRE*


###      CASP FORMAT OUTPUT (EXPERIMENTAL ONLY, MAY CONTAINS ERRORS)      ###
###    IF NOT EQUIVELENT TO <<MASTER SEQUENCE vs MOST SIMILAR STRUCTURE   ###
###          IN THE PROFILE>> SECTION, THIS PART WILL BE DISCARDED.       ###

PFRMAT AL
TARGET QUERY tr|O26773 Hypothetical protein MTH677 - Methanobacterium thermoautotrophicum.
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=2.60 
REMARK CONFIDENCE: GUESS     (50% confidence [ ZSCORE>=2.0 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1ail
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  1
PARENT 1ail
G   9     M     1 
D  10     D     2 
L  11     S     3 
D  12     N     4 
E  13     T     5 
I  14     V     6 
S  15     S     7 
S  16     S     8 
F  17     F     9 
L  18     Q    10 
H  19     V    11 
N  20     D    12 
T  21     C    13 
I  22     F    14 
S  23     L    15 
D  24     W    16 
F  25     H    17 
I  26     V    18 
L  27     R    19 
K  28     K    20 
R  29     Q    21 
V  30     V    22 
S  31     V    23 
A  32     D    24 
K  33     Q    25 
E  34     E    26 
I  35     L    27 
V  36     G    28 
D  37     D    29 
I  38     A    30 
D  39     P    31 
I  40     F    32 
T  41     L    33 
V  42     D    34 
L  43     R    35 
V  44     L    36 
E  45     R    37 
Y  46     R    38 
T  47     D    39 
D  48     Q    40 
E  49     K    41 
L  50     S    42 
K  51     L    43 
V  52     R    44 
D  53     G    45 
I  54     R    46 
S  55     G    47 
A  56     S    48 
E  57     T    49 
L  58     L    50 
Y  59     G    51 
L  60     L    52 
D  61     N    53 
V  71     I    54 
D  72     E    55 
E  73     A    56 
A  74     A    57 
V  75     T    58 
D  76     H    59 
A  77     V    60 
A  78     G    61 
Y  79     K    62 
R  80     Q    63 
S  81     I    64 
L  82     V    65 
E  83     E    66 
S  84     K    67 
F  85     I    68 
L  86     L    69 
D  87     K    70 
TER
END


###    ALIGNMENT:   MASTER SEQUENCE vs MOST SIMILAR STRUCTURE IN THE PROFILE (FOR CAFASP EVALUATION)  ###
P1;hs1bxpb
structureX:hs1bxpb
----------------------------------------------------------------------
--------MRYYESSLKSYPD*
P1;QUERY tr|O26773 Hypothetical protein MTH677 - Methanobacterium thermoautotrophicum.
sequence
MSLRKLTEGDLDEISSFLHNTISDFILKRVSAKEIVDIDITVLVEYTDELKVDISAELYLDELSDADPGI
VDEAVDAAYRSLESFLDGFRE*


###    ALIGNMENT:   MASTER SEQUENCE vs ALL STRUCTURES IN THE PROFILE  ###
SEQ:            target_1
PRF:            hs1bxpb
SEQLEN:         91
PRFLEN:         13
PRFSTRNUM:      1
ZSCORE:         1.94

P1;hs1bxpb
structureX:hs1bxpb
----------------------------------------------------------------------
--------MRYYESSLKSYPD*
P1;QUERY tr|O26773 Hypothetical protein MTH677 - Methanobacterium thermoautotrophicum.
sequence
MSLRKLTEGDLDEISSFLHNTISDFILKRVSAKEIVDIDITVLVEYTDELKVDISAELYLDELSDADPGI
VDEAVDAAYRSLESFLDGFRE*


###      CASP FORMAT OUTPUT (EXPERIMENTAL ONLY, MAY CONTAINS ERRORS)      ###
###    IF NOT EQUIVELENT TO <<MASTER SEQUENCE vs MOST SIMILAR STRUCTURE   ###
###          IN THE PROFILE>> SECTION, THIS PART WILL BE DISCARDED.       ###

PFRMAT AL
TARGET QUERY tr|O26773 Hypothetical protein MTH677 - Methanobacterium thermoautotrophicum.
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=1.94 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<2.0 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hs1bxpb
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  2
PARENT 1bxp_B
Y  79     M     1 
R  80     R     2 
S  81     Y     3 
L  82     Y     4 
E  83     E     5 
S  84     S     6 
F  85     S     7 
L  86     L     8 
D  87     K     9 
G  88     S    10 
F  89     Y    11 
R  90     P    12 
E  91     D    13 
TER
END


