#==================================================================== # Perl-RDB EVA:method.rdb=results of all ids for method=ssearch of type=threading # best values of first 1 # Copyright : Volker Eyrich & Burkhard Rost, CUBIC Columbia Univ, New York City # Email : rost@columbia.edu # WWW : http://cubic.bioc.columbia.edu/eva # Version : version 0.1: 2000_04_12 # # -------------------------------------------------------------------------------- # # Notation used : # # NOTATION BODY : # NOTATION date : date when added [yyyy_mm_dd] # NOTATION Target : identifier of target protein # NOTATION Method : abbreviation of prediction method (seq=sequence) # NOTATION Rank : rank of model in method prediction # NOTATION Template : identifier of template protein # NOTATION ModN% : percent of target residues in model # NOTATION TgtN : number of residues in target structure # NOTATION TmptN : number of residues in template structure # NOTATION TmptZ_CE : CE Z-score of a template chosen by a method # NOTATION TmptStrN_CE% : percent of target residues in CE alignment of template # : and target structures # NOTATION TmptRmsd_CE : rmsd (in Anstroms) of CE alignment of template and target structures # NOTATION ModStrN_CE% : percent of target residues in CE alignment of method model and # : target structure # NOTATION ModRmsd_CE : rmsd (in Anstroms) of CE alignment of method model and query structures # NOTATION ModZ_CE : CE Z-score of a method model # NOTATION NXA% : percent of target residues found within a distance of X Angstroms # : in CE structural alignment of model and target structure # NOTATION ALX% : percent of target residues found within a shift of X residues # : in CE structurel alignment of model and target structure # date Method Target -lnP_MMT Z_CE Q_LG1 Q_LG2 N3.5A_Gbl% N5A_Gbl% ModN% ServScore N3.5A_ext_CE% N5A_ext_CE% TgtN 2000_11_15 ssearch 1by6:A 0.1 0.7 -1.696667e+01 -1.696667e+01 0.0e+00 0.0e+00 1.0e+02 5.8 2.5e+01 3.3e+01 36 2000_07_19 ssearch 1c01:A 1.3 2.3 -1.520901e+01 -5.434915e+00 3.9e+00 6.6e+00 5.3e+01 3.8 3.0e+01 3.6e+01 76 2000_07_19 ssearch 1c55:A 5.2 3.7 1.999990e+01 8.717392e+00 8.0e+01 9.0e+01 9.0e+01 1.2e-06 8.2e+01 8.5e+01 40 2000_07_12 ssearch 1c8u:A 2.9 2.6 -5.087377e+00 -2.842129e-01 0.0e+00 0.0e+00 4.2e+01 6.5 1.2e+01 1.4e+01 285 2000_12_04 ssearch 1ci6:A 8.2 5.0 -1.131111e+01 3.839057e+01 9.6e+01 9.6e+01 9.6e+01 0.03 8.8e+01 8.8e+01 56 