EVA: Detailed information for proteins added on: 2002_07_03

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2002_07_03	1ify	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	DNA BINDING PROTEIN	MOLECULE: UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG A; CHAIN: A; FRAGMENT: INTERNAL UBA DOMAIN; SYNONYM: HHR23A; ENGINEERED: YES	HOMO SAPIENS; HUMAN;	T.D.MUELLER,J.FEIGON
2002_07_03	1j58	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	METAL BINDING PROTEIN	MOLECULE: YVRK PROTEIN; CHAIN: A; SYNONYM: OXALATE DECARBOXYLASE; ENGINEERED: YES	BACILLUS SUBTILIS; BACTERIA;	R.ANAND,P.C.DORRESTEIN,C.KINSLAND,T.P.BEGLEY,S.E.EALICK
2002_07_03	1key	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	RNA BINDING PROTEIN	MOLECULE: TRANSLIN; CHAIN: A, B, C, D; SYNONYM: TB-RBP; ENGINEERED: YES	MUS MUSCULUS; MOUSE;	J.M.PASCAL,P.J.HART,N.B.HECHT,J.D.ROBERTUS
2002_07_03	1l3l	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSCRIPTION/DNA	MOLECULE: TRANSCRIPTIONAL ACTIVATOR PROTEIN TRAR; CHAIN: A, B, C, D; SYNONYM: QUORUM-SENSING TRANSCRIPTION FACTOR; ENGINEERED: YES; MOLECULE: 5'- D(GPAPTPGPTPGPCPAPGPAPTPCPTPGPCPAPCPAPTP C)-3'; CHAIN: E, F, G, H; ENGINEERED: YES	AGROBACTERIUM TUMEFACIENS; BACTERIA; SYNTHETIC: YES	R.ZHANG,T.PAPPAS,J.L.BRACE,P.C.MILLER,T.OULMASSOV, J.M.MOLYNEAUX,J.C.ANDERSON,J.K.BASHKIN,S.C.WINANS, A.JOACHIMIAK
2002_07_03	1ljo	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	UNKNOWN FUNCTION	MOLECULE: ARCHAEAL SM-LIKE PROTEIN AF-SM2; CHAIN: A; ENGINEERED: YES; MUTATION: YES	ARCHAEOGLOBUS FULGIDUS; GENE: AF0362;	I.TORO,J.BASQUIN,H.TEO-DREHER,D.SUCK

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field