METHOD about: | ../../../doc/explain_methods.html#PX_about_prospect |
METHOD url: | Prospect |
TYPE : | sec |
NPROT : | 286 |
NWEEKS : | 74 |
NOTE 1 : | here ALL results obtained for Prospect in month 2003_12 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2003_12 | dssp | ALL_proteins:psum | 71.4 | 75 | 77 | 58 | 69 | 75 | 69 | 67.9 | 71.1 | 68.0 | 66.1 | 3.5 | 0.31 | 0.31 | 0.31 | 0.63 | 0.55 | 0.50 | 8216.7 | 9.0 | 7.9 |
sec | 2003_12 | dssp | ALL_proteins:sig | 13.6 | 34 | 35 | 38 | 44 | 14 | 15 | 18.0 | 28.7 | 31.6 | 17.8 | 6.5 | 0.17 | 0.17 | 0.17 | 0.30 | 0.32 | 0.21 | 8148.9 | 10.5 | 10.0 |
sec | 2003_12 | dssp | ALL_proteins:errsig | 0.80 | 2 | 2 | 2 | 2 | 0.84 | 0.92 | 1.0 | 1.6 | 1.8 | 1.0 | 0.38 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 481.8 | 0.62 | 0.59 |
sec | 2003_12 | dssp | THIS_month:psum | 71.3 | 51 | 54 | 37 | 39 | 75 | 67 | 66.7 | 73.9 | 65.5 | 62.5 | 5.4 | 0.29 | 0.31 | 0.27 | 0.64 | 0.67 | 0.42 | 85.7 | 13.5 | 11.2 |
sec | 2003_12 | dssp | 1j27:A | 88.8 | 91 | 88 | 90 | 97 | 81 | 75 | 87.1 | 77 | 100 | 86 | 1.0 | 0.64 | 0.65 | 0.64 | 0.84 | 0.89 | 0.71 | 100.0 | 1.0 | 3.0 |
sec | 2003_12 | dssp | 1pc0:A | 85.2 | 0 | 0 | 96 | 79 | 72 | 95 | 95.1 | 100 | 100 | 89 | 0.0 | 0.44 | 0.43 | 0.46 | 1.0 | 0.72 | 0.72 | 100.0 | 0.00 | 11.0 |
sec | 2003_12 | dssp | 1pd3:A | 92.6 | 93 | 97 | 0 | 0 | 90 | 75 | 97.8 | 100 | 100 | 88 | 0.0 | 0.53 | 0.56 | 0.50 | 0.77 | 1.0 | 0.77 | 100.0 | 3.0 | 0.00 |
sec | 2003_12 | dssp | 1q3j:A | 77.8 | 0 | 0 | 0 | 0 | 100 | 77 | 27.2 | 100 | 0 | 34 | 0.0 | 0.00 | 0.00 | 0.00 | 1.0 | 1.0 | 0.00 | 100.0 | 0.00 | 22.0 |
sec | 2003_12 | dssp | 1q7s:A | 78.6 | 92 | 87 | 52 | 90 | 84 | 57 | 80.3 | 94 | 63 | 73 | 4.2 | 0.46 | 0.46 | 0.47 | 0.81 | 0.60 | 0.59 | 0.0 | 2.0 | 12.0 |
sec | 2003_12 | dssp | 1q90:L | 50.0 | 48 | 100 | 0 | 0 | 57 | 30 | 69.2 | 72 | 100 | 59 | 12.5 | 0.17 | 0.24 | 0.12 | 0.40 | 1.0 | 0.17 | 100.0 | 40.0 | 21.0 |
sec | 2003_12 | dssp | 1q90:M | 44.1 | 41 | 92 | 0 | 0 | 66 | 28 | 32.6 | 32 | 100 | 44 | 38.2 | 0.14 | 0.23 | 0.07 | 0.04 | 1.0 | 0.35 | 100.0 | 50.0 | 38.0 |
sec | 2003_12 | dssp | 1q90:N | 48.4 | 48 | 80 | 0 | 0 | 50 | 18 | 57.1 | 67 | 100 | 12 | 0.0 | 0.00 | 0.00 | 0.00 | -0.01 | 1.0 | -0.01 | 100.0 | 32.0 | 0.00 |
sec | 2003_12 | dssp | 1r21:A | 87.0 | 0 | 0 | 86 | 85 | 87 | 88 | 95.6 | 100 | 94 | 96 | 0.0 | 0.44 | 0.44 | 0.44 | 1.0 | 0.73 | 0.73 | 100.0 | 0.00 | 0.00 |
sec | 2003_12 | dssp | 1rf8:B | 71.0 | 50 | 80 | 0 | 0 | 82 | 83 | 58.1 | 51 | 0 | 60 | 6.0 | 0.19 | 0.22 | 0.17 | 0.51 | -0.04 | 0.48 | 100.0 | 12.0 | 13.0 |
sec | 2003_12 | dssp | 1rji:A | 67.7 | 0 | 0 | 0 | 0 | 91 | 72 | 33.3 | 0 | 0 | 44 | 0.0 | 0.05 | 0.03 | 0.08 | 1.0 | -0.10 | -0.15 | 100.0 | 12.0 | 6.0 |
sec | 2003_12 | dssp | 1roc:A | 69.7 | 53 | 32 | 61 | 90 | 83 | 68 | 71.9 | 42 | 77 | 72 | 7.0 | 0.25 | 0.27 | 0.25 | 0.33 | 0.58 | 0.54 | 100.0 | 6.0 | 15.0 |
sec | 2003_12 | dssp | 1rws:A | 54.4 | 100 | 26 | 62 | 26 | 48 | 100 | 52.1 | 100 | 29 | 50 | 4.4 | 0.21 | 0.27 | 0.16 | 0.43 | 0.28 | 0.40 | 0.0 | 25.0 | 16.0 |
sec | 2003_12 | dssp | 1usm:A | 83.1 | 100 | 83 | 76 | 80 | 69 | 85 | 77.1 | 100 | 55 | 68 | 2.5 | 0.54 | 0.54 | 0.55 | 0.85 | 0.70 | 0.67 | 100.0 | 7.0 | 1.0 |
sec | 2003_12 | dssp | THIS_month:psum | 71.3 | 51 | 54 | 37 | 39 | 75 | 67 | 66.7 | 73.9 | 65.5 | 62.5 | 5.4 | 0.29 | 0.31 | 0.27 | 0.64 | 0.67 | 0.42 | 85.7 | 13.5 | 11.2 |
sec | 2003_12 | dssp | ALL_proteins:psum | 71.4 | 75 | 77 | 58 | 69 | 75 | 69 | 67.9 | 71.1 | 68.0 | 66.1 | 3.5 | 0.31 | 0.31 | 0.31 | 0.63 | 0.55 | 0.50 | 8216.7 | 9.0 | 7.9 |
sec | 2003_12 | dssp | ALL_proteins:sig | 13.6 | 34 | 35 | 38 | 44 | 14 | 15 | 18.0 | 28.7 | 31.6 | 17.8 | 6.5 | 0.17 | 0.17 | 0.17 | 0.30 | 0.32 | 0.21 | 8148.9 | 10.5 | 10.0 |
sec | 2003_12 | dssp | ALL_proteins:errsig | 0.80 | 2 | 2 | 2 | 2 | 0.84 | 0.92 | 1.0 | 1.6 | 1.8 | 1.0 | 0.38 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 481.8 | 0.62 | 0.59 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |