#==================================================================== # Perl-RDB EVA:method.rdb=results of all ids for method=ssearch of type=threading # best values of first 5 # Copyright : Volker Eyrich & Burkhard Rost, CUBIC Columbia Univ, New York City # Email : rost@columbia.edu # WWW : http://cubic.bioc.columbia.edu/eva # Version : version 0.1: 2000_04_12 # # -------------------------------------------------------------------------------- # # Notation used : # # NOTATION BODY : # NOTATION date : date when added [yyyy_mm_dd] # NOTATION Target : identifier of target protein # NOTATION Method : abbreviation of prediction method (seq=sequence) # NOTATION Rank : rank of model in method prediction # NOTATION Template : identifier of template protein # NOTATION ModN% : percent of target residues in model # NOTATION TgtN : number of residues in target structure # NOTATION TmptN : number of residues in template structure # NOTATION TmptZ_CE : CE Z-score of a template chosen by a method # NOTATION TmptStrN_CE% : percent of target residues in CE alignment of template # : and target structures # NOTATION TmptRmsd_CE : rmsd (in Anstroms) of CE alignment of template and target structures # NOTATION ModStrN_CE% : percent of target residues in CE alignment of method model and # : target structure # NOTATION ModRmsd_CE : rmsd (in Anstroms) of CE alignment of method model and query structures # NOTATION ModZ_CE : CE Z-score of a method model # NOTATION NXA% : percent of target residues found within a distance of X Angstroms # : in CE structural alignment of model and target structure # NOTATION ALX% : percent of target residues found within a shift of X residues # : in CE structurel alignment of model and target structure # date Method Target -lnP_MMT Z_CE Q_LG1 Q_LG2 N3.5A_Gbl% N5A_Gbl% ModN% ServScore N3.5A_ext_CE% N5A_ext_CE% TgtN 2000_11_15 ssearch 1by6:A 0.4 0.7 -1.696667e+01 -1.696667e+01 2.8e+00 5.6e+00 1.0e+02 5.8 3.6e+01 4.2e+01 36 2000_07_19 ssearch 1c01:A 4.0 2.3 -8.107353e+00 -3.299805e+00 3.9e+00 7.9e+00 9.9e+01 3.8 3.0e+01 3.7e+01 76 2000_07_19 ssearch 1c55:A 5.4 3.9 2.963251e+01 2.293736e+01 9.0e+01 9.2e+01 9.2e+01 1.2e-06 8.8e+01 