2002_05_01 ssearch 1cix:A 2.1 2.6 -9.858704e+00 7.248440e+00 2.0e+01 3.9e+01 8.4e+01 0.75 6.8e+01 7.7e+01 44 2001_02_28 ssearch 1cwy:A 1.1 2.0 -1.107380e+00 -9.658867e-02 0.0e+00 6.0e-01 9.1e+01 3.5 5.0e+00 7.6e+00 500 2000_09_20 ssearch 1d1h:A 4.5 3.5 2.505112e+01 2.290388e+01 8.3e+01 8.3e+01 9.1e+01 0.15 8.3e+01 8.6e+01 35 2000_09_27 ssearch 1d2o:A 2.0 3.5 -6.429474e+00 3.784540e+00 1.0e+01 1.8e+01 5.1e+01 0.68 2.6e+01 3.6e+01 187 2000_06_21 ssearch 1d6b:A 5.8 4.1 3.121956e+01 3.121955e+01 7.1e+01 9.5e+01 1.0e+02 0.0001 8.6e+01 9.0e+01 42 2001_04_04 ssearch 1daq:A 3.7 2.3 -1.412674e+00 -7.157688e-01 4.2e+00 5.6e+00 1.0e+02 21 2.3e+01 3.2e+01 71 2001_02_21 ssearch 1dc1:A 1.8 2.8 -3.809403e+00 6.714376e-01 0.0e+00 2.3e+00 5.2e+01 5.2 2.0e+01 2.4e+01 310 2001_07_18 ssearch 1dcj:A 1.2 1.6 -7.869968e+00 -3.171462e-01 0.0e+00 0.0e+00 9.5e+01 1.3 4.1e+01 4.6e+01 81 2000_11_08 ssearch 1dd3:C 0.7 1.2 -1.908749e+01 -1.908124e+01 1.2e+01 3.4e+01 1.0e+02 48 4.4e+01 5.0e+01 32 2000_11_27 ssearch 1dh3:A 5.7 5.0 -1.152453e+01 2.708562e+01 9.3e+01 9.3e+01 9.6e+01 0.0036 9.3e+01 9.3e+01 55 2000_12_13 ssearch 1dkc:A 1.2 1.2 -1.607295e+01 -1.166163e+01 7.9e+00 1.3e+01 1.0e+02 0.93 3.4e+01 4.2e+01 38 2000_09_15 ssearch 1dl0:A 0.4 1.2 -1.850806e+01 -1.650790e+01 2.7e+00 2.4e+01 8.9e+01 0.17 2.4e+01 4.3e+01 37 2000_12_13 ssearch 1dl9:A 1.3 1.2 -4.057088e+00 -1.345933e+00 8.2e-01 2.5e+00 6.2e+01 2.5 1.1e+01 1.6e+01 243 2000_09_20 ssearch 1dly:A 2.4 2.6 -1.196576e+00 -2.272679e-01 1.7e+00 2.5e+00 9.4e+01 1.4 1.7e+01 2.2e+01 121 2000_07_12 ssearch 1dov:A 2.1 1.2 -2.145896e+00 -1.111501e+00 0.0e+00 1.1e+00 9.3e+01 4.8 1.5e+01 1.7e+01 181 2000_07_12 ssearch 1dow:B 0.4 0 -1.970323e+01 -1.970323e+01 0.0e+00 0.0e+00 1.0e+02 15 0.0e+00 0.0e+00 31 2001_04_04 ssearch 1dp3:A 1.3 2.6 -1.090914e+01 -1.032931e+01 9.1e+00 2.2e+01 9.6e+01 6.2 4.2e+01 5.3e+01 55 2000_11_10 ssearch 1dpu:A 1.1 2.6 -8.852174e+00 1.246372e-01 0.0e+00 1.4e+00 1.0e+02 3.6 3.0e+01 3.6e+01 69 2000_09_13 ssearch 1dqc:A 0.6 0.7 -8.852173e+00 -8.271604e+00 4.1e+00 9.6e+00 9.5e+01 0.98 2.3e+01 3.2e+01 73 2001_01_10 ssearch 1dqe:A 1.1 2.3 -5.616943e+00 -2.395807e+00 0.0e+00 1.5e+00 7.4e+01 1.6 2.8e+01 3.7e+01 137 2000_07_06 ssearch 1dry:A 0.8 1.2 -1.639803e+00 -1.058878e+00 1.9e+00 3.8e+00 9.5e+01 6.6 9.2e+00 1.1e+01 316 2000_07_12 ssearch 1dtd:B 0.1 0.0 -1.017992e+01 -9.731569e+00 1.6e+00 1.1e+01 9.8e+01 2.4 2.0e+01 3.3e+01 61 2000_07_19 