EVA summary for category sec (2)

Contents

Method	Nprot	Nweek	Detailed results for method
ALL	1492	100	method/index.html

APSSP	1124	51	method/apssp.html
	480	9	method/apssp2.html
JPred	1114	91	method/jpred.html
PHD	1451	99	method/phd.html
PHDpsi	1451	99	method/phdpsi.html
PROF_king	1111	78	method/prof_king.html
PROFsec	1406	97	method/profsec.html
PSIpred	1266	92	method/psipred.html
PSSP	369	57	method/pssp.html
SAM-T99sec	476	81	method/samt99_sec.html
SSpro1	275	44	method/sspro1.html
SSpro2	1154	51	method/sspro2.html

Averages compiled over different subsets

The reason for compiling different averages is that not ALL proteins were predicted by all methods!
Only proteins with no significant sequence identity to previously known PDB proteins are reported, here.
The following subsets are given:
- set 1: 116 proteins and 9 methods (HTML - ASCII)
- set 2: 117 proteins and 8 methods (HTML - ASCII)
- set 3: 112 proteins and 8 methods (HTML - ASCII)
- set 4: 126 proteins and 7 methods (HTML - ASCII)
- set 5: 214 proteins and 6 methods (HTML - ASCII)
- set 6: 720 proteins and 4 methods (HTML - ASCII)
Detail level 2 (this file) as ASCII

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 1			Sorted alphabetically for identical ranks!		MORE SCORES
common 1	116	dssp	1	JPred	72.5	+/-1.1	67.0	+/-1.9	2.1	+/-0.3	0.31	+/-0.02	0.67	+/-0.03	0.59	+/-0.03	0.55	+/-0.02	83.6	+/-3.5
				PHDpsi	72.6	+/-0.9	67.6	+/-1.5	2.6	+/-0.3	0.30	+/-0.01	0.67	+/-0.03	0.59	+/-0.03	0.53	+/-0.02	83.6	+/-3.5
				PROF_king	71.9	+/-1.0	66.1	+/-1.7	2.6	+/-0.4	0.29	+/-0.01	0.70	+/-0.03	0.61	+/-0.03	0.55	+/-0.02	81.9	+/-3.6
				PROFsec	74.3	+/-0.9	69.7	+/-1.5	2.1	+/-0.3	0.33	+/-0.01	0.71	+/-0.03	0.63	+/-0.03	0.57	+/-0.02	82.8	+/-3.5
				PSIpred	74.0	+/-1.1	70.2	+/-1.7	2.3	+/-0.3	0.39	+/-0.04	0.73	+/-0.03	0.67	+/-0.03	0.60	+/-0.02	86.2	+/-3.2
				SAM-T99sec	73.7	+/-1.0	67.8	+/-1.6	1.9	+/-0.2	0.36	+/-0.04	0.69	+/-0.03	0.63	+/-0.03	0.55	+/-0.02	85.3	+/-3.3
				SSpro2	73.2	+/-1.0	66.7	+/-1.6	2.8	+/-0.3	0.36	+/-0.04	0.73	+/-0.03	0.63	+/-0.03	0.59	+/-0.02	81.9	+/-3.6
common 1	116	dssp	2	APSSP	68.4	+/-1.1	61.0	+/-1.7	4.5	+/-0.5	0.24	+/-0.02	0.70	+/-0.03	0.65	+/-0.03	0.62	+/-0.03	82.8	+/-3.5
				PHD	68.2	+/-1.1	63.2	+/-1.4	4.7	+/-0.5	0.25	+/-0.01	0.60	+/-0.03	0.51	+/-0.03	0.48	+/-0.02	79.3	+/-3.8

