# Perl-RDB EVA:method.rdb=results of all ids for method=sspro4 of type=sec # # Copyright : Volker Eyrich & Burkhard Rost, CUBIC Columbia Univ, New York City # Email : rost@columbia.edu # WWW : http://cubic.bioc.columbia.edu/eva # Version : version 0.1: 2000_04_12 # # -------------------------------------------------------------------------------- # # Notation used : # # NOTATION BODY : # NOTATION date : date when added [yyyy_mm_dd] # NOTATION type : prediction type # NOTATION method : name of prediction method # NOTATION sots : standard of truth # NOTATION id : identifier of protein # NOTATION nres : number of residues # NOTATION nali : number of proteins aligned # NOTATION : average reliability index # NOTATION z : zscore for # NOTATION oH : number of helix residues observed # NOTATION oE : number of strand residues observed # NOTATION oL : number of loop residues observed # NOTATION Q3 : three-state per-residue accuracy (percentage of correctly predicted residues) # NOTATION Q3H%o : correctly predicted helix residues (percentage of helix observed) # NOTATION Q3H%p : correctly predicted helix residues (percentage of helix predicted) # NOTATION Q3E%o : correctly predicted strand residues (percentage of helix observed) # NOTATION Q3E%p : correctly predicted strand residues (percentage of helix predicted) # NOTATION Q3L%o : correctly predicted loop residues (percentage of helix observed) # NOTATION Q3L%p : correctly predicted loop residues (percentage of helix predicted) # NOTATION sov : per segment accuracy (three states) # NOTATION sovH : per segment accuracy for helix residues # NOTATION sovE : per segment accuracy for strand residues # NOTATION sovL : per segment accuracy for non-regular residues # NOTATION BAD : percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) # NOTATION info : infoO + infoP / 2 # NOTATION infoO : information index accuracy (percentage of observed) # NOTATION infoP : information index accuracy (percentage of predicted) # NOTATION corrH : Matthews correlation index for helix # NOTATION corrE : Matthews correlation index for strand # NOTATION corrL : Matthews correlation index for loop # NOTATION classO : secondary structure class according to DSSP ( # NOTATION classP : secondary structure class predicted ( # NOTATION o1p1,o1p2,o1p3,o2p1,o2p2,o2p3,o3p1,o3p2,o3p3: oIpJ=number of residues observed in state I and predicted in state J # NOTATION rino:0,1,2,3,4,5,6,7,8,9,10: number of residues predicted at index level given (val/10) # NOTATION riok:0,1,2,3,4,5,6,7,8,9,10: number of residues correctly predicted at index level given (val/10) # date type method sots id nres nali z oH oE oL Q3 Q3H%o Q3H%p Q3E%o Q3E%p Q3L%o Q3L%p sov sovH sovE sovL BAD info infoO infoP corrH corrE corrL class classO classP contDH contDE o1p1,o1p2,o1p3,o2p1,o2p2,o2p3,o3p1,o3p2,o3p3 rino:0,1,2,3,4,5,6,7,8,9,10 riok:0,1,2,3,4,5,6,7,8,9,10 2004_02_24 sec sspro4 dssp 1nxh:A 124 ? 10.00 0.000 73 0 26 74.2 90 78 0 0 30 52 60.6 69 100 28 0.0 0.057 0.05 0.07 0.250 1.000 0.250 100.0 all-alpha all-alpha 11.00 0.00 82,0,9,0,0,0,23,0,10 0,0,0,0,0,0,0,0,0,0,124 0,0,0,0,0,0,0,0,0,0,92 2004_02_24 sec sspro4 dssp 1pzq:A 60 ? 10.00 0.000 55 0 45 85.0 81 96 0 0 88 80 80.4 100 100 65 0.0 0.490 0.53 0.45 0.778 1.000 0.703 100.0 other other 8.00 3.00 27,0,6,0,0,0,1,2,24 0,0,0,0,0,0,0,0,0,0,60 0,0,0,0,0,0,0,0,0,0,51 2004_02_24 sec sspro4 dssp 1pzr:A 60 ? 10.00 0.000 70 0 30 83.3 85 90 0 0 77 70 67.5 71 100 57 0.0 0.305 0.31 0.30 0.617 1.000 0.617 100.0 other other 3.00 0.00 36,0,6,0,0,0,4,0,14 0,0,0,0,0,0,0,0,0,0,60 0,0,0,0,0,0,0,0,0,0,50 2004_03_02 sec sspro4 dssp 1rqt:A 37 ? 