Home   -  Secondary structure  Comparative modelling  Contacts  Threading   - search   - FTP   - Mirrors    -   Bottom

EVA summary for category sec (3)

Contents

About secondary structure prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 235 40 method/index.html
APSSP   00method/apssp.html
APSSP2   20537method/apssp2.html
JPred   16729method/jpred.html
PHD   16827method/phd.html
PHDpsi   16727method/phdpsi.html
PROF_king   17735method/prof_king.html
PROFsec   16827method/profsec.html
Prospect   13028method/prospect.html
PSIpred   21039method/psipred.html
PSSP   11method/pssp.html
SAM-T99sec   15338method/samt99_sec.html
SSpro1   11method/sspro1.html
SSpro2   23040method/sspro2.html

 


Comparison of secondary structure prediction methods (detail level 3)

Averages compiled over different subsets

 


Set 1

Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot sots rank method Q3 ERRsigQ3 Q3H%o ERRsigQ3H%o Q3H%p ERRsigQ3H%p Q3E%o ERRsigQ3E%o Q3E%p ERRsigQ3E%p Q3L%o ERRsigQ3L%o Q3L%p ERRsigQ3L%p sov ERRsigsov sovH ERRsigsovH sovE ERRsigsovE sovL ERRsigsovL BAD ERRsigBAD info ERRsiginfo corrH ERRsigcorrH corrE ERRsigcorrE corrL ERRsigcorrL class ERRsigclass contDH ERRsigcontDH contDE ERRsigcontDE
common 132dssp1APSSP276.1+/-1.678.9+/-5.877.1+/-5.959.1+/-5.773.8+/-7.078.2+/-2.670.7+/-2.370.6+/-2.875.8+/-4.178.7+/-3.770.4+/-2.92.3+/-0.50.38+/-0.030.66+/-0.040.58+/-0.050.53+/-0.0390.6+/-5.26.6+/-1.16.1+/-1.0
JPred73.6+/-1.770.6+/-6.181.3+/-6.655.9+/-5.373.1+/-7.080.9+/-2.864.9+/-2.670.6+/-2.871.7+/-4.977.9+/-3.768.9+/-2.91.7+/-0.40.33+/-0.030.64+/-0.040.56+/-0.050.51+/-0.0378.1+/-7.47.2+/-1.77.2+/-1.4
PHDpsi75.3+/-1.975.9+/-6.477.0+/-6.361.7+/-6.369.6+/-6.776.3+/-2.770.3+/-2.870.2+/-2.972.8+/-4.877.3+/-4.567.0+/-2.91.6+/-0.40.36+/-0.030.64+/-0.040.56+/-0.050.49+/-0.0390.6+/-5.26.8+/-1.06.7+/-1.6
PROF_king73.8+/-1.972.0+/-6.682.0+/-7.367.2+/-6.663.2+/-6.376.4+/-2.768.9+/-2.670.3+/-3.268.9+/-5.578.3+/-4.669.3+/-3.13.3+/-1.00.34+/-0.030.65+/-0.050.55+/-0.050.50+/-0.0378.1+/-7.48.2+/-1.46.6+/-1.4
PROFsec77.5+/-1.678.0+/-6.680.4+/-6.769.4+/-6.471.2+/-6.775.5+/-2.673.3+/-2.475.3+/-2.675.8+/-4.982.5+/-3.570.4+/-2.91.7+/-0.40.39+/-0.030.68+/-0.040.62+/-0.040.53+/-0.0387.5+/-5.96.1+/-1.24.2+/-0.9
Prospect73.5+/-1.576.5+/-6.075.8+/-6.456.4+/-5.771.4+/-6.976.8+/-2.866.7+/-2.369.6+/-2.875.1+/-4.775.9+/-4.166.9+/-2.62.3+/-0.50.33+/-0.030.63+/-0.050.55+/-0.050.49+/-0.0378.1+/-7.46.1+/-0.98.0+/-1.4
PSIpred77.6+/-1.881.6+/-6.078.1+/-6.164.9+/-6.174.3+/-7.177.6+/-2.773.2+/-2.573.3+/-2.778.9+/-3.978.9+/-3.769.5+/-3.02.0+/-0.60.41+/-0.030.68+/-0.040.62+/-0.040.55+/-0.0384.4+/-6.55.0+/-1.16.0+/-1.1
SAM-T99sec76.8+/-1.683.9+/-5.976.0+/-5.762.6+/-5.975.3+/-7.075.2+/-3.272.0+/-2.371.2+/-2.877.6+/-3.678.1+/-3.968.7+/-3.21.6+/-0.50.39+/-0.030.68+/-0.040.61+/-0.040.52+/-0.0384.4+/-6.55.6+/-1.36.0+/-1.1
SSpro275.8+/-1.580.8+/-6.577.7+/-6.161.5+/-6.072.6+/-6.977.3+/-2.670.6+/-2.569.6+/-2.273.0+/-4.577.0+/-4.170.0+/-2.72.4+/-0.40.37+/-0.030.67+/-0.040.58+/-0.050.53+/-0.0371.9+/-8.16.3+/-1.16.8+/-1.4
common 132dssp2PHD70.6+/-2.473.5+/-7.374.2+/-6.659.1+/-6.264.9+/-6.572.4+/-3.067.9+/-3.064.8+/-3.065.9+/-5.574.3+/-4.462.4+/-3.04.1+/-1.30.31+/-0.030.60+/-0.050.51+/-0.050.46+/-0.0384.4+/-6.59.6+/-1.69.2+/-1.9