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 2			Sorted alphabetically for identical ranks!		MORE SCORES
common 2	117	dssp	1	JPred	72.6	+/-1.1	67.3	+/-1.9	2.1	+/-0.3	0.32	+/-0.02	0.67	+/-0.03	0.59	+/-0.03	0.55	+/-0.02	83.8	+/-3.4
				PHDpsi	72.7	+/-0.9	67.6	+/-1.4	2.6	+/-0.3	0.30	+/-0.01	0.67	+/-0.03	0.59	+/-0.03	0.53	+/-0.02	83.8	+/-3.4
				PROF_king	71.9	+/-1.0	66.1	+/-1.7	2.6	+/-0.4	0.29	+/-0.01	0.70	+/-0.03	0.61	+/-0.03	0.55	+/-0.02	82.1	+/-3.6
				PROFsec	74.3	+/-0.9	69.8	+/-1.5	2.1	+/-0.3	0.33	+/-0.01	0.71	+/-0.03	0.63	+/-0.03	0.57	+/-0.02	82.9	+/-3.5
				PSIpred	74.1	+/-1.1	70.1	+/-1.6	2.3	+/-0.3	0.39	+/-0.04	0.73	+/-0.03	0.67	+/-0.03	0.60	+/-0.02	86.3	+/-3.2
				SAM-T99sec	73.8	+/-1.0	67.9	+/-1.5	1.9	+/-0.2	0.36	+/-0.04	0.69	+/-0.03	0.63	+/-0.03	0.55	+/-0.02	85.5	+/-3.3
				SSpro2	73.2	+/-1.0	66.7	+/-1.6	2.8	+/-0.3	0.36	+/-0.04	0.73	+/-0.03	0.63	+/-0.03	0.59	+/-0.02	82.1	+/-3.6
common 2	117	dssp	2	PHD	68.3	+/-1.1	63.3	+/-1.4	4.7	+/-0.5	0.25	+/-0.01	0.60	+/-0.03	0.51	+/-0.03	0.48	+/-0.02	79.5	+/-3.7

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 3			Sorted alphabetically for identical ranks!		MORE SCORES
common 3	112	dssp	1	JPred	75.5	+/-0.9	68.4	+/-1.5	1.8	+/-0.3	0.34	+/-0.02	0.67	+/-0.02	0.59	+/-0.03	0.55	+/-0.02	79.5	+/-3.8
				PHDpsi	74.6	+/-0.9	68.4	+/-1.4	2.7	+/-0.3	0.24	+/-0.07	0.67	+/-0.02	0.59	+/-0.03	0.53	+/-0.02	81.2	+/-3.7
				PROF_king	74.3	+/-0.9	68.3	+/-1.5	2.6	+/-0.3	0.32	+/-0.01	0.70	+/-0.02	0.61	+/-0.03	0.55	+/-0.02	83.0	+/-3.6
				PROFsec	76.2	+/-0.9	71.5	+/-1.4	2.2	+/-0.2	0.34	+/-0.01	0.71	+/-0.02	0.63	+/-0.02	0.57	+/-0.02	82.1	+/-3.6
				PSIpred	76.2	+/-1.0	71.4	+/-1.5	2.2	+/-0.3	0.36	+/-0.02	0.73	+/-0.02	0.67	+/-0.03	0.60	+/-0.02	84.8	+/-3.4
				SAM-T99sec	76.2	+/-1.0	70.9	+/-1.4	1.7	+/-0.2	0.35	+/-0.02	0.69	+/-0.02	0.63	+/-0.02	0.55	+/-0.02	83.9	+/-3.5
				SSpro1	75.8	+/-1.0	68.8	+/-1.6	2.2	+/-0.3	0.35	+/-0.02	0.70	+/-0.02	0.61	+/-0.03	0.57	+/-0.02	80.4	+/-3.8
common 3	112	dssp	2	PHD	71.8	+/-1.0	66.9	+/-1.4	3.6	+/-0.4	0.20	+/-0.07	0.60	+/-0.02	0.51	+/-0.03	0.48	+/-0.02	81.2	+/-3.7