###    ALIGNMENT:   MASTER SEQUENCE vs MOST SIMILAR STRUCTURE IN THE PROFILE (FOR CAFASP EVALUATION)  ###
P1;hsd1bf2_3
structureX:hsd1bf2_3
PSTQSTGTKPTRAQKDDVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLKASYLASLGVTAVEFLPVQETQN
DANDVVPNSDANQNYWGYMTENYFSPDRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVVYNHTAEGG
TWTSSDPTTATIYSWRGLDNATYYELTSGNQYFYDNTGIGANFNTYNTVAQNLIVDSLAYWANTMGVDGF
RFDLASVLGNSCLNGAYTASAPNCPNGGYNFDAADSNVAINRILREFTVRPAAGGSGLDLFAEPWAIGGN
SYQLGGFPQGWSEWNGLFRDSLRQAQNELGSMTIYVTQDANDFSGSSNLFQSSGRSPWNSINFIDVHDGM
TLKDVYSCNGANNSQAWPYGPSDGGTSTNYSWDQGMSAGTGAAVDQRRAARTGMAFEMLSAGTPLMQGGD
EYLRTLQCNNNAYNLDSSANWLTYSWTTDQSNFYTFAQRLIAFRKAHPALRPSSW*
P1;QUERY tr|O26773 Hypothetical protein MTH677 - Methanobacterium thermoautotrophicum.
sequence
----------------------------------------------------------------------
--------------------------------MSLRKLTEGDLDEISSFLH----NTISDFILKRVSAKE
IVDIDITVLVEYTDELKVDISAELYLDE--------------LSDADPGIVDEAVDAAYRSLESF-LDGF
RE--------------------------------------------------------------------
----------------------------------------------------------------------
----------------------------------------------------------------------
-------------------------------------------------------*


###    ALIGNMENT:   MASTER SEQUENCE vs ALL STRUCTURES IN THE PROFILE  ###
SEQ:            target_1
PRF:            hsd1bf2_3
SEQLEN:         91
PRFLEN:         475
PRFSTRNUM:      1
ZSCORE:         1.92

P1;hsd1bf2_3
structureX:hsd1bf2_3
PSTQSTGTKPTRAQKDDVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLKASYLASLGVTAVEFLPVQETQN
DANDVVPNSDANQNYWGYMTENYFSPDRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVVYNHTAEGG
TWTSSDPTTATIYSWRGLDNATYYELTSGNQYFYDNTGIGANFNTYNTVAQNLIVDSLAYWANTMGVDGF
RFDLASVLGNSCLNGAYTASAPNCPNGGYNFDAADSNVAINRILREFTVRPAAGGSGLDLFAEPWAIGGN
SYQLGGFPQGWSEWNGLFRDSLRQAQNELGSMTIYVTQDANDFSGSSNLFQSSGRSPWNSINFIDVHDGM
TLKDVYSCNGANNSQAWPYGPSDGGTSTNYSWDQGMSAGTGAAVDQRRAARTGMAFEMLSAGTPLMQGGD
EYLRTLQCNNNAYNLDSSANWLTYSWTTDQSNFYTFAQRLIAFRKAHPALRPSSW*
P1;QUERY tr|O26773 Hypothetical protein MTH677 - Methanobacterium thermoautotrophicum.
sequence
----------------------------------------------------------------------
--------------------------------MSLRKLTEGDLDEISSFLH----NTISDFILKRVSAKE
IVDIDITVLVEYTDELKVDISAELYLDE--------------LSDADPGIVDEAVDAAYRSLESF-LDGF
RE--------------------------------------------------------------------
----------------------------------------------------------------------
----------------------------------------------------------------------
-------------------------------------------------------*


###      CASP FORMAT OUTPUT (EXPERIMENTAL ONLY, MAY CONTAINS ERRORS)      ###
###    IF NOT EQUIVELENT TO <<MASTER SEQUENCE vs MOST SIMILAR STRUCTURE   ###
###          IN THE PROFILE>> SECTION, THIS PART WILL BE DISCARDED.       ###

PFRMAT AL
TARGET QUERY tr|O26773 Hypothetical protein MTH677 - Methanobacterium thermoautotrophicum.
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=1.92 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<2.0 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1bf2_3
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  3
PARENT 1bf2
M   1     N   265 
S   2     K   266 
L   3     A   267 
R   4     A   268 
K   5     G   269 
L   6     G   270 
T   7     P   271 
E   8     T   272 
G   9     A   273 
D  10     E   274 
L  11     F   275 
D  12     Q   276 
E  13     A   277 
I  14     M   278 
S  15     V   279 
S  16     Q   280 
F  17     A   281 
L  18     F   282 
H  19     H   283 
N  20     K   288 
T  21     V   289 
I  22     Y   290 
S  23     M   291 
D  24     D   292 
F  25     V   293 
I  26     V   294 
L  27     Y   295 
K  28     N   296 
R  29     H   297 
V  30     T   298 
S  31     A   299 
A  32     E   300 
K  33     G   301 
E  34     G   302 
I  35     T   303 
V  36     W   304 
D  37     T   305 
I  38     S   306 
D  39     S   307 
I  40     D   308 
T  41     P   309 
V  42     T   310 
L  43     T   311 
V  44     A   312 
E  45     T   313 
Y  46     I   314 
T  47     Y   315 
D  48     S   316 
E  49     W   317 
L  50     R   318 
K  51     G   319 
V  52     L   320 
D  53     D   321 
I  54     N   322 
S  55     A   323 
A  56     T   324 
E  57     Y   325 
L  58     Y   326 
Y  59     E   327 
L  60     L   328 
D  61     T   329 
E  62     S   330 
L  63     F   345 
S  64     N   346 
D  65     T   347 
A  66     Y   348 
D  67     N   349 
P  68     T   350 
G  69     V   351 
I  70     A   352 
V  71     Q   353 
D  72     N   354 
E  73     L   355 
A  74     I   356 
V  75     V   357 
D  76     D   358 
A  77     S   359 
A  78     L   360 
Y  79     A   361 
R  80     Y   362 
S  81     W   363 
L  82     A   364 
E  83     N   365 
S  84     T   366 
F  85     M   367 
L  86     V   369 
D  87     D   370 
G  88     G   371 
F  89     F   372 
R  90     R   373 
E  91     F   374 
TER
END