ssearch 1dvo:A 1.6 1.6 2.939061e+00 -1.643585e+00 0.0e+00 2.0e+00 9.3e+01 14 1.7e+01 2.0e+01 152 2000_06_22 ssearch 1dw3:A 6.5 3.1 3.202344e-01 1.175756e+01 9.8e+00 1.9e+01 9.6e+01 2 5.3e+01 5.6e+01 112 2000_08_23 ssearch 1dw7:A 1.4 2.6 -6.766046e+00 -4.471411e+00 1.4e+00 7.0e+00 9.7e+01 23 3.0e+01 4.5e+01 71 2000_11_03 ssearch 1e0f:J 0.2 2.3 -1.745116e+01 -1.105988e+01 3.6e+00 2.2e+01 6.4e+01 0.19 2.2e+01 3.3e+01 55 2000_06_21 ssearch 1e0g:A 1.4 2.0 -1.152471e+01 -8.418638e+00 4.2e+00 1.9e+01 1.0e+02 2.3 4.6e+01 5.0e+01 48 2000_06_21 ssearch 1e1d:A 1.0 2.0 5.658957e-01 -5.388928e-01 3.6e-01 5.4e-01 3.2e+01 1.5 5.1e+00 6.3e+00 553 2000_07_07 ssearch 1e2t:F 1.4 2.6 -5.132197e+00 2.529472e-01 0.0e+00 1.1e+00 4.0e+01 7.8 1.1e+01 1.6e+01 274 2000_12_03 ssearch 1e2x:A 3.4 3.9 -1.045630e+00 6.242699e+00 1.4e+00 3.6e+00 8.7e+01 17 2.3e+01 3.2e+01 222 2001_07_12 ssearch 1e4s:A 5.2 3.7 -1.696667e+01 1.626357e+01 8.3e+01 9.7e+01 1.0e+02 0.0024 8.6e+01 9.4e+01 36 2001_07_12 ssearch 1e4t:A 4.5 3.9 1.612624e+01 1.569036e+01 7.6e+01 8.4e+01 9.7e+01 0.0048 8.1e+01 8.1e+01 37 2001_07_26 ssearch 1e5r:A 0.3 1.2 -5.175785e+00 -2.136871e+00 3.8e-01 7.7e-01 4.5e+01 2.2 9.2e+00 1.2e+01 260 2000_10_25 ssearch 1e68:A 0.6 2.8 -8.686165e+00 -5.050969e+00 7.1e+00 1.4e+01 1.0e+02 24 3.9e+01 4.3e+01 70 2000_11_03 ssearch 1e79:I 0.6 2.3 -1.011790e+01 -5.220118e+00 4.3e+00 1.5e+01 8.7e+01 35 4.9e+01 4.9e+01 47 2001_09_07 ssearch 1e8p:A 0.4 1.2 -1.327826e+01 -1.238622e+01 1.1e+01 1.7e+01 1.0e+02 5.8 3.5e+01 4.1e+01 46 2001_10_18 ssearch 1e9k:A 0.5 2.3 -1.606620e+01 -1.606845e+01 7.9e+00 1.1e+01 1.0e+02 3.2 5.0e+01 6.1e+01 38 2001_01_31 ssearch 1ee6:A 3.0 2.3 -2.964334e+00 -1.037202e+00 5.1e-01 1.0e+00 9.7e+01 5.7 1.7e+01 2.4e+01 197 2000_08_03 ssearch 1eej:A 1.9 2.0 8.882479e-01 -2.052745e+00 2.3e+00 5.6e+00 9.8e+01 1.1 1.7e+01 2.2e+01 216 2001_02_21 ssearch 1ehk:C 4.7 4.1 3.909337e+01 4.005627e+01 9.1e+01 1.0e+02 1.0e+02 8.5 9.1e+01 9.7e+01 33 2000_11_17 ssearch 1ehx:A 1.4 2.6 -4.336631e-01 4.735109e+00 6.4e+00 2.7e+01 9.3e+01 4.9 5.4e+01 6.2e+01 94 2000_11_03 ssearch 1eij:A 2.7 3.1 -8.172461e+00 -5.157982e+00 1.4e+00 4.2e+00 9.6e+01 22 2.5e+01 3.5e+01 72 2000_07_12 ssearch 1ej6:D 1.7 0.7 -3.227452e+00 -9.917065e-01 2.4e-01 1.2e+00 4.5e+01 4.7 5.5e+00 7.9e+00 417 2000_10_11 ssearch 1eje:A 0.8 2.6 -3.264626e+00 -2.354543e+00 1.6e+00 3.1e+00 9.4e+01 2 1.8e+01 2.6e+01 192 2000_06_19 ssearch 