# Perl-RDB EVA:method.rdb=results of all ids for method=sable2 of type=sec # # Copyright : Volker Eyrich & Burkhard Rost, CUBIC Columbia Univ, New York City # Email : rost@columbia.edu # WWW : http://cubic.bioc.columbia.edu/eva # Version : version 0.1: 2000_04_12 # # -------------------------------------------------------------------------------- # # Notation used : # # NOTATION BODY : # NOTATION date : date when added [yyyy_mm_dd] # NOTATION type : prediction type # NOTATION method : name of prediction method # NOTATION sots : standard of truth # NOTATION id : identifier of protein # NOTATION nres : number of residues # NOTATION nali : number of proteins aligned # NOTATION : average reliability index # NOTATION z : zscore for # NOTATION oH : number of helix residues observed # NOTATION oE : number of strand residues observed # NOTATION oL : number of loop residues observed # NOTATION Q3 : three-state per-residue accuracy (percentage of correctly predicted residues) # NOTATION Q3H%o : correctly predicted helix residues (percentage of helix observed) # NOTATION Q3H%p : correctly predicted helix residues (percentage of helix predicted) # NOTATION Q3E%o : correctly predicted strand residues (percentage of helix observed) # NOTATION Q3E%p : correctly predicted strand residues (percentage of helix predicted) # NOTATION Q3L%o : correctly predicted loop residues (percentage of helix observed) # NOTATION Q3L%p : correctly predicted loop residues (percentage of helix predicted) # NOTATION sov : per segment accuracy (three states) # NOTATION sovH : per segment accuracy for helix residues # NOTATION sovE : per segment accuracy for strand residues # NOTATION sovL : per segment accuracy for non-regular residues # NOTATION BAD : percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) # NOTATION info : infoO + infoP / 2 # NOTATION infoO : information index accuracy (percentage of observed) # NOTATION infoP : information index accuracy (percentage of predicted) # NOTATION corrH : Matthews correlation index for helix # NOTATION corrE : Matthews correlation index for strand # NOTATION corrL : Matthews correlation index for loop # NOTATION classO : secondary structure class according to DSSP ( # NOTATION classP : secondary structure class predicted ( # NOTATION o1p1,o1p2,o1p3,o2p1,o2p2,o2p3,o3p1,o3p2,o3p3: oIpJ=number of residues observed in state I and predicted in state J # NOTATION rino:0,1,2,3,4,5,6,7,8,9,10: number of residues