###    ALIGNMENT:   MASTER SEQUENCE vs MOST SIMILAR STRUCTURE IN THE PROFILE (FOR CAFASP EVALUATION)  ###
P1;hsd1cd1a2
structureX:hsd1cd1a2
NYTFRCLQMSSFANRSWSRTDSVVWLGDLQTHRWSNDSATISFTKPWSQGKLSNQQWEKLQHMFQVYRVS
FTRDIQELVKMMSPKEDYPIEIQLSAGCEMYPGNASESFLHVAFQGKYVVRFWGTSWQTVPGAPSWLDLP
IKVLNADQGTSATVQMLLNDTCPLFVRGLLEAGKSDLEK*
P1;QUERY tr|O26773 Hypothetical protein MTH677 - Methanobacterium thermoautotrophicum.
sequence
----------------------------------------------------------------------
--------MSLRKLTEGDLDEISSFLHNTI-SDFILKRVSAKEIVDIDITVLVEYTDELKVDISAELYLD
ELS-DADPGIVDEAVDAAYRSLESFLDGFRE--------*


###    ALIGNMENT:   MASTER SEQUENCE vs ALL STRUCTURES IN THE PROFILE  ###
SEQ:            target_1
PRF:            hsd1cd1a2
SEQLEN:         91
PRFLEN:         179
PRFSTRNUM:      1
ZSCORE:         1.88

P1;hsd1cd1a2
structureX:hsd1cd1a2
NYTFRCLQMSSFANRSWSRTDSVVWLGDLQTHRWSNDSATISFTKPWSQGKLSNQQWEKLQHMFQVYRVS
FTRDIQELVKMMSPKEDYPIEIQLSAGCEMYPGNASESFLHVAFQGKYVVRFWGTSWQTVPGAPSWLDLP
IKVLNADQGTSATVQMLLNDTCPLFVRGLLEAGKSDLEK*
P1;QUERY tr|O26773 Hypothetical protein MTH677 - Methanobacterium thermoautotrophicum.
sequence
----------------------------------------------------------------------
--------MSLRKLTEGDLDEISSFLHNTI-SDFILKRVSAKEIVDIDITVLVEYTDELKVDISAELYLD
ELS-DADPGIVDEAVDAAYRSLESFLDGFRE--------*


###      CASP FORMAT OUTPUT (EXPERIMENTAL ONLY, MAY CONTAINS ERRORS)      ###
###    IF NOT EQUIVELENT TO <<MASTER SEQUENCE vs MOST SIMILAR STRUCTURE   ###
###          IN THE PROFILE>> SECTION, THIS PART WILL BE DISCARDED.       ###

PFRMAT AL
TARGET QUERY tr|O26773 Hypothetical protein MTH677 - Methanobacterium thermoautotrophicum.
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=1.88 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<2.0 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1cd1a2
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  4
PARENT 1cd1_A
M   1     V    85 
S   2     K    86 
L   3     M    87 
R   4     M    88 
K   5     S    89 
L   6     P    90 
T   7     K    91 
E   8     E    92 
G   9     D    93 
D  10     Y    94 
L  11     P    95 
D  12     I    96 
E  13     E    97 
I  14     I    98 
S  15     Q    99 
S  16     L   100 
F  17     S   101 
L  18     A   102 
H  19     G   103 
N  20     C   104 
T  21     E   105 
I  22     M   106 
S  23     P   108 
D  24     G   109 
F  25     N   110 
I  26     A   111 
L  27     S   112 
K  28     E   113 
R  29     S   114 
V  30     F   115 
S  31     L   116 
A  32     H   117 
K  33     V   118 
E  34     A   119 
I  35     F   120 
V  36     Q   121 
D  37     G   122 
I  38     K   123 
D  39     Y   124 
I  40     V   125 
T  41     V   126 
V  42     R   127 
L  43     F   128 
V  44     W   129 
E  45     G   130 
Y  46     T   131 
T  47     S   132 
D  48     W   133 
E  49     Q   134 
L  50     T   135 
K  51     V   136 
V  52     P   137 
D  53     G   138 
I  54     A   139 
S  55     P   140 
A  56     S   141 
E  57     W   142 
L  58     L   143 
Y  59     D   144 
L  60     L   145 
D  61     P   146 
E  62     I   147 
L  63     K   148 
S  64     V   149 
D  65     N   151 
A  66     A   152 
D  67     D   153 
P  68     Q   154 
G  69     G   155 
I  70     T   156 
V  71     S   157 
D  72     A   158 
E  73     T   159 
A  74     V   160 
V  75     Q   161 
D  76     M   162 
A  77     L   163 
A  78     L   164 
Y  79     N   165 
R  80     D   166 
S  81     T   167 
L  82     C   168 
E  83     P   169 
S  84     L   170 
F  85     F   171 
L  86     V   172 
D  87     R   173 
G  88     G   174 
F  89     L   175 
R  90     L   176 
E  91     E   177 
TER
END


