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EVA summary for category sec (2)

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Local link to information about methods evaluated
All prediction results for category sec (i.e. secondary structure)
Explanations of measures for prediction accuracy

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About secondary structure methods evaluated

method		nprot	nweek	detailed results for method
ALL		174	26
JPRED		136	21	method/jpred.html
PHD		174	26	method/phd.html
PHDpsi		174	26	method/phdpsi.html
PROF		170	24	method/prof.html
PSIpred		171	25	method/psipred.html
PSSP		118	16	method/pssp.html
SSpro		148	22	method/sspro.html

Comparison of secondary structure methods (detail level 2)

Averages compiled over different subsets

The reason for compiling different averages is that not ALL proteins were predicted by all methods!
Only proteins with no significant sequence identity to previously known PDB proteins are reported, here.
The following subsets are given:

set 1: 111 proteins and 7 methods
set 2: 133 proteins and 6 methods
set 3: 170 proteins and 4 methods

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 1			Sorted alphabetically for identical ranks!		MORE SCORES
common 1	111	dssp	1	PROF	76.4	+/-0.8	71.7	+/-1.4	2.4	+/-1.4	0.36	+/-1.42	0.67	+/-1.42	0.62	+/-1.42	0.55	+/-1.42	84.7	+/-1.4
				PSIpred	76.6	+/-1.0	72.2	+/-1.4	2.4	+/-1.4	0.38	+/-1.42	0.66	+/-1.42	0.61	+/-1.42	0.56	+/-1.42	79.3	+/-1.4
				SSpro	77.1	+/-0.9	72.3	+/-1.4	2.3	+/-1.4	0.37	+/-1.42	0.69	+/-1.42	0.62	+/-1.42	0.57	+/-1.42	79.3	+/-1.4
common 1	111	dssp	2	JPRED	75.4	+/-0.8	69.1	+/-1.4	2.3	+/-1.4	0.34	+/-1.42	0.65	+/-1.42	0.58	+/-1.42	0.54	+/-1.42	73.9	+/-1.4
				PHDpsi	75.7	+/-0.8	70.8	+/-1.4	2.7	+/-1.4	0.34	+/-1.42	0.66	+/-1.42	0.58	+/-1.42	0.54	+/-1.42	78.4	+/-1.4
common 1	111	dssp	3	PHD	72.8	+/-0.9	68.7	+/-1.4	3.7	+/-1.4	0.30	+/-1.42	0.61	+/-1.42	0.58	+/-1.42	0.50	+/-1.42	78.4	+/-1.4
common 1	111	dssp	4	PSSP	65.3	+/-0.9	60.5	+/-1.4	5.8	+/-1.4	0.21	+/-1.42	0.47	+/-1.42	0.46	+/-1.42	0.40	+/-1.42	73.9	+/-1.4

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 2			Sorted alphabetically for identical ranks!		MORE SCORES
common 2	133	dssp	1	PHDpsi	75.4	+/-0.7	71.2	+/-1.1	2.7	+/-0.3	0.34	+/-0.01	0.66	+/-0.02	0.59	+/-0.02	0.54	+/-0.01	81.2	+/-3.4
				PROF	76.0	+/-0.8	72.0	+/-1.1	2.6	+/-0.3	0.36	+/-0.01	0.67	+/-0.02	0.63	+/-0.02	0.56	+/-0.01	82.7	+/-3.3
				PSIpred	75.9	+/-0.9	71.9	+/-1.2	2.8	+/-0.4	0.37	+/-0.01	0.65	+/-0.02	0.61	+/-0.02	0.55	+/-0.01	78.2	+/-3.6
				SSpro	76.1	+/-0.8	71.6	+/-1.2	2.7	+/-0.2	0.36	+/-0.01	0.67	+/-0.02	0.62	+/-0.02	0.56	+/-0.01	82.0	+/-3.3
common 2	133	dssp	2	JPRED	75.2	+/-0.8	69.8	+/-1.3	2.4	+/-0.3	0.34	+/-0.01	0.64	+/-0.02	0.59	+/-0.02	0.54	+/-0.01	77.4	+/-3.6
common 2	133	dssp	3	PHD	71.9	+/-0.9	68.2	+/-1.1	4.0	+/-0.3	0.29	+/-0.01	0.59	+/-0.02	0.57	+/-0.02	0.50	+/-0.01	79.7	+/-3.5

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 3			Sorted alphabetically for identical ranks!		MORE SCORES
common 3	170	dssp	1	PROF	76.2	+/-0.7	73.1	+/-1.0	2.5	+/-0.3	0.36	+/-0.01	0.67	+/-0.01	0.65	+/-0.02	0.56	+/-0.01	81.2	+/-3.0
				PSIpred	76.4	+/-0.8	72.7	+/-1.1	2.6	+/-0.3	0.37	+/-0.01	0.66	+/-0.02	0.63	+/-0.02	0.56	+/-0.01	77.1	+/-3.2
common 3	170	dssp	2	PHDpsi	75.1	+/-0.7	71.3	+/-1.0	2.8	+/-0.3	0.34	+/-0.01	0.65	+/-0.01	0.60	+/-0.02	0.53	+/-0.01	78.2	+/-3.2
common 3	170	dssp	3	PHD	72.2	+/-0.7	68.6	+/-0.9	3.8	+/-0.3	0.29	+/-0.01	0.59	+/-0.02	0.59	+/-0.02	0.49	+/-0.01	78.2	+/-3.2

All results

Last update: Oct 17, 2000
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva
WWW mirrors: ../doc/mirrors.html

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