predicted at index level given (val/10) # NOTATION riok:0,1,2,3,4,5,6,7,8,9,10: number of residues correctly predicted at index level given (val/10) # date type method sots id nres nali z oH oE oL Q3 Q3H%o Q3H%p Q3E%o Q3E%p Q3L%o Q3L%p sov sovH sovE sovL BAD info infoO infoP corrH corrE corrL class classO classP contDH contDE o1p1,o1p2,o1p3,o2p1,o2p2,o2p3,o3p1,o3p2,o3p3 rino:0,1,2,3,4,5,6,7,8,9,10 riok:0,1,2,3,4,5,6,7,8,9,10 2004_02_24 sec sable2 dssp 1nxh:A 124 ? 7.20 0.000 73 0 26 75.8 96 76 0 0 18 66 48.4 58 100 21 0.0 0.076 0.05 0.11 0.253 1.000 0.253 100.0 all-alpha all-alpha 19.00 0.00 88,0,3,0,0,0,27,0,6 0,0,0,1,8,10,11,31,42,21,0 0,0,0,0,3,3,8,25,34,21,0 2004_02_24 sec sable2 dssp 1pzq:A 60 ? 7.03 0.000 55 0 45 88.3 87 96 0 0 88 85 79.1 100 100 64 0.0 0.567 0.61 0.52 0.837 1.000 0.765 100.0 other other 5.00 3.00 29,0,4,0,0,0,1,2,24 0,0,0,0,5,8,9,11,12,15,0 0,0,0,0,2,8,8,9,11,15,0 2004_02_24 sec sable2 dssp 1pzr:A 60 ? 7.78 0.000 70 0 30 90.0 95 100 0 0 77 87 83.1 100 100 60 0.0 0.735 0.83 0.64 0.925 1.000 0.756 100.0 other other 3.00 6.00 40,0,2,0,0,0,0,4,14 0,0,0,0,2,3,5,11,14,25,0 0,0,0,0,2,3,3,8,13,25,0 2004_02_24 sec sable2 dssp 1qz8:A 111 ? 6.41 0.000 12 45 41 79.3 92 76 78 83 76 76 84.1 100 90 73 0.9 0.450 0.46 0.44 0.817 0.654 0.591 100.0 other other 2.00 2.00 13,1,0,0,40,11,4,7,35 0,0,0,2,8,20,24,26,31,0,0 0,0,0,1,3,15,20,20,29,0,0 2004_02_24 sec sable2 dssp 1s0y:B 55 ? 5.47 0.000 45 29 25 52.7 80 51 12 100 50 50 51.7 77 18 42 21.8 0.110 0.09 0.13 0.182 0.303 0.329 100.0 other other 25.00 25.00 20,0,5,12,2,2,7,0,7 0,0,0,1,16,12,12,10,4,0,0 0,0,0,0,6,4,8,9,2,0,0 2004_02_24 sec sable2 dssp 1s5l:I 38 ? 7.03 0.000 57 0 42 86.8 81 94 0 0 93 100 100.0 100 100 100 10.5 0.728 0.85 0.61 0.746 1.000 0.946 100.0 other other 7.00 10.00 18,4,0,0,0,0,1,0,15 0,0,0,0,3,5,7,5,9,9,0 0,0,0,0,1,2,7,5,9,9,0 2004_02_24 sec sable2 dssp 1s5l:J 38 ? 6.74 0.000 65 0 34 78.9 88 91 0 0 61 72 79.4 88 100 62 0.0 0.398 0.45 0.34 0.714 1.000 0.518 100.0 other other 2.00 7.00 22,0,3,0,0,0,2,3,8 0,0,0,0,5,7,3,9,6,8,0 0,0,0,0,4,4,1,7,6,8,0 2004_02_24 sec sable2 dssp 1s5l:L 37 ? 7.16 0.000 62 0 37 89.2 91 100 0 0 85 85 78.7 100 100 60 0.0 0.682 0.77 0.60 0.893 1.000 0.770 100.0 other other 5.00 5.00 21,0,2,0,0,0,0,2,12 0,0,0,1,4,3,4,6,6,13,0 0,0,0,0,2,2,4,6,6,13,0 2004_02_24 sec sable2 dssp 1s5l:M 30 ? 7.47 0.000 80 0 20 83.3 100 96 0 0 16 100 83.3 100 100 16 0.0 0.698 0.72 0.68 0.894 1.000 0.371 100.0 other other 3.00 13.00 24,0,0,0,0,0,1,4,1 0,0,0,0,4,3,1,1,9,12,0 0,0,0,0,0,2,1,1,9,12,0 2004_02_24 sec sable2 dssp 1s5l:T 31 ? 