###    ALIGNMENT:   MASTER SEQUENCE vs MOST SIMILAR STRUCTURE IN THE PROFILE (FOR CAFASP EVALUATION)  ###
P1;hs1n2fa
structureX:hs1n2fa
MQTIKALYTATATATGGRDGRAVSSDGVLDVKLSTPREMGGQGGAATNPEQLFAAGYSACFIGAMKFVAG
QRKQTLPADASITGKVGIGQIPGGFGLEVELHINL-------PGMEREAAEALVAAAHQVCPYSNATRGN
IDVRLNVSV*
P1;QUERY tr|O26773 Hypothetical protein MTH677 - Methanobacterium thermoautotrophicum.
sequence
------------------------------------------MSLRKLTEGDLDEISSFLHNTISDFILK
RVSAKEIVDIDITVLVEYTDE---LKVDISAELYLDELSDADPGIVDEAVDAAYRSLESFLDGFRE----
---------*


###    ALIGNMENT:   MASTER SEQUENCE vs ALL STRUCTURES IN THE PROFILE  ###
SEQ:            target_1
PRF:            hs1n2fa
SEQLEN:         91
PRFLEN:         142
PRFSTRNUM:      1
ZSCORE:         1.85

P1;hs1n2fa
structureX:hs1n2fa
MQTIKALYTATATATGGRDGRAVSSDGVLDVKLSTPREMGGQGGAATNPEQLFAAGYSACFIGAMKFVAG
QRKQTLPADASITGKVGIGQIPGGFGLEVELHINL-------PGMEREAAEALVAAAHQVCPYSNATRGN
IDVRLNVSV*
P1;QUERY tr|O26773 Hypothetical protein MTH677 - Methanobacterium thermoautotrophicum.
sequence
------------------------------------------MSLRKLTEGDLDEISSFLHNTISDFILK
RVSAKEIVDIDITVLVEYTDE---LKVDISAELYLDELSDADPGIVDEAVDAAYRSLESFLDGFRE----
---------*


###      CASP FORMAT OUTPUT (EXPERIMENTAL ONLY, MAY CONTAINS ERRORS)      ###
###    IF NOT EQUIVELENT TO <<MASTER SEQUENCE vs MOST SIMILAR STRUCTURE   ###
###          IN THE PROFILE>> SECTION, THIS PART WILL BE DISCARDED.       ###

PFRMAT AL
TARGET QUERY tr|O26773 Hypothetical protein MTH677 - Methanobacterium thermoautotrophicum.
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=1.85 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<2.0 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hs1n2fa
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  5
PARENT 1n2f_A
M   1     G    43 
S   2     G    44 
L   3     A    45 
R   4     A    46 
K   5     T    47 
L   6     N    48 
T   7     P    49 
E   8     E    50 
G   9     Q    51 
D  10     L    52 
L  11     F    53 
D  12     A    54 
E  13     A    55 
I  14     G    56 
S  15     Y    57 
S  16     S    58 
F  17     A    59 
L  18     C    60 
H  19     F    61 
N  20     I    62 
T  21     G    63 
I  22     A    64 
S  23     M    65 
D  24     K    66 
F  25     F    67 
I  26     V    68 
L  27     A    69 
K  28     G    70 
R  29     Q    71 
V  30     R    72 
S  31     K    73 
A  32     Q    74 
K  33     T    75 
E  34     L    76 
I  35     P    77 
V  36     A    78 
D  37     D    79 
I  38     A    80 
D  39     S    81 
I  40     I    82 
T  41     T    83 
V  42     G    84 
L  43     K    85 
V  44     V    86 
E  45     G    87 
Y  46     I    88 
T  47     G    89 
D  48     Q    90 
E  49     I    91 
L  50     F    95 
K  51     G    96 
V  52     L    97 
D  53     E    98 
I  54     V    99 
S  55     E   100 
A  56     L   101 
E  57     H   102 
L  58     I   103 
Y  59     N   104 
L  60     L   105 
P  68     P   106 
G  69     G   107 
I  70     M   108 
V  71     E   109 
D  72     R   110 
E  73     E   111 
A  74     A   112 
V  75     A   113 
D  76     E   114 
A  77     A   115 
A  78     L   116 
Y  79     V   117 
R  80     A   118 
S  81     A   119 
L  82     A   120 
E  83     H   121 
S  84     Q   122 
F  85     V   123 
L  86     C   124 
D  87     P   125 
G  88     Y   126 
F  89     S   127 
R  90     N   128 
E  91     A   129 
TER
END


