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EVA summary for category sec (2)

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Local link to information about methods evaluated
All prediction results for category sec (i.e. secondary structure)
Explanations of measures for prediction accuracy

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bup_common/index.html

About methods evaluated

method		nprot	nweek	detailed results for method
ALL		171	25
JPRED		134	20	method/jpred.html
PHD		171	25	method/phd.html
PSIpred		171	25	method/psipred.html
SSpro		145	21	method/sspro.html

Comparison of methods 2

Averages compiled over different subsets

The reason for compiling different averages is that not ALL proteins were predicted by all methods!
Only proteins with no significant sequence identity to previously known PDB proteins are reported, here.
The following subsets are given:

set 1: 134 proteins and 4 methods
set 2: 171 proteins and 2 methods

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 1			Sorted alphabetically for identical ranks!		MORE SCORES
common 1	134	dssp	1	PSIpred	75.9	+/-0.9	71.9	+/-1.3	2.9	+/-1.3	0.37	+/-1.30	0.65	+/-1.30	0.61	+/-1.30	0.55	+/-1.30	78.4	+/-1.3
				SSpro	76.1	+/-0.8	71.7	+/-1.3	2.7	+/-1.3	0.36	+/-1.30	0.67	+/-1.30	0.62	+/-1.30	0.56	+/-1.30	82.1	+/-1.3
common 1	134	dssp	2	JPRED	75.1	+/-0.8	69.7	+/-1.3	2.4	+/-1.3	0.34	+/-1.30	0.64	+/-1.30	0.59	+/-1.30	0.54	+/-1.30	76.9	+/-1.3
common 1	134	dssp	3	PHD	71.9	+/-0.9	68.2	+/-1.3	4.0	+/-1.3	0.29	+/-1.30	0.59	+/-1.30	0.57	+/-1.30	0.50	+/-1.30	79.1	+/-1.3

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 2			Sorted alphabetically for identical ranks!		MORE SCORES
common 2	171	dssp	1	PSIpred	76.4	+/-0.8	72.6	+/-1.1	2.6	+/-0.3	0.37	+/-0.01	0.66	+/-0.02	0.63	+/-0.02	0.56	+/-0.01	77.2	+/-3.2
common 2	171	dssp	2	PHD	72.1	+/-0.7	68.6	+/-0.9	3.8	+/-0.3	0.29	+/-0.01	0.59	+/-0.02	0.59	+/-0.02	0.49	+/-0.01	77.8	+/-3.2

All results

Last update: Oct 5, 2000
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva
WWW mirrors: ../doc/mirrors.html

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