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 4			Sorted alphabetically for identical ranks!		MORE SCORES
common 4	126	dssp	1	JPred	75.5	+/-0.9	69.2	+/-1.4	1.7	+/-0.2	0.34	+/-0.01	0.67	+/-0.02	0.59	+/-0.02	0.55	+/-0.02	77.8	+/-3.7
				PHDpsi	74.8	+/-0.8	69.3	+/-1.3	2.6	+/-0.3	0.26	+/-0.07	0.67	+/-0.02	0.59	+/-0.02	0.53	+/-0.01	81.0	+/-3.5
				PROFsec	76.4	+/-0.8	72.0	+/-1.3	2.1	+/-0.2	0.35	+/-0.01	0.71	+/-0.02	0.63	+/-0.02	0.57	+/-0.01	82.5	+/-3.4
				PSIpred	76.4	+/-0.9	72.0	+/-1.4	2.2	+/-0.3	0.36	+/-0.01	0.73	+/-0.02	0.67	+/-0.03	0.60	+/-0.02	84.9	+/-3.2
				SAM-T99sec	76.4	+/-0.9	71.3	+/-1.3	1.7	+/-0.2	0.35	+/-0.01	0.69	+/-0.02	0.63	+/-0.02	0.55	+/-0.02	83.3	+/-3.3
				SSpro1	76.2	+/-0.9	69.7	+/-1.5	2.1	+/-0.3	0.35	+/-0.01	0.70	+/-0.02	0.61	+/-0.02	0.57	+/-0.02	81.0	+/-3.5
common 4	126	dssp	2	PHD	72.2	+/-0.9	67.8	+/-1.3	3.5	+/-0.3	0.22	+/-0.07	0.60	+/-0.02	0.51	+/-0.02	0.48	+/-0.01	81.0	+/-3.5

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 5			Sorted alphabetically for identical ranks!		MORE SCORES
common 5	214	dssp	1	PROFsec	76.3	+/-0.6	72.2	+/-0.9	2.3	+/-0.2	0.35	+/-0.01	0.71	+/-0.01	0.63	+/-0.02	0.57	+/-0.01	80.4	+/-2.7
				PSIpred	76.2	+/-0.7	71.6	+/-1.0	2.4	+/-0.2	0.36	+/-0.01	0.73	+/-0.02	0.67	+/-0.02	0.60	+/-0.01	81.3	+/-2.7
				SSpro1	76.0	+/-0.7	70.4	+/-1.0	2.4	+/-0.2	0.35	+/-0.01	0.70	+/-0.01	0.61	+/-0.02	0.57	+/-0.01	80.8	+/-2.7
common 5	214	dssp	2	JPred	74.6	+/-0.6	69.1	+/-1.0	2.3	+/-0.2	0.33	+/-0.01	0.67	+/-0.02	0.59	+/-0.02	0.55	+/-0.01	76.6	+/-2.9
				PHDpsi	74.4	+/-0.6	69.1	+/-0.9	3.0	+/-0.3	0.28	+/-0.04	0.67	+/-0.01	0.59	+/-0.02	0.53	+/-0.01	78.5	+/-2.8
common 5	214	dssp	3	PHD	71.7	+/-0.7	67.3	+/-0.9	4.0	+/-0.3	0.24	+/-0.04	0.60	+/-0.02	0.51	+/-0.02	0.48	+/-0.01	77.1	+/-2.9

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 6			Sorted alphabetically for identical ranks!		MORE SCORES
common 6	720	dssp	1	PSIpred	77.2	+/-0.4	73.3	+/-0.6	2.2	+/-0.1	0.40	+/-0.01	0.73	+/-0.01	0.67	+/-0.01	0.60	+/-0.01	83.6	+/-1.4
common 6	720	dssp	2	PROFsec	76.1	+/-0.4	72.3	+/-0.5	2.3	+/-0.1	0.36	+/-0.01	0.71	+/-0.01	0.63	+/-0.01	0.57	+/-0.01	81.9	+/-1.4
common 6	720	dssp	3	PHDpsi	73.7	+/-0.4	68.9	+/-0.5	2.9	+/-0.2	0.31	+/-0.01	0.67	+/-0.01	0.59	+/-0.01	0.53	+/-0.01	80.7	+/-1.5
common 6	720	dssp	4	PHD	71.2	+/-0.4	67.0	+/-0.5	4.1	+/-0.2	0.27	+/-0.01	0.60	+/-0.01	0.51	+/-0.01	0.48	+/-0.01	76.4	+/-1.6