9.0e+01 40 2000_07_12 ssearch 1c8u:A 2.9 3.1 -2.832596e+00 4.785145e-01 7.0e-01 1.8e+00 7.2e+01 6.5 1.2e+01 1.7e+01 285 2000_12_04 ssearch 1ci6:A 8.2 5.0 -1.131111e+01 4.111886e+01 9.6e+01 9.6e+01 9.6e+01 0.03 8.8e+01 9.5e+01 56 2002_05_01 ssearch 1cix:A 2.8 2.6 1.229051e+00 7.248440e+00 3.4e+01 4.8e+01 8.4e+01 0.75 7.0e+01 7.7e+01 44 2001_02_28 ssearch 1cwy:A 2.0 2.8 -1.107380e+00 1.030308e+00 8.0e-01 1.8e+00 9.1e+01 3.5 8.0e+00 1.1e+01 500 2000_09_20 ssearch 1d1h:A 4.5 3.5 2.505112e+01 2.290388e+01 8.3e+01 8.3e+01 9.7e+01 0.15 8.3e+01 8.6e+01 35 2000_09_27 ssearch 1d2o:A 3.3 3.5 -6.429474e+00 4.717753e+00 1.0e+01 1.8e+01 5.1e+01 0.68 2.9e+01 3.6e+01 187 2000_06_21 ssearch 1d6b:A 5.8 4.1 3.121956e+01 3.121955e+01 7.1e+01 9.5e+01 1.0e+02 0.0001 8.6e+01 9.0e+01 42 2001_04_04 ssearch 1daq:A 3.7 2.3 -1.122582e+00 -7.157688e-01 5.6e+00 8.5e+00 1.0e+02 21 2.3e+01 3.2e+01 71 2001_02_21 ssearch 1dc1:A 2.4 3.1 -2.684612e+00 1.060172e+00 3.2e-01 3.2e+00 5.8e+01 5.2 2.0e+01 2.4e+01 310 2001_07_18 ssearch 1dcj:A 6.3 2.8 -6.323232e+00 -1.985812e-01 1.4e+01 2.1e+01 9.8e+01 1.3 4.4e+01 5.3e+01 81 2000_11_08 ssearch 1dd3:C 2.2 2.6 -1.537694e+01 -1.537698e+01 4.4e+01 6.6e+01 1.0e+02 48 5.6e+01 6.9e+01 32 2000_11_27 ssearch 1dh3:A 8.4 5.0 -1.110545e+01 4.700810e+01 1.0e+02 1.0e+02 1.0e+02 0.0036 1.0e+02 1.0e+02 55 2000_12_13 ssearch 1dkc:A 1.2 1.6 -1.607003e+01 -1.166163e+01 1.3e+01 1.8e+01 1.0e+02 0.93 3.4e+01 5.0e+01 38 2000_09_15 ssearch 1dl0:A 1.5 1.6 -1.829480e+01 -1.631895e+01 1.9e+01 4.3e+01 8.9e+01 0.17 3.8e+01 4.9e+01 37 2000_12_13 ssearch 1dl9:A 1.5 2.3 -3.065982e+00 -1.345933e+00 8.2e-01 2.5e+00 7.8e+01 2.5 1.1e+01 1.6e+01 243 2000_09_20 ssearch 1dly:A 2.4 2.6 -1.196576e+00 1.482736e+00 1.7e+00 5.0e+00 9.4e+01 1.4 1.9e+01 3.0e+01 121 2000_07_12 ssearch 1dov:A 2.1 3.1 -2.145896e+00 1.387767e+00 1.1e+00 1.7e+00 9.9e+01 4.8 1.5e+01 1.7e+01 181 2000_07_12 ssearch 1dow:B 0.6 1.6 -1.970323e+01 -1.934750e+01 9.7e+00 3.2e+01 1.0e+02 15 4.5e+01 5.2e+01 31 2001_04_04 ssearch 1dp3:A 3.1 3.1 -1.025692e+01 -1.907106e+00 9.1e+00 3.3e+01 1.0e+02 6.2 4.7e+01 5.3e+01 55 2000_11_10 ssearch 1dpu:A 3.4 3.1 -8.852174e+00 3.229848e+00 8.7e+00 2.3e+01 1.0e+02 3.6 3.6e+01 