 


Set 2

Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot sots rank method Q3 ERRsigQ3 Q3H%o ERRsigQ3H%o Q3H%p ERRsigQ3H%p Q3E%o ERRsigQ3E%o Q3E%p ERRsigQ3E%p Q3L%o ERRsigQ3L%o Q3L%p ERRsigQ3L%p sov ERRsigsov sovH ERRsigsovH sovE ERRsigsovE sovL ERRsigsovL BAD ERRsigBAD info ERRsiginfo corrH ERRsigcorrH corrE ERRsigcorrE corrL ERRsigcorrL class ERRsigclass contDH ERRsigcontDH contDE ERRsigcontDE
common 256dssp1JPred72.3+/-1.570.6+/-5.281.3+/-5.855.9+/-4.673.1+/-5.781.5+/-2.066.1+/-2.066.9+/-2.663.4+/-4.574.9+/-3.565.5+/-2.61.6+/-0.30.31+/-0.020.64+/-0.040.56+/-0.040.51+/-0.0382.1+/-5.27.9+/-1.57.1+/-1.0
PHDpsi74.1+/-1.475.9+/-5.077.0+/-4.961.7+/-5.069.6+/-5.273.1+/-2.371.3+/-2.067.2+/-2.466.4+/-4.177.1+/-3.463.4+/-2.51.7+/-0.40.32+/-0.020.64+/-0.040.56+/-0.040.49+/-0.0389.3+/-4.27.1+/-0.85.9+/-1.0
PROF_king72.9+/-1.472.0+/-5.282.0+/-5.767.2+/-5.263.2+/-5.075.0+/-2.069.6+/-1.966.9+/-2.661.7+/-4.578.7+/-3.565.6+/-2.62.8+/-0.60.31+/-0.020.65+/-0.040.55+/-0.040.50+/-0.0382.1+/-5.27.8+/-1.07.3+/-1.1
PROFsec76.5+/-1.378.0+/-5.380.4+/-5.469.4+/-5.271.2+/-5.373.9+/-2.274.3+/-1.971.8+/-2.468.6+/-4.382.9+/-2.867.3+/-2.61.6+/-0.30.36+/-0.030.68+/-0.040.62+/-0.030.53+/-0.0389.3+/-4.26.6+/-0.94.5+/-0.7
PSIpred75.7+/-1.681.6+/-4.778.1+/-4.664.9+/-5.274.3+/-5.776.5+/-2.073.3+/-2.069.7+/-2.573.8+/-3.577.2+/-3.565.6+/-2.72.1+/-0.40.38+/-0.030.68+/-0.040.62+/-0.040.55+/-0.0383.9+/-5.06.1+/-1.06.1+/-0.8
SAM-T99sec74.7+/-1.583.9+/-4.876.0+/-4.462.6+/-4.875.3+/-5.672.3+/-2.672.2+/-1.967.2+/-2.570.5+/-3.677.1+/-3.264.1+/-2.71.7+/-0.30.35+/-0.030.68+/-0.040.61+/-0.040.52+/-0.0385.7+/-4.76.5+/-1.05.7+/-0.8
SSpro274.7+/-1.480.8+/-5.177.7+/-4.761.5+/-4.872.6+/-5.475.5+/-2.071.9+/-1.967.7+/-2.368.2+/-4.177.6+/-3.366.4+/-2.52.4+/-0.30.35+/-0.020.67+/-0.040.58+/-0.040.53+/-0.0376.8+/-5.76.5+/-0.86.4+/-0.9
common 256dssp2PHD70.2+/-1.673.5+/-5.674.2+/-5.259.1+/-4.864.9+/-4.969.8+/-2.569.4+/-2.162.8+/-2.359.8+/-4.575.1+/-3.459.6+/-2.43.9+/-0.80.28+/-0.020.60+/-0.040.51+/-0.040.46+/-0.0282.1+/-5.29.5+/-1.18.2+/-1.3