###    ALIGNMENT:   MASTER SEQUENCE vs MOST SIMILAR STRUCTURE IN THE PROFILE (FOR CAFASP EVALUATION)  ###
P1;hs1hgva
structureX:hs1hgva
------------------------------------------MDFNPSEVASQVTNYIQAIAAAGVGVLA
LAIGLSAAWKYAKRFLKG---*
P1;QUERY tr|O26773 Hypothetical protein MTH677 - Methanobacterium thermoautotrophicum.
sequence
MSLRKLTEGDLDEISSFLHNTISDFILKRVSAKEIVDIDITVLVEYTDELKVDISAELYLDELSDADPGI
VDEAVDAAYRSLESFLDGFRE*


###    ALIGNMENT:   MASTER SEQUENCE vs ALL STRUCTURES IN THE PROFILE  ###
SEQ:            target_1
PRF:            hs1hgva
SEQLEN:         91
PRFLEN:         46
PRFSTRNUM:      1
ZSCORE:         1.75

P1;hs1hgva
structureX:hs1hgva
------------------------------------------MDFNPSEVASQVTNYIQAIAAAGVGVLA
LAIGLSAAWKYAKRFLKG---*
P1;QUERY tr|O26773 Hypothetical protein MTH677 - Methanobacterium thermoautotrophicum.
sequence
MSLRKLTEGDLDEISSFLHNTISDFILKRVSAKEIVDIDITVLVEYTDELKVDISAELYLDELSDADPGI
VDEAVDAAYRSLESFLDGFRE*


###      CASP FORMAT OUTPUT (EXPERIMENTAL ONLY, MAY CONTAINS ERRORS)      ###
###    IF NOT EQUIVELENT TO <<MASTER SEQUENCE vs MOST SIMILAR STRUCTURE   ###
###          IN THE PROFILE>> SECTION, THIS PART WILL BE DISCARDED.       ###

PFRMAT AL
TARGET QUERY tr|O26773 Hypothetical protein MTH677 - Methanobacterium thermoautotrophicum.
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=1.75 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<2.0 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hs1hgva
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  6
PARENT 1hgv_A
L  43     M     1 
V  44     D     2 
E  45     F     3 
Y  46     N     4 
T  47     P     5 
D  48     S     6 
E  49     E     7 
L  50     V     8 
K  51     A     9 
V  52     S    10 
D  53     Q    11 
I  54     V    12 
S  55     T    13 
A  56     N    14 
E  57     Y    15 
L  58     I    16 
Y  59     Q    17 
L  60     A    18 
D  61     I    19 
E  62     A    20 
L  63     A    21 
S  64     A    22 
D  65     G    23 
A  66     V    24 
D  67     G    25 
P  68     V    26 
G  69     L    27 
I  70     A    28 
V  71     L    29 
D  72     A    30 
E  73     I    31 
A  74     G    32 
V  75     L    33 
D  76     S    34 
A  77     A    35 
A  78     A    36 
Y  79     W    37 
R  80     K    38 
S  81     Y    39 
L  82     A    40 
E  83     K    41 
S  84     R    42 
F  85     F    43 
L  86     L    44 
D  87     K    45 
G  88     G    46 
TER
END


###    ALIGNMENT:   MASTER SEQUENCE vs MOST SIMILAR STRUCTURE IN THE PROFILE (FOR CAFASP EVALUATION)  ###
P1;1imua
structureX:1imua
--MTLNITSKQMDITPAIREHLEERLAKLGKWQTQLISPHFVLNKVPNGFSVEASIGTPLGNLLASATSD
DMYKAINEVEEKLERQLNKLQHKSESRRADERLKDSFEN*
P1;QUERY tr|O26773 Hypothetical protein MTH677 - Methanobacterium thermoautotrophicum.
sequence
MSLRKLTEGDLDEISSFLHNTISDFILKRVSAKEIVDIDITVLVEYTDELKVDISAELYLDELSDADPGI
-VDEAVDAAYRSLESFLDGFRE-----------------*


###    ALIGNMENT:   MASTER SEQUENCE vs ALL STRUCTURES IN THE PROFILE  ###
SEQ:            target_1
PRF:            Ribosomal_S30AE
SEQLEN:         91
PRFLEN:         125
PRFSTRNUM:      2
ZSCORE:         1.67

P1;1imua
structureX:1imua
--MTLNITSKQMDITPAIREHLEERLAKLGKWQTQLISPHFVLNKVPNGFSVEASIGTPLGNLLASATSD
DMYKAINEVEEKLERQLNKLQHKSESRRADERLKDSFEN------------------*
P1;1l4sa
structureX:1l4sa
---TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVLVASGKHE
DMYTAINELINKLERQLNKLQHKGE------------ARRAATSVKDANFVEEVEEE*
P1;QUERY tr|O26773 Hypothetical protein MTH677 - Methanobacterium thermoautotrophicum.
sequence
MSLRKLTEGDLDEISSFLHNTISDFILKRVSAKEIVDIDITVLVEYTDELKVDISAELYLDELSDADPGI
-VDEAVDAAYRSLESFLDGFRE-----------------------------------*


###      CASP FORMAT OUTPUT (EXPERIMENTAL ONLY, MAY CONTAINS ERRORS)      ###
###    IF NOT EQUIVELENT TO <<MASTER SEQUENCE vs MOST SIMILAR STRUCTURE   ###
###          IN THE PROFILE>> SECTION, THIS PART WILL BE DISCARDED.       ###

