EVA summary for category sec (2)

Contents

Method	Nprot	Nweek	Detailed results for method
ALL	246	44	method/index.html

APSSP	0	0	method/apssp.html
APSSP2	216	41	method/apssp2.html
JPred	167	29	method/jpred.html
PHD	179	31	method/phd.html
PHDpsi	177	31	method/phdpsi.html
PROF_king	188	39	method/prof_king.html
PROFsec	179	31	method/profsec.html
Prospect	139	31	method/prospect.html
PSIpred	217	42	method/psipred.html
SAM-T99sec	158	40	method/samt99_sec.html
SSpro2	241	44	method/sspro2.html

Averages compiled over different subsets

The reason for compiling different averages is that not ALL proteins were predicted by all methods!
Only proteins with no significant sequence identity to previously known PDB proteins are reported, here.
The following subsets are given:
- set 1: 31 proteins and 10 methods (HTML - ASCII)
- set 2: 55 proteins and 8 methods (HTML - ASCII)
- set 3: 55 proteins and 7 methods (HTML - ASCII)
- set 4: 80 proteins and 6 methods (HTML - ASCII)
- set 5: 105 proteins and 5 methods (HTML - ASCII)
- set 6: 168 proteins and 4 methods (HTML - ASCII)
Detail level 2 (this file) as ASCII

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 1			Sorted alphabetically for identical ranks!		MORE SCORES
common 1	31	dssp	1	APSSP2	76.7	+/-1.5	71.4	+/-2.8	2.2	+/-0.5	0.39	+/-0.03	0.66	+/-0.04	0.58	+/-0.05	0.53	+/-0.03	90.3	+/-5.4
				JPred	73.3	+/-1.7	70.3	+/-2.9	1.7	+/-0.5	0.33	+/-0.03	0.64	+/-0.04	0.56	+/-0.05	0.51	+/-0.03	77.4	+/-7.6
				PHDpsi	75.1	+/-1.9	69.7	+/-2.9	1.6	+/-0.4	0.36	+/-0.03	0.64	+/-0.04	0.56	+/-0.05	0.50	+/-0.03	93.5	+/-4.5
				PROF_king	73.6	+/-1.9	69.8	+/-3.3	3.4	+/-1.0	0.33	+/-0.03	0.66	+/-0.05	0.56	+/-0.05	0.51	+/-0.03	80.6	+/-7.2
				PROFsec	77.4	+/-1.6	74.8	+/-2.7	1.8	+/-0.4	0.39	+/-0.03	0.68	+/-0.04	0.62	+/-0.04	0.54	+/-0.03	90.3	+/-5.4
				Prospect	73.6	+/-1.6	69.8	+/-2.9	2.4	+/-0.5	0.33	+/-0.03	0.63	+/-0.05	0.55	+/-0.05	0.50	+/-0.03	80.6	+/-7.2
				PSIpred	77.8	+/-1.9	73.6	+/-2.7	2.1	+/-0.6	0.41	+/-0.03	0.68	+/-0.04	0.62	+/-0.05	0.55	+/-0.03	87.1	+/-6.1
				SAM-T99sec	76.7	+/-1.7	71.1	+/-2.9	1.7	+/-0.5	0.39	+/-0.03	0.68	+/-0.04	0.61	+/-0.05	0.53	+/-0.03	87.1	+/-6.1
				SSpro2	75.7	+/-1.6	69.1	+/-2.2	2.4	+/-0.4	0.37	+/-0.03	0.68	+/-0.04	0.59	+/-0.05	0.53	+/-0.03	74.2	+/-8.0
common 1	31	dssp	2	PHD	70.4	+/-2.4	64.5	+/-3.1	4.2	+/-1.4	0.31	+/-0.03	0.61	+/-0.06	0.52	+/-0.06	0.47	+/-0.03	83.9	+/-6.7