3.9e+01 69 2000_09_13 ssearch 1dqc:A 1.2 1.6 -8.436205e+00 -7.123615e+00 8.2e+00 1.2e+01 9.9e+01 0.98 3.0e+01 3.7e+01 73 2001_01_10 ssearch 1dqe:A 1.4 2.3 -5.663160e-01 4.031737e+00 2.2e+00 5.8e+00 7.4e+01 1.6 2.9e+01 3.7e+01 137 2000_07_06 ssearch 1dry:A 1.3 2.3 -1.639803e+00 -4.073675e-01 1.9e+00 3.8e+00 9.5e+01 6.6 1.6e+01 2.2e+01 316 2000_07_12 ssearch 1dtd:B 1.3 1.2 -1.017992e+01 -8.646878e+00 9.8e+00 1.3e+01 9.8e+01 2.4 2.6e+01 3.4e+01 61 2000_07_19 ssearch 1dvo:A 2.0 3.3 3.060984e+00 3.588987e+00 3.3e+00 4.6e+00 9.9e+01 14 1.7e+01 2.1e+01 152 2000_06_22 ssearch 1dw3:A 6.5 3.1 3.202344e-01 1.175756e+01 9.8e+00 1.9e+01 9.6e+01 2 5.3e+01 5.6e+01 112 2000_08_23 ssearch 1dw7:A 1.6 2.6 -6.766046e+00 -4.471411e+00 1.4e+00 7.0e+00 9.9e+01 23 3.1e+01 4.5e+01 71 2000_11_03 ssearch 1e0f:J 3.8 3.1 -4.571592e+00 -3.421133e+00 2.4e+01 3.6e+01 9.1e+01 0.19 4.5e+01 5.6e+01 55 2000_06_21 ssearch 1e0g:A 3.1 2.0 -3.355008e+00 1.737984e+00 2.3e+01 4.2e+01 1.0e+02 2.3 4.6e+01 5.0e+01 48 2000_06_21 ssearch 1e1d:A 2.5 2.6 3.171656e+00 -2.666915e-01 3.6e-01 1.1e+00 5.4e+01 1.5 7.2e+00 9.2e+00 553 2000_07_07 ssearch 1e2t:F 1.4 2.6 -1.193158e+00 2.529472e-01 1.1e+00 4.4e+00 9.4e+01 7.8 1.4e+01 2.0e+01 274 2000_12_03 ssearch 1e2x:A 6.6 3.9 2.842901e+00 6.242699e+00 1.4e+00 3.6e+00 8.7e+01 17 2.3e+01 3.2e+01 222 2001_07_12 ssearch 1e4s:A 5.2 3.9 -1.696667e+01 2.780877e+01 9.2e+01 9.7e+01 1.0e+02 0.0024 9.2e+01 9.7e+01 36 2001_07_12 ssearch 1e4t:A 4.7 3.9 1.685155e+01 1.676220e+01 7.6e+01 8.4e+01 1.0e+02 0.0048 8.4e+01 8.6e+01 37 2001_07_26 ssearch 1e5r:A 1.4 1.6 -4.427809e-01 -1.237027e+00 3.8e-01 7.7e-01 8.8e+01 2.2 1.0e+01 1.6e+01 260 2000_10_25 ssearch 1e68:A 1.5 2.8 -6.431174e+00 -2.858912e+00 8.6e+00 2.6e+01 1.0e+02 24 3.9e+01 4.3e+01 70 2000_11_03 ssearch 1e79:I 1.0 2.3 -1.011790e+01 -5.220118e+00 1.5e+01 3.0e+01 9.8e+01 35 4.9e+01 4.9e+01 47 2001_09_07 ssearch 1e8p:A 2.5 2.0 -1.282624e+01 -1.158704e+01 1.5e+01 2.6e+01 1.0e+02 5.8 3.5e+01 4.1e+01 46 2001_10_18 ssearch 1e9k:A 2.1 2.3 -1.606620e+01 -1.538859e+01 7.9e+00 1.6e+01 1.0e+02 3.2 5.3e+01 6.1e+01 38 2001_01_31 ssearch 1ee6:A 3.0 2.3 -2.964334e+00 2.752559e-01 5.1e-01 1.0e+00 9.7e+01 5.7 2.3e+01 