PFRMAT AL
TARGET QUERY tr|O26773 Hypothetical protein MTH677 - Methanobacterium thermoautotrophicum.
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=1.67 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<2.0 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: Ribosomal_S30AE
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  7
PARENT 1imu_A
L   3     M     1 
R   4     T     2 
K   5     L     3 
L   6     N     4 
T   7     I     5 
E   8     T     6 
G   9     S     7 
D  10     K     8 
L  11     Q     9 
D  12     M    10 
E  13     D    11 
I  14     I    12 
S  15     T    13 
S  16     P    14 
F  17     A    15 
L  18     I    16 
H  19     R    17 
N  20     E    18 
T  21     H    19 
I  22     L    20 
S  23     E    21 
D  24     E    22 
F  25     R    23 
I  26     L    24 
L  27     A    25 
K  28     K    26 
R  29     L    27 
V  30     G    28 
S  31     K    29 
A  32     W    30 
K  33     Q    31 
E  34     T    32 
I  35     Q    33 
V  36     L    34 
D  37     I    35 
I  38     S    36 
D  39     P    37 
I  40     H    38 
T  41     F    39 
V  42     V    40 
L  43     L    41 
V  44     N    42 
E  45     K    43 
Y  46     V    44 
T  47     P    45 
D  48     N    46 
E  49     G    47 
L  50     F    48 
K  51     S    49 
V  52     V    50 
D  53     E    51 
I  54     A    52 
S  55     S    53 
A  56     I    54 
E  57     G    55 
L  58     T    56 
Y  59     P    57 
L  60     L    58 
D  61     G    59 
E  62     N    60 
L  63     L    61 
S  64     L    62 
D  65     A    63 
A  66     S    64 
D  67     A    65 
P  68     T    66 
G  69     S    67 
I  70     D    68 
V  71     M    70 
D  72     Y    71 
E  73     K    72 
A  74     A    73 
V  75     I    74 
D  76     N    75 
A  77     E    76 
A  78     V    77 
Y  79     E    78 
R  80     E    79 
S  81     K    80 
L  82     L    81 
E  83     E    82 
S  84     R    83 
F  85     Q    84 
L  86     L    85 
D  87     N    86 
G  88     K    87 
F  89     L    88 
R  90     Q    89 
E  91     H    90 
TER
END


###    ALIGNMENT:   MASTER SEQUENCE vs MOST SIMILAR STRUCTURE IN THE PROFILE (FOR CAFASP EVALUATION)  ###
P1;hs1gbrb
structureX:hs1gbrb
-------------------------------------------------------------------SPL
LPKLPPKTYKRE---------*
P1;QUERY tr|O26773 Hypothetical protein MTH677 - Methanobacterium thermoautotrophicum.
sequence
MSLRKLTEGDLDEISSFLHNTISDFILKRVSAKEIVDIDITVLVEYTDELKVDISAELYLDELSDADPGI
VDEAVDAAYRSLESFLDGFRE*


###    ALIGNMENT:   MASTER SEQUENCE vs ALL STRUCTURES IN THE PROFILE  ###
SEQ:            target_1
PRF:            hs1gbrb
SEQLEN:         91
PRFLEN:         15
PRFSTRNUM:      1
ZSCORE:         1.66

P1;hs1gbrb
structureX:hs1gbrb
-------------------------------------------------------------------SPL
LPKLPPKTYKRE---------*
P1;QUERY tr|O26773 Hypothetical protein MTH677 - Methanobacterium thermoautotrophicum.
sequence
MSLRKLTEGDLDEISSFLHNTISDFILKRVSAKEIVDIDITVLVEYTDELKVDISAELYLDELSDADPGI
VDEAVDAAYRSLESFLDGFRE*


###      CASP FORMAT OUTPUT (EXPERIMENTAL ONLY, MAY CONTAINS ERRORS)      ###
###    IF NOT EQUIVELENT TO <<MASTER SEQUENCE vs MOST SIMILAR STRUCTURE   ###
###          IN THE PROFILE>> SECTION, THIS PART WILL BE DISCARDED.       ###

PFRMAT AL
TARGET QUERY tr|O26773 Hypothetical protein MTH677 - Methanobacterium thermoautotrophicum.
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=1.66 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<2.0 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hs1gbrb
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  8
PARENT 1gbr_B
P  68     S     1 
G  69     P     2 
I  70     L     3 
V  71     L     4 
D  72     P     5 
E  73     K     6 
A  74     L     7 
V  75     P     8 
D  76     P     9 
A  77     K    10 
A  78     T    11 
Y  79     Y    12 
R  80     K    13 
S  81     R    14 
L  82     E    15 
TER
END


###    ALIGNMENT:   MASTER SEQUENCE vs MOST SIMILAR STRUCTURE IN THE PROFILE (FOR CAFASP EVALUATION)  ###
P1;hs1hlva
structureX:hs1hlva
MGPKRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAILASERKYGVASTCRKTNK
LSPYDKLEGLLIAWFQQIRAAGLPVKGIILKEKALRIAEELGMDDFTASNGWLDRFRRRRS*
P1;QUERY tr|O26773 Hypothetical protein MTH677 - Methanobacterium thermoautotrophicum.
sequence
--------------------MSLRKLTEGDLDEISSFLHNTISDFI-----LKRVSAKEIVDIDITVLVE
YTDELKVDISAELYLDELSDADPGIVDEAVDAAYRSL------------ESFLDGFRE---*


