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EVA summary for category sec (2)

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Local link to information about methods evaluated
All prediction results for category sec (i.e. secondary structure)
Explanations of measures for prediction accuracy

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About secondary structure methods evaluated

method		nprot	nweek	detailed results for method
ALL		199	29
JPRED		156	24	method/jpred.html
PHD		199	29	method/phd.html
		5	1	method/phdprof.html
PHDpsi		199	29	method/phdpsi.html
PROF		190	26	method/prof.html
PSIpred		196	28	method/psipred.html
PSSP		143	19	method/pssp.html
SAM-T99sec		18	7	method/samt99_sec.html
SSpro		173	25	method/sspro.html

Comparison of secondary structure methods (detail level 2)

Averages compiled over different subsets

The reason for compiling different averages is that not ALL proteins were predicted by all methods!
Only proteins with no significant sequence identity to previously known PDB proteins are reported, here.
The following subsets are given:

set 1: 0 proteins and 9 methods
set 2: 128 proteins and 7 methods
set 3: 150 proteins and 6 methods
set 4: 190 proteins and 4 methods

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 1			Sorted alphabetically for identical ranks!		MORE SCORES

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 2			Sorted alphabetically for identical ranks!		MORE SCORES
common 2	128	dssp	1	PROF	76.3	+/-0.7	71.8	+/-1.2	2.5	+/-0.3	0.35	+/-0.01	0.68	+/-0.02	0.63	+/-0.02	0.55	+/-0.01	83.6	+/-3.3
				PSIpred	76.7	+/-0.8	72.2	+/-1.3	2.4	+/-0.3	0.37	+/-0.01	0.67	+/-0.02	0.63	+/-0.02	0.56	+/-0.01	78.9	+/-3.6
				SSpro	76.7	+/-0.8	71.7	+/-1.2	2.5	+/-0.2	0.36	+/-0.01	0.68	+/-0.02	0.63	+/-0.02	0.56	+/-0.01	80.5	+/-3.5
common 2	128	dssp	2	JPRED	75.1	+/-0.8	68.9	+/-1.3	2.5	+/-0.3	0.34	+/-0.01	0.66	+/-0.02	0.59	+/-0.02	0.54	+/-0.01	73.4	+/-3.9
				PHDpsi	75.2	+/-0.7	70.7	+/-1.1	3.0	+/-0.3	0.33	+/-0.01	0.66	+/-0.02	0.60	+/-0.02	0.53	+/-0.01	78.1	+/-3.7
common 2	128	dssp	3	PHD	72.0	+/-0.9	68.2	+/-1.1	4.1	+/-0.4	0.29	+/-0.01	0.60	+/-0.02	0.58	+/-0.02	0.49	+/-0.01	75.8	+/-3.8
common 2	128	dssp	4	PSSP	64.4	+/-0.8	60.2	+/-1.1	6.3	+/-0.4	0.20	+/-0.01	0.46	+/-0.02	0.47	+/-0.02	0.39	+/-0.01	71.9	+/-4.0

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 3			Sorted alphabetically for identical ranks!		MORE SCORES
common 3	150	dssp	1	PROF	76.0	+/-0.7	72.1	+/-1.0	2.7	+/-0.3	0.35	+/-0.01	0.67	+/-0.02	0.63	+/-0.02	0.55	+/-0.01	82.0	+/-3.1
				PSIpred	76.0	+/-0.8	72.0	+/-1.1	2.8	+/-0.3	0.36	+/-0.01	0.65	+/-0.02	0.62	+/-0.02	0.55	+/-0.01	78.0	+/-3.4
				SSpro	76.0	+/-0.8	71.2	+/-1.1	2.8	+/-0.2	0.35	+/-0.01	0.67	+/-0.02	0.63	+/-0.02	0.56	+/-0.01	82.7	+/-3.1
common 3	150	dssp	2	JPRED	75.0	+/-0.7	69.5	+/-1.2	2.6	+/-0.3	0.34	+/-0.01	0.65	+/-0.02	0.60	+/-0.02	0.54	+/-0.01	76.7	+/-3.5
				PHDpsi	75.0	+/-0.7	71.0	+/-1.0	3.0	+/-0.3	0.33	+/-0.01	0.65	+/-0.02	0.60	+/-0.02	0.54	+/-0.01	80.7	+/-3.2
common 3	150	dssp	3	PHD	71.4	+/-0.8	67.9	+/-1.0	4.3	+/-0.3	0.28	+/-0.01	0.59	+/-0.02	0.58	+/-0.02	0.49	+/-0.01	77.3	+/-3.4

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 4			Sorted alphabetically for identical ranks!		MORE SCORES
common 4	190	dssp	1	PROF	76.1	+/-0.6	72.8	+/-0.9	2.7	+/-0.3	0.35	+/-0.01	0.67	+/-0.01	0.65	+/-0.02	0.56	+/-0.01	80.5	+/-2.9
				PSIpred	76.4	+/-0.7	72.5	+/-1.0	2.6	+/-0.3	0.37	+/-0.01	0.66	+/-0.02	0.64	+/-0.02	0.56	+/-0.01	77.4	+/-3.0
common 4	190	dssp	2	PHDpsi	74.7	+/-0.6	70.9	+/-0.9	3.0	+/-0.3	0.33	+/-0.01	0.65	+/-0.01	0.61	+/-0.02	0.53	+/-0.01	77.9	+/-3.0
common 4	190	dssp	3	PHD	71.6	+/-0.7	68.1	+/-0.9	4.1	+/-0.3	0.29	+/-0.01	0.58	+/-0.02	0.59	+/-0.02	0.49	+/-0.01	76.3	+/-3.1

All results

Last update: Nov 8, 2000
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva
WWW mirrors: ../doc/mirrors.html

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