1ejf:A 1.2 2.0 -6.148992e+00 -4.399492e+00 9.1e-01 2.7e+00 7.9e+01 7.3 2.0e+01 2.8e+01 110 2000_06_28 ssearch 1ek9:C 1.1 0.7 -3.231742e+00 -1.343270e+00 2.4e-01 4.7e-01 4.5e+01 2.8 4.7e+00 6.9e+00 423 2000_09_13 ssearch 1eke:A 1.4 2.8 1.636834e+00 4.195540e+00 9.1e-01 1.8e+00 9.7e+01 10 1.1e+01 1.5e+01 219 2000_09_20 ssearch 1ekr:A 1.6 2.3 -4.324447e+00 2.132362e+00 0.0e+00 7.0e-01 9.8e+01 0.92 3.3e+01 3.6e+01 143 2000_12_13 ssearch 1ekt:A 0.3 1.6 -1.174615e+01 -1.150964e+01 0.0e+00 1.9e+00 9.8e+01 10 4.0e+01 3.8e+01 53 2001_01_24 ssearch 1emx:A 3.6 2.8 6.335305e+00 6.124129e+00 7.3e+01 8.3e+01 9.7e+01 0.0087 7.3e+01 7.7e+01 30 2000_12_20 ssearch 1eo1:A 0.3 1.2 -4.942542e+00 -4.690340e+00 2.4e+00 8.9e+00 9.8e+01 14 1.5e+01 1.9e+01 124 2000_09_08 ssearch 1eo6:A 1.1 0.7 -6.779684e+00 -4.504252e+00 8.6e-01 6.0e+00 7.8e+01 2.5 1.5e+01 2.0e+01 116 2000_07_27 ssearch 1eom:A 16.4 3.7 -1.504488e+00 1.181600e+01 5.3e+00 1.6e+01 9.5e+01 0.27 5.7e+01 6.4e+01 283 2000_08_30 ssearch 1es6:A 1.7 2.3 -5.761375e+00 -1.038436e+00 0.0e+00 3.8e-01 4.1e+01 0.58 1.1e+01 1.5e+01 260 2000_09_20 ssearch 1esm:D 3.4 2.8 -7.145777e+00 3.460428e-01 3.4e-01 1.3e+00 2.9e+01 9.2 8.1e+00 1.3e+01 297 2000_11_01 ssearch 1ev0:A 0.5 2.0 -1.053103e+01 -4.106049e+00 0.0e+00 1.2e+01 1.0e+02 8.3 4.1e+01 4.5e+01 58 2000_10_19 ssearch 1ev7:B 2.7 2.0 -3.179986e+00 -1.558965e+00 1.7e+00 3.8e+00 6.6e+01 10 8.5e+00 9.6e+00 293 2000_09_13 ssearch 1evs:A 18.4 4.1 5.517117e+00 1.761771e+01 6.3e+01 7.3e+01 9.2e+01 0.18 7.9e+01 8.3e+01 163 2001_05_02 ssearch 1ews:A 1.2 0.7 -2.035971e+01 -1.885618e+01 1.6e+01 3.1e+01 9.4e+01 4.6 4.7e+01 5.6e+01 32 2000_07_27 ssearch 1eww:A 2.0 0.7 -1.267049e+01 -6.707171e+00 5.6e+00 6.7e+00 5.3e+01 12 1.8e+01 2.7e+01 90 2000_07_26 ssearch 1exk:A 0.5 1.2 -8.602816e+00 -6.353083e+00 0.0e+00 0.0e+00 9.0e+01 0.12 1.6e+01 2.8e+01 79 2000_07_06 ssearch 1exz:D 1.4 1.6 -8.725714e+00 -3.232860e+00 8.1e-01 8.1e-01 5.6e+01 4.2 1.1e+01 1.9e+01 124 2000_10_18 ssearch 1ezf:A 0.6 2.0 -2.264050e+00 -1.340509e+00 1.2e+00 1.5e+00 7.0e+01 9.1 1.1e+01 1.2e+01 323 2000_09_20 ssearch 1ezj:A 2.9 3.9 8.896637e+00 8.530205e+00 8.8e-01 8.8e-01 9.9e+01 7.3 3.9e+01 4.6e+01 114 2000_07_12 ssearch 1f02:T 2.6 3.3 -9.254545e+00 5.759133e+00 6.1e+00 9.1e+00 1.0e+02 15 2.9e+01 3.3e+01 66 2001_05_16 ssearch 1f08:A 1.6 1.2 -4.183562e+00 -9.264273e-01 3.4e+00 8.1e+00 9.9e+01 19 1.7e+01 2.3e+01 148 2000_07_26 ssearch 