 


Set 3

Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot sots rank method Q3 ERRsigQ3 Q3H%o ERRsigQ3H%o Q3H%p ERRsigQ3H%p Q3E%o ERRsigQ3E%o Q3E%p ERRsigQ3E%p Q3L%o ERRsigQ3L%o Q3L%p ERRsigQ3L%p sov ERRsigsov sovH ERRsigsovH sovE ERRsigsovE sovL ERRsigsovL BAD ERRsigBAD info ERRsiginfo corrH ERRsigcorrH corrE ERRsigcorrE corrL ERRsigcorrL class ERRsigclass contDH ERRsigcontDH contDE ERRsigcontDE
common 356dssp1JPred72.3+/-1.570.6+/-5.281.3+/-5.855.9+/-4.673.1+/-5.781.5+/-2.066.1+/-2.066.9+/-2.663.4+/-4.574.9+/-3.565.5+/-2.61.6+/-0.30.31+/-0.020.64+/-0.040.56+/-0.040.51+/-0.0382.1+/-5.27.9+/-1.57.1+/-1.0
PHDpsi74.1+/-1.475.9+/-5.077.0+/-4.961.7+/-5.069.6+/-5.273.1+/-2.371.3+/-2.067.2+/-2.466.4+/-4.177.1+/-3.463.4+/-2.51.7+/-0.40.32+/-0.020.64+/-0.040.56+/-0.040.49+/-0.0389.3+/-4.27.1+/-0.85.9+/-1.0
PROF_king72.9+/-1.472.0+/-5.282.0+/-5.767.2+/-5.263.2+/-5.075.0+/-2.069.6+/-1.966.9+/-2.661.7+/-4.578.7+/-3.565.6+/-2.62.8+/-0.60.31+/-0.020.65+/-0.040.55+/-0.040.50+/-0.0382.1+/-5.27.8+/-1.07.3+/-1.1
PROFsec76.5+/-1.378.0+/-5.380.4+/-5.469.4+/-5.271.2+/-5.373.9+/-2.274.3+/-1.971.8+/-2.468.6+/-4.382.9+/-2.867.3+/-2.61.6+/-0.30.36+/-0.030.68+/-0.040.62+/-0.030.53+/-0.0389.3+/-4.26.6+/-0.94.5+/-0.7
PSIpred75.7+/-1.681.6+/-4.778.1+/-4.664.9+/-5.274.3+/-5.776.5+/-2.073.3+/-2.069.7+/-2.573.8+/-3.577.2+/-3.565.6+/-2.72.1+/-0.40.38+/-0.030.68+/-0.040.62+/-0.040.55+/-0.0383.9+/-5.06.1+/-1.06.1+/-0.8
SAM-T99sec74.7+/-1.583.9+/-4.876.0+/-4.462.6+/-4.875.3+/-5.672.3+/-2.672.2+/-1.967.2+/-2.570.5+/-3.677.1+/-3.264.1+/-2.71.7+/-0.30.35+/-0.030.68+/-0.040.61+/-0.040.52+/-0.0385.7+/-4.76.5+/-1.05.7+/-0.8
common 356dssp2PHD70.2+/-1.673.5+/-5.674.2+/-5.259.1+/-4.864.9+/-4.969.8+/-2.569.4+/-2.162.8+/-2.359.8+/-4.575.1+/-3.459.6+/-2.43.9+/-0.80.28+/-0.020.60+/-0.040.51+/-0.040.46+/-0.0282.1+/-5.29.5+/-1.18.2+/-1.3