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 2			Sorted alphabetically for identical ranks!		MORE SCORES
common 2	55	dssp	1	JPred	72.0	+/-1.5	66.7	+/-2.7	1.6	+/-0.3	0.31	+/-0.02	0.64	+/-0.04	0.56	+/-0.04	0.51	+/-0.03	81.8	+/-5.2
				PHDpsi	73.9	+/-1.4	66.9	+/-2.4	1.7	+/-0.4	0.32	+/-0.02	0.64	+/-0.04	0.56	+/-0.04	0.50	+/-0.03	90.9	+/-3.9
				PROF_king	72.8	+/-1.4	66.5	+/-2.6	2.8	+/-0.6	0.31	+/-0.02	0.66	+/-0.04	0.56	+/-0.04	0.51	+/-0.03	83.6	+/-5.0
				PROFsec	76.4	+/-1.3	71.5	+/-2.4	1.6	+/-0.3	0.36	+/-0.03	0.68	+/-0.04	0.62	+/-0.03	0.54	+/-0.03	90.9	+/-3.9
				PSIpred	75.8	+/-1.6	69.8	+/-2.5	2.1	+/-0.4	0.38	+/-0.03	0.68	+/-0.04	0.62	+/-0.04	0.55	+/-0.03	85.5	+/-4.8
				SAM-T99sec	74.6	+/-1.5	67.1	+/-2.5	1.7	+/-0.3	0.35	+/-0.03	0.68	+/-0.04	0.61	+/-0.04	0.53	+/-0.03	87.3	+/-4.5
				SSpro2	74.6	+/-1.4	67.4	+/-2.3	2.5	+/-0.3	0.35	+/-0.03	0.68	+/-0.04	0.59	+/-0.04	0.53	+/-0.03	78.2	+/-5.6
common 2	55	dssp	2	PHD	70.1	+/-1.6	62.6	+/-2.3	3.9	+/-0.8	0.27	+/-0.02	0.61	+/-0.04	0.52	+/-0.04	0.47	+/-0.02	81.8	+/-5.2

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 3			Sorted alphabetically for identical ranks!		MORE SCORES
common 3	55	dssp	1	JPred	72.0	+/-1.5	66.7	+/-2.7	1.6	+/-0.3	0.31	+/-0.02	0.64	+/-0.04	0.56	+/-0.04	0.51	+/-0.03	81.8	+/-5.2
				PHDpsi	73.9	+/-1.4	66.9	+/-2.4	1.7	+/-0.4	0.32	+/-0.02	0.64	+/-0.04	0.56	+/-0.04	0.50	+/-0.03	90.9	+/-3.9
				PROF_king	72.8	+/-1.4	66.5	+/-2.6	2.8	+/-0.6	0.31	+/-0.02	0.66	+/-0.04	0.56	+/-0.04	0.51	+/-0.03	83.6	+/-5.0
				PROFsec	76.4	+/-1.3	71.5	+/-2.4	1.6	+/-0.3	0.36	+/-0.03	0.68	+/-0.04	0.62	+/-0.03	0.54	+/-0.03	90.9	+/-3.9
				PSIpred	75.8	+/-1.6	69.8	+/-2.5	2.1	+/-0.4	0.38	+/-0.03	0.68	+/-0.04	0.62	+/-0.04	0.55	+/-0.03	85.5	+/-4.8
				SAM-T99sec	74.6	+/-1.5	67.1	+/-2.5	1.7	+/-0.3	0.35	+/-0.03	0.68	+/-0.04	0.61	+/-0.04	0.53	+/-0.03	87.3	+/-4.5
common 3	55	dssp	2	PHD	70.1	+/-1.6	62.6	+/-2.3	3.9	+/-0.8	0.27	+/-0.02	0.61	+/-0.04	0.52	+/-0.04	0.47	+/-0.02	81.8	+/-5.2