###    ALIGNMENT:   MASTER SEQUENCE vs ALL STRUCTURES IN THE PROFILE  ###
SEQ:            target_1
PRF:            hs1hlva
SEQLEN:         91
PRFLEN:         131
PRFSTRNUM:      1
ZSCORE:         1.64

P1;hs1hlva
structureX:hs1hlva
MGPKRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAILASERKYGVASTCRKTNK
LSPYDKLEGLLIAWFQQIRAAGLPVKGIILKEKALRIAEELGMDDFTASNGWLDRFRRRRS*
P1;QUERY tr|O26773 Hypothetical protein MTH677 - Methanobacterium thermoautotrophicum.
sequence
--------------------MSLRKLTEGDLDEISSFLHNTISDFI-----LKRVSAKEIVDIDITVLVE
YTDELKVDISAELYLDELSDADPGIVDEAVDAAYRSL------------ESFLDGFRE---*


###      CASP FORMAT OUTPUT (EXPERIMENTAL ONLY, MAY CONTAINS ERRORS)      ###
###    IF NOT EQUIVELENT TO <<MASTER SEQUENCE vs MOST SIMILAR STRUCTURE   ###
###          IN THE PROFILE>> SECTION, THIS PART WILL BE DISCARDED.       ###

PFRMAT AL
TARGET QUERY tr|O26773 Hypothetical protein MTH677 - Methanobacterium thermoautotrophicum.
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=1.64 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<2.0 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hs1hlva
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  9
PARENT 1hlv_A
M   1     E    21 
S   2     E    22 
L   3     N    23 
R   4     P    24 
K   5     D    25 
L   6     L    26 
T   7     R    27 
E   8     K    28 
G   9     G    29 
D  10     E    30 
L  11     I    31 
D  12     A    32 
E  13     R    33 
I  14     R    34 
S  15     F    35 
S  16     N    36 
F  17     I    37 
L  18     P    38 
H  19     P    39 
N  20     S    40 
T  21     T    41 
I  22     L    42 
S  23     S    43 
D  24     T    44 
F  25     I    45 
I  26     L    46 
L  27     I    52 
K  28     L    53 
R  29     A    54 
V  30     S    55 
S  31     E    56 
A  32     R    57 
K  33     K    58 
E  34     Y    59 
I  35     G    60 
V  36     V    61 
D  37     A    62 
I  38     S    63 
D  39     T    64 
I  40     C    65 
T  41     R    66 
V  42     K    67 
L  43     T    68 
V  44     N    69 
E  45     K    70 
Y  46     L    71 
T  47     S    72 
D  48     P    73 
E  49     Y    74 
L  50     D    75 
K  51     K    76 
V  52     L    77 
D  53     E    78 
I  54     G    79 
S  55     L    80 
A  56     L    81 
E  57     I    82 
L  58     A    83 
Y  59     W    84 
L  60     F    85 
D  61     Q    86 
E  62     Q    87 
L  63     I    88 
S  64     R    89 
D  65     A    90 
A  66     A    91 
D  67     G    92 
P  68     L    93 
G  69     P    94 
I  70     V    95 
V  71     K    96 
D  72     G    97 
E  73     I    98 
A  74     I    99 
V  75     L   100 
D  76     K   101 
A  77     E   102 
A  78     K   103 
Y  79     A   104 
R  80     L   105 
S  81     R   106 
L  82     I   107 
E  83     N   120 
S  84     G   121 
F  85     W   122 
L  86     L   123 
D  87     D   124 
G  88     R   125 
F  89     F   126 
R  90     R   127 
E  91     R   128 
TER
END


###    ALIGNMENT:   MASTER SEQUENCE vs MOST SIMILAR STRUCTURE IN THE PROFILE (FOR CAFASP EVALUATION)  ###
P1;hsd1uok_2
structureX:hsd1uok_2
MEKQWWKESVVYQIYPRSFMDSNGDGIGDLRGIISKLDYLKELGIDVIWLSPVYESPNDDNGYDISDYCK
IMNEFGTMEDWDELLHEMHERNMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGKEGKEPNNW
GAAFSGSAWQYDEMTDEYYLHLFSKKQPDLNWDNEKVRQDVYEMMKFWLEKG-IDGFRMDVINFISKEEG
LPTVETEEEGYVSGHKHFMNGPNIHKYLHEMNEEVLSHYDIMTVGEMPGVTTEEAKLYTGEERKELQMVF
QFEHMDLDSGEGGKWDVKPCSLLTLKENLTKWQKALEHTGWNSLYWNNHDQPRVVSRFGNDGMYRIESAK
MLATVLHMMKGTPYIYQGEEIGMTNVRFESIDEYRDIETLNMYKEKVMERGEDIEKVMQSIYIKGRDNAR
TPMQWDDQNHAGFTTGEPWITVNPNYKEINVKQAIQNKDSIFYYYKKLIELRKNNEIVVY*
P1;QUERY tr|O26773 Hypothetical protein MTH677 - Methanobacterium thermoautotrophicum.
sequence
----------------------------------------------------------------------
----------------------------------------------------------------------
-------------------MSLRKLTEGDLDEISSFLHNTISDFILKRVSAKEIVDIDITVLVEYTDELK
VDISAELYLDELSDADPGIVDEAVDAAYRSLESFLDGFRE------------------------------
----------------------------------------------------------------------
----------------------------------------------------------------------
------------------------------------------------------------*