10.00 0.000 59 0 40 86.5 100 81 0 0 66 100 62.2 68 100 56 0.0 0.520 0.48 0.56 0.737 1.000 0.737 100.0 other other 13.00 0.00 22,0,0,0,0,0,5,0,10 0,0,0,0,0,0,0,0,0,0,37 0,0,0,0,0,0,0,0,0,0,32 2004_03_09 sec sspro4 dssp 1nng:A 141 ? 10.00 0.000 23 38 38 90.1 87 90 92 94 88 85 87.1 90 93 78 0.0 0.671 0.67 0.67 0.860 0.894 0.791 100.0 other other 0.00 0.00 29,0,4,0,50,4,3,3,48 0,0,0,0,0,0,0,0,0,0,141 0,0,0,0,0,0,0,0,0,0,127 2004_03_09 sec sspro4 dssp 1oyi:A 62 ? 10.00 0.000 51 11 37 71.0 96 73 42 42 43 76 59.9 71 40 50 3.2 0.291 0.27 0.31 0.643 0.355 0.424 100.0 other other 16.00 0.00 31,0,1,2,3,2,9,4,10 0,0,0,0,0,0,0,0,0,0,62 0,0,0,0,0,0,0,0,0,0,44 2004_03_09 sec sspro4 dssp 1pjv:A 32 ? 10.00 0.000 28 31 40 31.2 0 0 0 0 76 43 15.7 0 0 38 18.7 0.203 0.17 0.24 -0.201 -0.323 0.092 100.0 other other 18.00 12.00 0,3,6,3,0,7,0,3,10 0,0,0,0,0,0,0,0,0,0,32 0,0,0,0,0,0,0,0,0,0,10 2004_03_09 sec sspro4 dssp 1qw2:A 102 ? 10.00 0.000 24 30 45 81.4 92 71 87 79 71 91 82.6 92 81 78 2.9 0.493 0.50 0.49 0.744 0.753 0.691 0.0 other alpha-beta 6.00 2.00 23,0,2,3,27,1,6,7,33 0,0,0,0,0,0,0,0,0,0,102 0,0,0,0,0,0,0,0,0,0,83 2004_03_09 sec sspro4 dssp 1r4g:A 53 ? 10.00 0.000 67 0 32 77.4 75 90 0 0 82 82 81.9 77 100 90 11.3 0.391 0.47 0.31 0.540 1.000 0.740 100.0 other other 11.00 11.00 27,6,3,0,0,0,3,0,14 0,0,0,0,0,0,0,0,0,0,53 0,0,0,0,0,0,0,0,0,0,41 2004_03_23 sec sspro4 dssp 1pgy:A 47 ? 10.00 0.000 70 0 29 91.5 93 93 0 0 85 85 97.4 100 100 91 0.0 0.535 0.54 0.54 0.796 1.000 0.796 100.0 other other 0.00 0.00 31,0,2,0,0,0,2,0,12 0,0,0,0,0,0,0,0,0,0,47 0,0,0,0,0,0,0,0,0,0,43 2004_03_23 sec sspro4 dssp 1rkl:A 36 ? 10.00 0.000 63 0 36 91.7 100 88 0 0 76 100 97.2 100 100 92 0.0 0.637 0.60 0.67 0.824 1.000 0.824 100.0 other other 8.00 0.00 23,0,0,0,0,0,3,0,10 0,0,0,0,0,0,0,0,0,0,36 0,0,0,0,0,0,0,0,0,0,33 2004_03_23 sec sspro4 dssp 1s4z:C 30 ? 10.00 0.000 0 10 90 60.0 0 0 66 22 59 94 59.5 100 60 59 0.0 0.081 0.12 0.04 1.000 0.266 0.156 100.0 other other 13.00 20.00 0,0,0,0,2,1,4,7,16 0,0,0,0,0,0,0,0,0,0,30 0,0,0,0,0,0,0,0,0,0,18 2004_03_30 sec sspro4 dssp 1v74:A 107 ? 10.00 0.000 36 19 43 70.1 58 100 52 50 87 66 71.9 74 55 77 4.6 0.326 0.31 0.34 0.690 0.389 0.525 100.0 other other 14.00 0.00 23,5,11,0,11,10,0,6,41 0,0,0,0,0,0,0,0,0,0,107 0,0,0,0,0,0,0,0,0,0,75 2004_03_30 sec sspro4 dssp 1v74:B 87 ? 10.00 0.000 62 2 35 69.0 66 87 50 9 74 65 61.4 56 25 78 8.0 0.198 0.22 0.17 0.500 0.172 0.515 0.0 all-alpha other 14.00 10.00 36,7,11,0,1,1,5,3,23 0,0,0,0,0,0,0,0,0,0,87 0,0,0,0,0,0,0,0,0,0,60 2004_03_30 sec sspro4 dssp 1vjq:A 73 ? 10.00 0.000 32 28 38 83.6 100 82 76 88 75 80 88.8 100 90 77 0.0 0.597 0.59 0.60 0.862 0.759 0.648 100.0 alpha-beta alpha-beta 6.00 4.00 24,0,0,0,16,5,5,2,21 0,0,0,0,0,0,0,0,0,0,73 0,0,0,0,0,0,0,0,0,0,61 2004_04_13 sec sspro4 dssp 1nei:A 60 ? 10.00 0.000 33 20 46 86.7 90 100 75 75 89 83 96.9 100 93 96 0.0 0.627 0.62 0.63 0.925 0.687 0.734 100.0 other other 3.00 0.00 18,0,2,0,9,3,0,3,25 0,0,0,0,0,0,0,0,0,0,60 0,0,0,0,0,0,0,0,0,0,52 2004_04_13 sec sspro4 dssp 1pv0:A 46 ? 10.00 0.000 58 0 41 87.0 100 93 0 0 68 100 73.7 100 100 50 0.0 0.685 0.77 0.60 0.912 1.000 0.748 100.0 other other 4.00 8.00 27,0,0,0,0,0,2,4,13 0,0,0,0,0,0,0,0,0,0,46 0,0,0,0,0,0,0,0,0,0,40 2004_04_13 sec sspro4 dssp 1rk8:C 33 ? 10.00 0.000 0 39 60 72.7 0 0 38 83 95 70 57.0 100 48 62 0.0 0.164 0.14 0.19 1.000 0.423 0.423 100.0 other other 0.00 21.00 0,0,0,0,5,8,0,1,19 0,0,0,0,0,0,0,0,0,0,33 0,0,0,0,0,0,0,0,0,0,24 2004_04_13 sec sspro4 dssp 1rli:A 30 ? 10.00 0.000 33 23 43 90.0 90 100 100 77 84 91 96.7 100 100 92 0.0 0.736 0.74 0.73 0.925 0.842 0.796 100.0 other other 3.00 6.00 9,0,1,0,7,0,0,2,11 0,0,0,0,0,0,0,0,0,0,30 0,0,0,0,0,0,0,0,0,0,27