2.4e+01 197 2000_08_03 ssearch 1eej:A 2.0 2.8 8.882479e-01 -1.800194e+00 4.2e+00 6.5e+00 9.8e+01 1.1 1.7e+01 2.2e+01 216 2001_02_21 ssearch 1ehk:C 4.7 4.1 3.909337e+01 4.005627e+01 9.1e+01 1.0e+02 1.0e+02 8.5 9.1e+01 9.7e+01 33 2000_11_17 ssearch 1ehx:A 1.4 2.6 9.800667e-01 5.279766e+00 6.4e+00 2.7e+01 9.3e+01 4.9 5.4e+01 6.2e+01 94 2000_11_03 ssearch 1eij:A 2.7 3.3 -7.657324e+00 -4.138031e+00 1.4e+00 4.2e+00 9.6e+01 22 2.9e+01 3.6e+01 72 2000_07_12 ssearch 1ej6:D 1.9 2.0 -3.226644e+00 -9.757760e-01 4.8e-01 1.2e+00 4.5e+01 4.7 8.6e+00 1.1e+01 417 2000_10_11 ssearch 1eje:A 1.3 2.6 -3.198833e+00 -2.181720e+00 1.6e+00 3.1e+00 9.5e+01 2 2.0e+01 2.6e+01 192 2000_06_19 ssearch 1ejf:A 2.6 2.6 -6.148992e+00 -1.583948e+00 4.5e+00 5.5e+00 8.3e+01 7.3 3.5e+01 4.4e+01 110 2000_06_28 ssearch 1ek9:C 1.5 2.8 2.336093e+00 1.818268e+00 2.4e-01 4.7e-01 5.3e+01 2.8 1.0e+01 1.2e+01 423 2000_09_13 ssearch 1eke:A 2.8 3.3 1.636834e+00 4.971299e+00 1.8e+00 3.7e+00 1.0e+02 10 1.9e+01 2.2e+01 219 2000_09_20 ssearch 1ekr:A 3.0 2.6 -4.266034e+00 2.132362e+00 0.0e+00 1.4e+00 1.0e+02 0.92 3.4e+01 3.9e+01 143 2000_12_13 ssearch 1ekt:A 0.5 1.6 -1.174615e+01 -1.121608e+01 1.9e+00 1.9e+00 9.8e+01 10 4.0e+01 4.0e+01 53 2001_01_24 ssearch 1emx:A 3.6 2.8 1.029484e+01 7.765384e+00 7.3e+01 8.7e+01 9.7e+01 0.0087 7.3e+01 8.7e+01 30 2000_12_20 ssearch 1eo1:A 2.5 2.8 -4.942542e+00 -1.606076e+00 4.0e+00 8.9e+00 9.8e+01 14 3.5e+01 4.2e+01 124 2000_09_08 ssearch 1eo6:A 2.9 0.7 -6.777421e+00 -4.458177e+00 8.6e-01 6.9e+00 7.8e+01 2.5 1.9e+01 2.2e+01 116 2000_07_27 ssearch 1eom:A 17.0 3.9 -1.504488e+00 1.235726e+01 1.1e+01 1.7e+01 9.5e+01 0.27 5.8e+01 6.4e+01 283 2000_08_30 ssearch 1es6:A 1.7 2.6 -2.598795e+00 -7.799748e-01 7.7e-01 1.5e+00 9.0e+01 0.58 1.2e+01 1.5e+01 260 2000_09_20 ssearch 1esm:D 3.4 2.8 -1.942858e+00 3.460428e-01 1.0e+00 2.7e+00 9.7e+01 9.2 1.7e+01 2.2e+01 297 2000_11_01 ssearch 1ev0:A 2.4 2.8 7.452310e+00 -3.671014e+00 1.7e+00 1.2e+01 1.0e+02 8.3 4.1e+01 5.0e+01 58 2000_10_19 ssearch 1ev7:B 2.7 2.0 -2.017308e+00 -1.072624e+00 1.7e+00 3.8e+00 1.0e+02 10 1.2e+01 1.5e+01 293 2000_09_13 ssearch 1evs:A 18.4 4.1 5.517117e+00 1.761771e+01 6.3e+01 7.3e+01 9.6e+01 0.18 