###    ALIGNMENT:   MASTER SEQUENCE vs ALL STRUCTURES IN THE PROFILE  ###
SEQ:            target_1
PRF:            hsd1uok_2
SEQLEN:         91
PRFLEN:         479
PRFSTRNUM:      1
ZSCORE:         1.63

P1;hsd1uok_2
structureX:hsd1uok_2
MEKQWWKESVVYQIYPRSFMDSNGDGIGDLRGIISKLDYLKELGIDVIWLSPVYESPNDDNGYDISDYCK
IMNEFGTMEDWDELLHEMHERNMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGKEGKEPNNW
GAAFSGSAWQYDEMTDEYYLHLFSKKQPDLNWDNEKVRQDVYEMMKFWLEKG-IDGFRMDVINFISKEEG
LPTVETEEEGYVSGHKHFMNGPNIHKYLHEMNEEVLSHYDIMTVGEMPGVTTEEAKLYTGEERKELQMVF
QFEHMDLDSGEGGKWDVKPCSLLTLKENLTKWQKALEHTGWNSLYWNNHDQPRVVSRFGNDGMYRIESAK
MLATVLHMMKGTPYIYQGEEIGMTNVRFESIDEYRDIETLNMYKEKVMERGEDIEKVMQSIYIKGRDNAR
TPMQWDDQNHAGFTTGEPWITVNPNYKEINVKQAIQNKDSIFYYYKKLIELRKNNEIVVY*
P1;QUERY tr|O26773 Hypothetical protein MTH677 - Methanobacterium thermoautotrophicum.
sequence
----------------------------------------------------------------------
----------------------------------------------------------------------
-------------------MSLRKLTEGDLDEISSFLHNTISDFILKRVSAKEIVDIDITVLVEYTDELK
VDISAELYLDELSDADPGIVDEAVDAAYRSLESFLDGFRE------------------------------
----------------------------------------------------------------------
----------------------------------------------------------------------
------------------------------------------------------------*


###      CASP FORMAT OUTPUT (EXPERIMENTAL ONLY, MAY CONTAINS ERRORS)      ###
###    IF NOT EQUIVELENT TO <<MASTER SEQUENCE vs MOST SIMILAR STRUCTURE   ###
###          IN THE PROFILE>> SECTION, THIS PART WILL BE DISCARDED.       ###

PFRMAT AL
TARGET QUERY tr|O26773 Hypothetical protein MTH677 - Methanobacterium thermoautotrophicum.
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=1.63 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<2.0 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1uok_2
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  10
PARENT 1uok
M   1     L   160 
S   2     H   161 
L   3     L   162 
R   4     F   163 
K   5     S   164 
L   6     K   165 
T   7     K   166 
E   8     Q   167 
G   9     P   168 
D  10     D   169 
L  11     L   170 
D  12     N   171 
E  13     W   172 
I  14     D   173 
S  15     N   174 
S  16     E   175 
F  17     K   176 
L  18     V   177 
H  19     R   178 
N  20     Q   179 
T  21     D   180 
I  22     V   181 
S  23     Y   182 
D  24     E   183 
F  25     M   184 
I  26     M   185 
L  27     K   186 
K  28     F   187 
R  29     W   188 
V  30     L   189 
S  31     E   190 
A  32     K   191 
K  33     G   192 
I  35     I   193 
V  36     D   194 
D  37     G   195 
I  38     F   196 
D  39     R   197 
I  40     M   198 
T  41     D   199 
V  42     V   200 
L  43     I   201 
V  44     N   202 
E  45     F   203 
Y  46     I   204 
T  47     S   205 
D  48     K   206 
E  49     E   207 
L  50     E   208 
K  51     G   209 
V  52     L   210 
D  53     P   211 
I  54     T   212 
S  55     V   213 
A  56     E   214 
E  57     T   215 
L  58     E   216 
Y  59     E   217 
L  60     E   218 
D  61     G   219 
E  62     Y   220 
L  63     V   221 
S  64     S   222 
D  65     G   223 
A  66     H   224 
D  67     K   225 
P  68     H   226 
G  69     F   227 
I  70     M   228 
V  71     N   229 
D  72     G   230 
E  73     P   231 
A  74     N   232 
V  75     I   233 
D  76     H   234 
A  77     K   235 
A  78     Y   236 
Y  79     L   237 
R  80     H   238 
S  81     E   239 
L  82     M   240 
E  83     N   241 
S  84     E   242 
F  85     E   243 
L  86     V   244 
D  87     L   245 
G  88     S   246 
F  89     H   247 
R  90     Y   248 
E  91     D   249 
TER
END