SAM_T02 Results for O26773
When SAM_T02 finishes, you will see links to the following files below:
- Inputs
- your submitted sequence in a2m format
- SAM_T02 multiple alignment in a2m format
- SAM_T02 multiple alignment in pretty html format
- SAM_T02 hidden Markov model
- Secondary Structure Prediction
- DSSP secondary structure predictions
- STRIDE secondary structure predictions
- STR secondary structure predictions
- DSSP three-state EHL secondary structure predictions
- Sequence Logos
- SAM_T02 multiple alignment
- DSSP EBGHSTL secondary structure prediction
- STRIDE EBGHTL secondary structure prediction
- STR secondary structure prediction
- DSSP EHL secondary structure prediction
- Target model scores with annotation
- DSSP two-track target model scores of T2K template library
- STRIDE two-track target model scores of T2K template library
- STR two-track target model scores of T2K template library
- single-track target model scores of PDB
- Annotated Template model scores
- Top Hits -- best scoring templates from all models
- Alignments for Top Hits
- best 50 alignments
- top alignments in CASP AL format
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Description
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Link to file
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Date
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Inputs and Multiple Alignments
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Secondary Structure Prediction
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Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu,
S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey,
R. ``What is the value added by human intervention in protein structure prediction?''
Proteins: Structure Function and Genetics 45(S5):86-91,2001
SAM_T02 web system designed by Rachel Karchin and Kevin Karplus
rachelk@soe.ucsc.edu
karplus@soe.ucsc.edu