7.9e+01 8.3e+01 163 2001_05_02 ssearch 1ews:A 2.7 2.6 -1.908734e+01 -1.870606e+01 1.6e+01 4.4e+01 1.0e+02 4.6 7.2e+01 7.2e+01 32 2000_07_27 ssearch 1eww:A 2.0 0.7 -6.874909e+00 -6.377792e+00 5.6e+00 6.7e+00 9.8e+01 12 1.9e+01 2.7e+01 90 2000_07_26 ssearch 1exk:A 0.6 1.2 -8.367122e+00 -6.353083e+00 1.3e+00 2.5e+00 9.2e+01 0.12 2.4e+01 3.2e+01 79 2000_07_06 ssearch 1exz:D 2.0 3.5 -8.483333e+00 7.848917e+00 8.1e-01 8.1e-01 5.8e+01 4.2 2.3e+01 2.4e+01 124 2000_10_18 ssearch 1ezf:A 3.3 3.1 2.296583e+00 2.795089e+00 1.2e+00 2.2e+00 9.8e+01 9.1 1.5e+01 1.9e+01 323 2000_09_20 ssearch 1ezj:A 3.3 3.9 8.896637e+00 8.530205e+00 8.8e-01 8.8e-01 9.9e+01 7.3 4.4e+01 4.9e+01 114 2000_07_12 ssearch 1f02:T 2.6 3.3 -9.254545e+00 1.156340e+01 6.1e+00 9.1e+00 1.0e+02 15 4.2e+01 4.2e+01 66 2001_05_16 ssearch 1f08:A 2.5 2.8 -4.127027e+00 -9.264273e-01 3.4e+00 8.1e+00 1.0e+02 19 1.7e+01 2.8e+01 148 2000_07_26 ssearch 1f0j:A 1.5 2.0 -2.416574e-01 2.774990e+00 1.1e+00 1.7e+00 9.9e+01 0.97 1.1e+01 1.7e+01 351 2000_07_27 ssearch 1f0k:A 5.1 3.1 -1.542895e+00 6.119276e+00 1.7e+00 4.8e+00 9.6e+01 0.7 3.3e+01 3.6e+01 351 2001_01_10 ssearch 1f0z:A 0.8 1.6 -9.242855e+00 -8.220259e+00 1.5e+00 6.1e+00 1.0e+02 2.8 1.8e+01 3.5e+01 66 2000_06_28 ssearch 1f1z:A 1.7 2.8 -2.050012e+00 -1.326657e+00 0.0e+00 3.8e-01 9.1e+01 2.8 2.1e+01 2.5e+01 260 2001_02_01 ssearch 1f34:B 1.3 1.2 7.239090e+00 -1.407174e+00 1.4e+00 5.1e+00 9.5e+01 5.4 2.5e+01 2.8e+01 138 2001_08_15 ssearch 1f35:A 1.0 2.3 -8.732573e-01 -7.734506e-01 6.4e-01 6.4e-01 9.8e+01 7.3 1.7e+01 2.7e+01 157 2000_07_26 ssearch 1f37:A 2.8 2.3 -2.435818e+00 5.502342e-01 4.6e+00 9.2e+00 9.9e+01 2.2 2.8e+01 3.9e+01 109 2000_10_11 ssearch 1f3u:A 1.2 2.0 -5.531852e+00 -3.992358e+00 8.5e-01 3.4e+00 9.3e+01 1.8 1.9e+01 2.4e+01 118 2000_10_11 ssearch 1f3u:B 1.9 2.0 -4.421800e+00 -2.139735e+00 1.4e+00 1.4e+00 9.9e+01 3.3 1.7e+01 2.4e+01 139 2001_06_20 ssearch 1f45:B 1.3 3.1 -4.698461e+00 1.485316e+01 9.0e+00 1.3e+01 9.8e+01 13 4.9e+01 5.2e+01 133 2001_06_13 ssearch 1f46:A 1.7 2.6 -3.228954e+00 -9.853258e-01 2.2e+00 7.2e+00 1.0e+02 6.4 1.7e+01 3.0e+01 139 2000_12_27 ssearch 1f53:A 1.0 1.6 -7.229070e+00 -5.720851e+00 2.4e+00 8.3e+00 1.0e+02 