6.84 0.000 61 0 38 87.1 89 94 0 0 83 100 100.0 100 100 100 6.4 0.625 0.72 0.53 0.800 1.000 0.868 100.0 other other 3.00 9.00 17,2,0,0,0,0,1,1,10 0,0,0,1,4,4,4,4,5,9,0 0,0,0,0,2,4,3,4,5,9,0 2004_02_24 sec sable2 dssp 1s5l:X 40 ? 7.20 0.000 72 0 27 72.5 100 72 0 0 0 0 72.5 100 100 0 0.0 0.000 0.00 0.00 0.000 1.000 1.000 100.0 other other 27.00 0.00 29,0,0,0,0,0,11,0,0 0,0,0,0,0,5,7,11,9,8,0 0,0,0,0,0,1,2,10,8,8,0 2004_02_24 sec sable2 dssp 1s5l:Z 58 ? 7.50 0.000 84 0 15 79.3 83 97 0 0 55 45 92.7 100 100 53 3.4 0.292 0.37 0.21 0.587 1.000 0.400 100.0 other other 12.00 8.00 41,2,6,0,0,0,1,3,5 0,0,0,0,4,2,9,9,14,20,0 0,0,0,0,2,2,3,5,14,20,0 2004_02_24 sec sable2 dssp 1s68:A 233 ? 6.23 0.000 27 29 42 69.1 83 67 70 66 59 72 67.8 74 75 59 3.8 0.279 0.28 0.28 0.638 0.551 0.441 0.0 other alpha-beta 6.00 1.00 54,2,9,7,48,13,19,22,59 0,0,0,4,37,51,39,41,34,27,0 0,0,0,1,18,35,27,27,30,23,0 2004_02_24 sec sable2 dssp 1s6c:B 21 ? 5.57 0.000 66 0 33 57.1 78 73 0 0 14 25 43.6 63 100 3 0.0 0.163 0.18 0.15 0.223 1.000 -0.085 100.0 other other 4.00 9.00 11,0,3,0,0,0,4,2,1 0,0,0,5,1,3,4,5,3,0,0 0,0,0,1,0,1,3,4,3,0,0 2004_03_02 sec sable2 dssp 1rqt:A 37 ? 7.35 0.000 59 0 40 83.8 100 78 0 0 60 100 56.5 65 100 47 0.0 0.463 0.42 0.51 0.686 1.000 0.686 100.0 other other 16.00 0.00 22,0,0,0,0,0,6,0,9 0,0,0,2,3,4,4,2,2,20,0 0,0,0,2,3,2,4,2,2,16,0 2004_03_09 sec sable2 dssp 1nng:A 141 ? 7.23 0.000 23 38 38 87.2 87 85 92 89 81 86 84.9 90 88 77 0.7 0.597 0.60 0.60 0.823 0.851 0.742 100.0 other other 0.00 1.00 29,0,4,1,50,3,4,6,44 0,0,0,0,4,15,19,38,36,29,0 0,0,0,0,1,7,17,36,35,27,0 2004_03_09 sec sable2 dssp 1oyi:A 62 ? 7.53 0.000 51 11 37 79.0 93 78 71 62 60 87 81.7 95 62 68 3.2 0.411 0.40 0.42 0.688 0.622 0.615 100.0 other other 9.00 1.00 30,0,2,2,5,0,6,3,14 0,0,0,1,3,5,6,7,18,22,0 0,0,0,1,3,2,3,6,14,20,0 2004_03_09 sec sable2 dssp 1pjv:A 32 ? 5.34 0.000 28 31 40 31.2 0 0 0 0 76 37 8.8 0 0 21 6.2 0.104 0.06 0.15 1.000 -0.290 -0.169 100.0 other other 28.00 15.00 0,2,7,0,0,10,0,3,10 0,0,0,2,9,6,10,1,4,0,0 0,0,0,0,2,2,5,1,0,0,0 2004_03_09 sec sable2 dssp 1qw2:A 102 ? 6.45 0.000 24 30 45 74.5 92 58 77 82 63 85 75.6 86 82 66 3.9 0.385 0.39 0.38 0.630 0.717 0.571 0.0 other alpha-beta 13.00 1.00 23,0,2,4,24,3,12,5,29 0,0,0,1,12,24,17,17,13,18,0 0,0,0,0,8,13,15,15,8,17,0 2004_03_09 sec sable2 dssp 1r4g:A 53 ? 