 


Set 4

Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot sots rank method Q3 ERRsigQ3 Q3H%o ERRsigQ3H%o Q3H%p ERRsigQ3H%p Q3E%o ERRsigQ3E%o Q3E%p ERRsigQ3E%p Q3L%o ERRsigQ3L%o Q3L%p ERRsigQ3L%p sov ERRsigsov sovH ERRsigsovH sovE ERRsigsovE sovL ERRsigsovL BAD ERRsigBAD info ERRsiginfo corrH ERRsigcorrH corrE ERRsigcorrE corrL ERRsigcorrL class ERRsigclass contDH ERRsigcontDH contDE ERRsigcontDE
common 481dssp1JPred72.6+/-1.270.6+/-4.281.3+/-4.755.9+/-3.673.1+/-4.682.3+/-1.566.6+/-1.667.6+/-1.962.6+/-3.873.5+/-2.767.6+/-2.02.3+/-0.40.32+/-0.020.64+/-0.030.56+/-0.030.51+/-0.0282.7+/-4.28.5+/-1.27.3+/-0.8
PHDpsi73.9+/-1.275.9+/-4.377.0+/-4.361.7+/-4.069.6+/-4.273.9+/-1.971.9+/-1.667.9+/-1.965.0+/-3.776.1+/-2.764.1+/-2.02.3+/-0.50.33+/-0.020.64+/-0.030.56+/-0.030.49+/-0.0285.2+/-4.07.6+/-0.86.9+/-0.9
PROFsec76.2+/-1.278.0+/-4.480.4+/-4.469.4+/-4.271.2+/-4.274.1+/-1.874.1+/-1.571.9+/-1.967.9+/-3.881.7+/-2.366.4+/-2.12.0+/-0.50.37+/-0.020.68+/-0.030.62+/-0.030.53+/-0.0288.9+/-3.56.8+/-0.85.8+/-0.8
PSIpred75.5+/-1.481.6+/-3.878.1+/-3.864.9+/-4.174.3+/-4.675.7+/-1.773.6+/-1.671.0+/-2.073.5+/-3.277.1+/-2.867.2+/-2.12.4+/-0.40.37+/-0.020.68+/-0.030.62+/-0.030.55+/-0.0282.7+/-4.26.5+/-0.85.7+/-0.7
SAM-T99sec75.0+/-1.283.9+/-4.076.0+/-3.762.6+/-3.975.3+/-4.572.0+/-2.271.7+/-1.869.0+/-1.970.5+/-3.276.5+/-2.763.8+/-2.32.1+/-0.40.35+/-0.020.68+/-0.040.61+/-0.030.52+/-0.0287.7+/-3.76.2+/-0.76.0+/-0.7
common 481dssp2PHD70.1+/-1.573.5+/-4.674.2+/-4.359.1+/-3.964.9+/-4.071.0+/-2.070.4+/-1.764.6+/-1.960.2+/-3.973.8+/-2.862.1+/-2.04.7+/-0.90.29+/-0.020.60+/-0.040.51+/-0.030.46+/-0.0281.5+/-4.39.5+/-1.18.0+/-1.0

 