12 2.4e+01 3.3e+01 84 2000_12_27 ssearch 1f62:A 6.0 2.8 1.152851e+01 1.482945e+01 5.5e+01 6.7e+01 1.0e+02 0.22 7.5e+01 7.6e+01 51 2000_12_13 ssearch 1f6d:A 2.2 2.0 4.599678e+00 -4.236532e-01 5.5e-01 1.4e+00 7.0e+01 3.1 1.2e+01 1.5e+01 366 2000_11_08 ssearch 1f6v:A 3.1 1.6 -4.643391e+00 -2.299021e+00 4.4e+00 1.4e+01 9.6e+01 7.9 3.3e+01 4.1e+01 91 2001_03_28 ssearch 1f75:B 3.8 3.5 2.050431e-01 2.469206e+00 9.4e-01 7.1e+00 9.9e+01 9.3 2.2e+01 3.0e+01 212 2000_10_18 ssearch 1f81:A 1.8 1.6 -7.344482e+00 -6.120803e+00 2.3e+00 6.9e+00 9.5e+01 1.5 2.2e+01 3.0e+01 87 2000_07_26 ssearch 1f8x:A 3.1 2.6 -3.997978e+00 -1.148632e-01 1.3e+00 5.1e+00 9.7e+01 11 2.2e+01 2.4e+01 156 2000_09_20 ssearch 1f93:E 3.1 2.8 -7.613560e+00 -1.568388e+01 5.5e+01 7.4e+01 9.7e+01 13 5.8e+01 7.4e+01 31 2000_07_26 ssearch 1f94:A 7.9 2.6 2.292424e+01 2.376508e+01 5.9e+01 6.7e+01 9.7e+01 0.0074 7.5e+01 7.8e+01 63 2000_08_30 ssearch 1fa0:A 1.7 2.3 -1.471059e+00 -3.463623e-01 7.9e-01 1.6e+00 4.3e+01 9.5 6.9e+00 8.6e+00 509 2001_07_18 ssearch 1faz:A 2.1 2.8 3.926081e+00 3.591907e+00 5.7e+00 1.1e+01 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1.8e+01 280 2000_10_04 ssearch 1fho:A 2.1 2.6 -6.283876e+00 -3.069527e+00 2.5e+00 3.4e+00 8.2e+01 7.9 2.4e+01 2.9e+01 119 2001_03_21 ssearch 1fi4:A 1.5 2.6 -1.705230e+00 4.828323e-01 7.9e-01 1.8e+00 7.2e+01 0.21 7.3e+00 1.2e+01 382 2001_02_07 ssearch 1fiu:A 4.0 3.1 7.183525e-01 1.822377e+00 1.7e+00 2.8e+00 9.9e+01 14 1.4e+01 1.8e+01 286 2000_09_25 ssearch 1fjf:B 5.6 3.5 -4.330508e+00 2.366638e+00 1.3e+00 2.1e+00 5.3e+01 21 1.4e+01 1.6e+01 234 2000_09_25 ssearch 1fjf:C 3.4 3.1 -3.561814e+00 -2.477043e-02 4.9e-01 1.9e+00 6.7e+01 12 2.2e+01 2.6e+01 206 2000_09_25 ssearch 1fjf:I 2.0 2.6 -3.379318e+00 3.326934e+00 1.6e+00 4.7e+00 1.0e+02 5.7 2.4e+01 3.3e+01 127 2000_09_25 ssearch 1fjf:J 1.8 2.6 -5.992293e+00 -1.359601e+00 8.2e+00 1.0e+01 9.8e+01 1.2 3.8e+01 4.6e+01 98 2000_09_25 ssearch 1fjf:K 1.9 1.6 -5.357791e+00 -1.155348e+00 1.7e+00 3.4e+00 9.6e+01 3 1.8e+01 2.5e+01 119 2000_09_25 ssearch 1fjf:L 7.0 3.9 -4.827514e+00 9.221287e-01 8.1e-01 1.6e+00 9.9e+01 0.9 3.6e+01 4.8e+01 124 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