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 4			Sorted alphabetically for identical ranks!		MORE SCORES
common 4	80	dssp	1	JPred	72.5	+/-1.2	67.5	+/-2.0	2.3	+/-0.4	0.32	+/-0.02	0.64	+/-0.03	0.56	+/-0.03	0.51	+/-0.02	82.5	+/-4.3
				PHDpsi	73.8	+/-1.2	67.7	+/-1.9	2.3	+/-0.5	0.33	+/-0.02	0.64	+/-0.03	0.56	+/-0.03	0.50	+/-0.02	86.2	+/-3.9
				PROFsec	76.1	+/-1.2	71.7	+/-1.9	2.1	+/-0.5	0.37	+/-0.02	0.68	+/-0.03	0.62	+/-0.03	0.54	+/-0.02	90.0	+/-3.4
				PSIpred	75.6	+/-1.4	71.1	+/-2.0	2.5	+/-0.4	0.37	+/-0.02	0.68	+/-0.03	0.62	+/-0.03	0.55	+/-0.02	83.8	+/-4.2
				SAM-T99sec	74.9	+/-1.2	68.9	+/-2.0	2.1	+/-0.4	0.35	+/-0.02	0.68	+/-0.04	0.61	+/-0.03	0.53	+/-0.02	88.8	+/-3.6
common 4	80	dssp	2	PHD	70.1	+/-1.5	64.5	+/-2.0	4.7	+/-0.9	0.29	+/-0.02	0.61	+/-0.04	0.52	+/-0.03	0.47	+/-0.02	81.2	+/-4.4

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 5			Sorted alphabetically for identical ranks!		MORE SCORES
common 5	105	dssp	1	PROFsec	75.1	+/-1.1	70.7	+/-1.6	2.5	+/-0.5	0.35	+/-0.02	0.68	+/-0.03	0.62	+/-0.03	0.54	+/-0.02	87.6	+/-3.2
				PSIpred	75.5	+/-1.2	71.4	+/-1.8	2.5	+/-0.4	0.37	+/-0.02	0.68	+/-0.03	0.62	+/-0.03	0.55	+/-0.02	83.8	+/-3.6
				SAM-T99sec	74.6	+/-1.1	68.9	+/-1.6	2.5	+/-0.4	0.34	+/-0.02	0.68	+/-0.03	0.61	+/-0.03	0.53	+/-0.02	89.5	+/-3.0
common 5	105	dssp	2	PHDpsi	72.8	+/-1.1	67.1	+/-1.7	2.7	+/-0.5	0.32	+/-0.02	0.64	+/-0.03	0.56	+/-0.03	0.50	+/-0.02	85.7	+/-3.4
common 5	105	dssp	3	PHD	69.8	+/-1.3	64.7	+/-1.7	4.7	+/-0.8	0.28	+/-0.02	0.61	+/-0.03	0.52	+/-0.03	0.47	+/-0.02	81.9	+/-3.8

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 6			Sorted alphabetically for identical ranks!		MORE SCORES
common 6	168	dssp	1	PROFsec	74.9	+/-0.9	71.5	+/-1.3	2.7	+/-0.4	0.35	+/-0.01	0.68	+/-0.02	0.62	+/-0.02	0.54	+/-0.01	86.3	+/-2.7
				PSIpred	75.4	+/-1.0	72.5	+/-1.3	2.7	+/-0.3	0.37	+/-0.01	0.68	+/-0.02	0.62	+/-0.02	0.55	+/-0.02	83.9	+/-2.8
common 6	168	dssp	2	PHDpsi	72.3	+/-1.0	67.8	+/-1.4	3.0	+/-0.4	0.32	+/-0.01	0.64	+/-0.02	0.56	+/-0.02	0.50	+/-0.01	82.7	+/-2.9
common 6	168	dssp	3	PHD	69.7	+/-1.0	65.6	+/-1.4	4.5	+/-0.5	0.28	+/-0.01	0.61	+/-0.02	0.52	+/-0.02	0.47	+/-0.01	79.2	+/-3.1