Set 5

Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot sots rank method Q3 ERRsigQ3 Q3H%o ERRsigQ3H%o Q3H%p ERRsigQ3H%p Q3E%o ERRsigQ3E%o Q3E%p ERRsigQ3E%p Q3L%o ERRsigQ3L%o Q3L%p ERRsigQ3L%p sov ERRsigsov sovH ERRsigsovH sovE ERRsigsovE sovL ERRsigsovL BAD ERRsigBAD info ERRsiginfo corrH ERRsigcorrH corrE ERRsigcorrE corrL ERRsigcorrL class ERRsigclass contDH ERRsigcontDH contDE ERRsigcontDE
common 5101dssp1PROFsec75.0+/-1.178.0+/-4.080.4+/-4.169.4+/-3.871.2+/-3.874.0+/-1.573.7+/-1.371.1+/-1.769.5+/-3.478.9+/-2.366.4+/-1.82.5+/-0.50.35+/-0.020.68+/-0.030.62+/-0.030.53+/-0.0287.1+/-3.37.1+/-0.86.3+/-0.8
PSIpred75.1+/-1.381.6+/-3.678.1+/-3.664.9+/-3.674.3+/-4.175.5+/-1.573.9+/-1.471.1+/-1.874.8+/-2.875.5+/-2.668.1+/-1.92.6+/-0.40.37+/-0.020.68+/-0.030.62+/-0.030.55+/-0.0283.2+/-3.76.7+/-0.86.0+/-0.6
SAM-T99sec74.2+/-1.183.9+/-3.876.0+/-3.562.6+/-3.575.3+/-4.071.7+/-1.972.1+/-1.568.9+/-1.771.6+/-2.974.4+/-2.664.3+/-2.02.6+/-0.40.34+/-0.020.68+/-0.030.61+/-0.030.52+/-0.0288.1+/-3.26.8+/-0.76.4+/-0.7
common 5101dssp2PHDpsi72.5+/-1.275.9+/-3.977.0+/-3.961.7+/-3.569.6+/-3.873.1+/-1.770.9+/-1.467.2+/-1.766.5+/-3.373.5+/-2.663.7+/-1.72.7+/-0.50.32+/-0.020.64+/-0.030.56+/-0.030.49+/-0.0284.2+/-3.78.3+/-0.87.5+/-0.9
common 5101dssp3PHD69.3+/-1.373.5+/-4.174.2+/-3.959.1+/-3.464.9+/-3.670.7+/-1.769.9+/-1.564.7+/-1.762.7+/-3.471.5+/-2.662.4+/-1.74.8+/-0.80.28+/-0.020.60+/-0.030.51+/-0.030.46+/-0.0281.2+/-3.99.9+/-1.08.1+/-0.9

 


Set 6

Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot sots rank method Q3 ERRsigQ3 Q3H%o ERRsigQ3H%o Q3H%p ERRsigQ3H%p Q3E%o ERRsigQ3E%o Q3E%p ERRsigQ3E%p Q3L%o ERRsigQ3L%o Q3L%p ERRsigQ3L%p sov ERRsigsov sovH ERRsigsovH sovE ERRsigsovE sovL ERRsigsovL BAD ERRsigBAD info ERRsiginfo corrH ERRsigcorrH corrE ERRsigcorrE corrL ERRsigcorrL class ERRsigclass contDH ERRsigcontDH contDE ERRsigcontDE
common 6163dssp1PROFsec74.8+/-1.078.0+/-2.980.4+/-3.069.4+/-3.071.2+/-3.173.9+/-1.272.6+/-1.071.7+/-1.369.2+/-2.677.1+/-1.966.9+/-1.42.7+/-0.40.35+/-0.010.68+/-0.020.62+/-0.020.53+/-0.0285.9+/-2.77.0+/-0.66.2+/-0.6
PSIpred75.1+/-1.081.6+/-2.678.1+/-2.664.9+/-2.874.3+/-3.275.3+/-1.173.3+/-1.172.3+/-1.474.0+/-2.275.6+/-2.069.0+/-1.42.8+/-0.30.37+/-0.010.68+/-0.020.62+/-0.020.55+/-0.0283.4+/-2.96.6+/-0.66.0+/-0.5
common 6163dssp2PHDpsi72.0+/-1.075.9+/-2.977.0+/-2.961.7+/-2.869.6+/-3.172.7+/-1.369.7+/-1.167.8+/-1.465.5+/-2.572.3+/-2.264.6+/-1.33.0+/-0.40.32+/-0.010.64+/-0.020.56+/-0.020.49+/-0.0281.6+/-3.08.1+/-0.67.2+/-0.7
common 6163dssp3PHD69.3+/-1.173.5+/-2.974.2+/-2.859.1+/-2.764.9+/-2.970.4+/-1.368.7+/-1.165.5+/-1.462.8+/-2.570.3+/-2.263.0+/-1.34.6+/-0.60.28+/-0.010.60+/-0.020.51+/-0.020.46+/-0.0178.5+/-3.29.0+/-0.77.8+/-0.7

Home   -   Secondary structure  Comparative modelling  Contacts  Threading   - search   - FTP   - Mirrors    -   Top