EVA: Detailed information for proteins added on: 2002_10_09

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2002_10_09	1gxm	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LYASE	MOLECULE: PECTATE LYASE; SYNONYM: POLYGALACTURONIC ACID LYASE; CHAIN: A, B; FRAGMENT: CATALYTIC MODULE, RESIDUES 327-649; EC: 4.2.2.2; ENGINEERED: YES	CELLVIBRIO CELLULOSA;	S.J.CHARNOCK,I.E.BROWN,J.P.TURKENBURG,G.W.BLACK,G.J.DAVIES
2002_10_09	1h3l	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	RNA POLYMERASE	MOLECULE: RNA POLYMERASE SIGMA FACTOR; SYNONYM: SIGR, SCO5216, SC7E4.13; CHAIN: A, B; FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 23-109; ENGINEERED: YES	STREPTOMYCES COELICOLOR A3(2); STRAIN: M145;	L.WEI,C.E.M.STEVENSON,N.BURTON,P.JAKIMOWICZ,M.S.B.PAGET, M.J.BUTTNER,D.M.LAWSON,C.KLEANTHOUS
2002_10_09	1hn6	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	MEMBRANE PROTEIN	MOLECULE: APICAL MEMBRANE ANTIGEN 1; CHAIN: A; FRAGMENT: DOMAIN III (RESIDUES 436-545); ENGINEERED: YES	PLASMODIUM FALCIPARUM; MALARIA PARASITE; GENE: PF83;	M.NAIR
2002_10_09	1kwi	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ANTIMICROBIAL PROTEIN	MOLECULE: PROTEGRIN-3 PRECURSOR; CHAIN: A; FRAGMENT: RESIDUES 30-130; ENGINEERED: YES	SUS SCROFA; PIG; GENE: PG3;	J.F.SANCHEZ,F.HOH,M.P.STRUB,A.AUMELAS,C.DUMAS
2002_10_09	1ll8	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	MOLECULE: PAS KINASE; CHAIN: A; FRAGMENT: PAS-A DOMAIN; EC: 2.7.1.37; ENGINEERED: YES	HOMO SAPIENS; HUMAN;	C.A.AMEZCUA,S.M.HARPER,J.RUTTER,K.H.GARDNER
2002_10_09	1msz	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	DNA BINDING PROTEIN	MOLECULE: DNA-BINDING PROTEIN SMUBP-2; CHAIN: A; FRAGMENT: R3H DOMAIN; ENGINEERED: YES	HOMO SAPIENS; HUMAN; GENE: SMUBP-2;	E.LIEPINSH,A.LEONCHIKS,A.SHARIPO,L.GUIGNARD,G.OTTING

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field