7.09 0.000 67 0 32 88.7 97 87 0 0 70 92 98.1 100 100 94 0.0 0.468 0.44 0.50 0.735 1.000 0.735 100.0 other other 7.00 0.00 35,0,1,0,0,0,5,0,12 0,0,0,0,3,9,10,7,6,18,0 0,0,0,0,2,7,9,6,5,18,0 2004_03_23 sec sable2 dssp 1pgy:A 47 ? 7.26 0.000 70 0 29 83.0 100 82 0 0 42 100 44.7 42 100 50 0.0 0.398 0.35 0.44 0.642 1.000 0.587 100.0 other other 14.00 2.00 33,0,0,0,0,0,7,1,6 0,0,0,0,3,4,6,11,11,12,0 0,0,0,0,2,4,6,9,7,11,0 2004_03_23 sec sable2 dssp 1rkl:A 36 ? 7.06 0.000 63 0 36 91.7 100 88 0 0 76 100 100.0 100 100 100 0.0 0.637 0.60 0.67 0.824 1.000 0.824 100.0 other other 8.00 0.00 23,0,0,0,0,0,3,0,10 0,0,0,0,1,4,6,9,13,3,0 0,0,0,0,0,2,6,9,13,3,0 2004_03_23 sec sable2 dssp 1s4z:C 30 ? 5.50 0.000 0 10 90 43.3 0 0 0 0 48 100 41.9 100 0 45 10.0 0.185 0.28 0.09 1.000 -0.130 0.291 100.0 other other 43.00 3.00 0,0,0,3,0,0,10,4,13 0,0,0,2,6,7,5,10,0,0,0 0,0,0,0,1,5,5,2,0,0,0 2004_03_30 sec sable2 dssp 1v74:A 107 ? 6.10 0.000 36 19 43 71.0 64 83 66 56 78 71 74.0 74 57 82 5.6 0.269 0.27 0.27 0.608 0.505 0.533 100.0 other other 8.00 3.00 25,5,9,1,14,6,4,6,37 0,0,0,1,16,24,20,26,16,4,0 0,0,0,1,9,13,12,21,16,4,0 2004_03_30 sec sable2 dssp 1v74:B 87 ? 6.17 0.000 62 2 35 75.9 90 80 0 0 54 73 70.0 79 0 57 1.1 0.252 0.25 0.26 0.576 -0.028 0.479 100.0 all-alpha all-alpha 8.00 1.00 49,1,4,0,0,2,12,2,17 0,0,0,1,9,22,19,18,14,4,0 0,0,0,0,5,16,14,13,14,4,0 2004_03_30 sec sable2 dssp 1vjq:A 73 ? 7.36 0.000 32 28 38 86.3 95 92 85 81 78 84 95.7 100 95 92 0.0 0.611 0.61 0.61 0.908 0.769 0.707 100.0 alpha-beta alpha-beta 1.00 1.00 23,0,1,0,18,3,2,4,22 0,0,0,1,5,8,5,11,20,23,0 0,0,0,1,2,7,4,9,17,23,0 2004_04_13 sec sable2 dssp 1nei:A 60 ? 6.42 0.000 33 20 46 81.7 80 100 83 58 82 85 80.7 85 100 72 3.3 0.518 0.52 0.51 0.852 0.610 0.698 100.0 other other 6.00 8.00 16,2,2,0,10,2,0,5,23 0,0,0,0,8,12,10,14,9,7,0 0,0,0,0,3,8,9,13,9,7,0 2004_04_13 sec sable2 dssp 1pv0:A 46 ? 6.85 0.000 58 0 41 87.0 96 96 0 0 73 93 75.4 100 100 53 0.0 0.656 0.74 0.57 0.910 1.000 0.735 100.0 other other 0.00 8.00 26,0,1,0,0,0,1,4,14 0,0,0,0,4,7,8,9,9,9,0 0,0,0,0,3,6,6,7,9,9,0 2004_04_13 sec sable2 dssp 1rk8:C 33 ? 6.00 0.000 0 39 60 72.7 0 0 38 83 95 70 54.9 100 46 60 0.0 0.164 0.14 0.19 1.000 0.423 0.423 100.0 other other 0.00 21.00 0,0,0,0,5,8,0,1,19 0,0,0,0,5,9,5,9,5,0,0 0,0,0,0,3,5,5,6,5,0,0 2004_04_13 sec sable2 dssp 1rli:A 30 ? 7.90 0.000 33 23 43 83.3 90 81 85 85 76 83 90.6 100 85 85 0.0 0.534 0.54 0.53 0.782 0.813 0.659 100.0 other other 3.00 0.00 9,0,1,0,6,1,2,1,10 0,0,0,0,0,2,1,8,6,13,0 0,0,0,0,0,2,0,5,5,13,0