1f0j:A 1.5 2.0 -1.761029e+00 -1.738812e+00 0.0e+00 1.1e+00 9.9e+01 0.97 1.1e+01 1.7e+01 351 2000_07_27 ssearch 1f0k:A 2.8 2.8 -1.821452e+00 9.178495e-01 5.7e-01 8.5e-01 8.9e+01 0.7 1.8e+01 2.5e+01 351 2001_01_10 ssearch 1f0z:A 0.3 1.6 -9.539016e+00 -9.174410e+00 1.5e+00 6.1e+00 9.7e+01 2.8 1.7e+01 3.5e+01 66 2000_06_28 ssearch 1f1z:A 1.7 2.8 -2.112903e+00 -1.416649e+00 0.0e+00 3.8e-01 9.1e+01 2.8 2.1e+01 2.4e+01 260 2001_02_01 ssearch 1f34:B 1.3 1.2 7.239090e+00 -1.407174e+00 1.4e+00 4.3e+00 8.6e+01 5.4 1.2e+01 2.8e+01 138 2001_08_15 ssearch 1f35:A 0.7 2.3 -4.548013e+00 -7.734506e-01 6.4e-01 6.4e-01 8.5e+01 7.3 1.7e+01 2.7e+01 157 2000_07_26 ssearch 1f37:A 1.7 2.3 -3.009087e+00 -1.200295e+00 4.6e+00 8.3e+00 9.9e+01 2.2 2.4e+01 3.8e+01 109 2000_10_11 ssearch 1f3u:A 1.1 1.6 -5.542387e+00 -4.826223e+00 8.5e-01 1.7e+00 9.3e+01 1.8 1.8e+01 2.3e+01 118 2000_10_11 ssearch 1f3u:B 1.9 2.0 -4.422041e+00 -2.139735e+00 7.2e-01 7.2e-01 9.9e+01 3.3 1.4e+01 1.9e+01 139 2001_06_20 ssearch 1f45:B 1.3 2.6 -6.032760e+00 1.485316e+01 9.0e+00 1.3e+01 7.1e+01 13 4.9e+01 5.2e+01 133 2001_06_13 ssearch 1f46:A 0.8 1.6 -4.388113e+00 -2.757752e+00 1.4e+00 2.9e+00 1.0e+02 6.4 1.2e+01 1.7e+01 139 2000_12_27 ssearch 1f53:A 1.0 1.2 -7.251690e+00 -5.720851e+00 1.2e+00 7.1e+00 1.0e+02 12 2.1e+01 3.2e+01 84 2000_12_27 ssearch 1f62:A 6.0 2.8 1.152851e+01 1.152852e+01 5.5e+01 6.7e+01 1.0e+02 0.22 7.5e+01 7.6e+01 51 2000_12_13 ssearch 1f6d:A 0.9 1.2 -2.373784e+00 -8.163963e-01 2.7e-01 1.4e+00 7.0e+01 3.1 1.2e+01 1.5e+01 366 2000_11_08 ssearch 1f6v:A 2.8 1.6 -4.826010e+00 -2.618056e+00 2.2e+00 7.7e+00 9.6e+01 7.9 3.3e+01 3.8e+01 91 2001_03_28 ssearch 1f75:B 3.8 1.2 -3.313227e+00 8.256483e-02 0.0e+00 9.4e-01 8.3e+01 9.3 1.1e+01 1.8e+01 212 2000_10_18 ssearch 1f81:A 0.3 1.2 -7.344482e+00 -6.936214e+00 0.0e+00 0.0e+00 9.5e+01 1.5 1.8e+01 2.2e+01 87 2000_07_26 ssearch 1f8x:A 0.9 1.2 -4.442547e+00 -2.414123e+00 1.3e+00 3.8e+00 8.8e+01 11 1.5e+01 2.0e+01 156 2000_09_20 ssearch 1f93:E 3.1 2.8 -7.613560e+00 -1.961641e+01 5.5e+01 7.4e+01 8.1e+01 13 5.8e+01 7.1e+01 31 2000_07_26 ssearch 1f94:A 7.2 1.2 -4.506018e-01 -9.238048e-01 4.0e+01 6.3e+01 9.2e+01 0.0074 4.9e+01 6.8e+01 63 2000_08_30 ssearch 1fa0:A 1.7 2.3 -1.483603e+00 -4.615548e-01 0.0e+00 2.0e-01 4.3e+01 9.5 2.8e+00 5.3e+00 509 2001_07_18 ssearch 1faz:A 2.1 2.8 3.926081e+00 3.591907e+00 2.5e+00 4.9e+00 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