EVA summary for category sec (2)

Contents

Method	Nprot	Nweek	Detailed results for method
ALL	404	69	method/index.html

APSSP	78	19	method/apssp.html
JPred	309	61	method/jpred.html
PHD	373	68	method/phd.html
PHDpsi	373	68	method/phdpsi.html
PROF_king	320	53	method/prof_king.html
PROFsec	348	67	method/profsec.html
PSIpred	362	67	method/psipred.html
PSSP	324	56	method/pssp.html
SAM-T99sec	222	51	method/samt99_sec.html
	1	1	method/sspro.html
SSpro1	275	44	method/sspro1.html
SSpro2	79	20	method/sspro2.html

Averages compiled over different subsets

The reason for compiling different averages is that not ALL proteins were predicted by all methods!
Only proteins with no significant sequence identity to previously known PDB proteins are reported, here.
The following subsets are given:
- set 1: 38 proteins and 10 methods (HTML - ASCII)
- set 2: 47 proteins and 8 methods (HTML - ASCII)
- set 3: 110 proteins and 9 methods (HTML - ASCII)
- set 4: 126 proteins and 7 methods (HTML - ASCII)
- set 5: 214 proteins and 6 methods (HTML - ASCII)
- set 6: 347 proteins and 4 methods (HTML - ASCII)
Detail level 2 (this file) as ASCII

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 1			Sorted alphabetically for identical ranks!		MORE SCORES
common 1	38	dssp	1	JPred	73.5	+/-1.9	70.2	+/-3.4	2.3	+/-0.6	0.32	+/-0.02	0.67	+/-0.04	0.58	+/-0.05	0.55	+/-0.03	76.3	+/-7.0
				PHDpsi	73.2	+/-1.6	68.9	+/-2.2	3.3	+/-0.7	0.32	+/-0.02	0.67	+/-0.05	0.57	+/-0.04	0.53	+/-0.02	86.8	+/-5.6
				PROF_king	75.2	+/-1.4	70.2	+/-2.9	1.8	+/-0.5	0.34	+/-0.02	0.68	+/-0.04	0.60	+/-0.04	0.54	+/-0.03	76.3	+/-7.0
				PROFsec	74.4	+/-1.6	72.1	+/-2.3	3.0	+/-0.8	0.33	+/-0.02	0.70	+/-0.05	0.63	+/-0.04	0.56	+/-0.02	84.2	+/-6.0
				PSIpred	75.8	+/-1.5	73.8	+/-2.6	1.6	+/-0.5	0.36	+/-0.03	0.71	+/-0.04	0.64	+/-0.05	0.57	+/-0.03	84.2	+/-6.0
				SAM-T99sec	75.2	+/-1.6	70.0	+/-2.5	1.9	+/-0.4	0.32	+/-0.02	0.69	+/-0.04	0.63	+/-0.04	0.55	+/-0.03	84.2	+/-6.0
				SSpro2	74.4	+/-1.4	67.6	+/-2.5	3.3	+/-0.7	0.33	+/-0.02	0.73	+/-0.04	0.63	+/-0.04	0.59	+/-0.03	81.6	+/-6.4
common 1	38	dssp	2	PHD	71.0	+/-1.9	66.9	+/-2.3	4.4	+/-0.8	0.29	+/-0.02	0.61	+/-0.05	0.52	+/-0.05	0.49	+/-0.03	76.3	+/-7.0
common 1	38	dssp	3	APSSP	68.2	+/-2.0	60.8	+/-3.0	5.3	+/-0.8	0.23	+/-0.03	0.57	+/-0.05	0.48	+/-0.06	0.49	+/-0.03	78.9	+/-6.7
common 1	38	dssp	4	PSSP	63.6	+/-1.7	58.5	+/-2.2	6.0	+/-0.7	0.18	+/-0.02	0.48	+/-0.04	0.38	+/-0.05	0.37	+/-0.03	65.8	+/-7.8

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 2			Sorted alphabetically for identical ranks!		MORE SCORES
common 2	47	dssp	1	JPred	74.8	+/-1.7	71.2	+/-2.9	1.9	+/-0.5	0.34	+/-0.02	0.67	+/-0.04	0.58	+/-0.04	0.55	+/-0.03	78.7	+/-6.0
				PHDpsi	74.1	+/-1.4	69.3	+/-2.0	2.9	+/-0.6	0.33	+/-0.02	0.67	+/-0.04	0.57	+/-0.04	0.53	+/-0.02	83.0	+/-5.5
				PROF_king	75.5	+/-1.2	70.4	+/-2.4	1.7	+/-0.4	0.34	+/-0.02	0.68	+/-0.03	0.60	+/-0.04	0.54	+/-0.02	76.6	+/-6.2
				PROFsec	75.3	+/-1.4	72.8	+/-2.0	2.5	+/-0.6	0.34	+/-0.02	0.70	+/-0.04	0.63	+/-0.04	0.56	+/-0.02	80.9	+/-5.8
				PSIpred	77.0	+/-1.3	74.5	+/-2.2	1.4	+/-0.4	0.38	+/-0.02	0.71	+/-0.03	0.64	+/-0.04	0.57	+/-0.03	85.1	+/-5.2
				SAM-T99sec	76.4	+/-1.4	71.6	+/-2.2	1.7	+/-0.3	0.35	+/-0.02	0.69	+/-0.04	0.63	+/-0.04	0.55	+/-0.03	85.1	+/-5.2
				SSpro2	75.2	+/-1.2	69.1	+/-2.2	3.0	+/-0.6	0.34	+/-0.02	0.73	+/-0.04	0.63	+/-0.04	0.59	+/-0.02	80.9	+/-5.8
common 2	47	dssp	2	PHD	71.2	+/-1.6	66.9	+/-2.0	4.3	+/-0.7	0.29	+/-0.02	0.61	+/-0.04	0.52	+/-0.04	0.49	+/-0.02	76.6	+/-6.2

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 3			Sorted alphabetically for identical ranks!		MORE SCORES
common 3	110	dssp	1	JPred	75.5	+/-0.9	68.4	+/-1.5	1.8	+/-0.3	0.34	+/-0.02	0.67	+/-0.02	0.58	+/-0.03	0.55	+/-0.02	79.1	+/-3.9
				PHDpsi	74.6	+/-0.9	68.2	+/-1.4	2.7	+/-0.3	0.24	+/-0.07	0.67	+/-0.02	0.57	+/-0.03	0.53	+/-0.02	80.9	+/-3.8
				PROF_king	74.3	+/-1.0	68.2	+/-1.5	2.5	+/-0.3	0.32	+/-0.01	0.68	+/-0.02	0.60	+/-0.03	0.54	+/-0.02	82.7	+/-3.6
				PROFsec	76.2	+/-0.9	71.5	+/-1.4	2.2	+/-0.2	0.34	+/-0.01	0.70	+/-0.02	0.63	+/-0.02	0.56	+/-0.02	81.8	+/-3.7
				PSIpred	76.3	+/-1.0	71.3	+/-1.5	2.2	+/-0.3	0.36	+/-0.02	0.71	+/-0.02	0.64	+/-0.03	0.57	+/-0.02	84.5	+/-3.5
				SAM-T99sec	76.2	+/-1.0	70.9	+/-1.4	1.7	+/-0.2	0.35	+/-0.02	0.69	+/-0.02	0.63	+/-0.02	0.55	+/-0.02	83.6	+/-3.5
				SSpro1	75.8	+/-1.0	68.7	+/-1.6	2.2	+/-0.3	0.35	+/-0.02	0.70	+/-0.02	0.61	+/-0.03	0.57	+/-0.02	80.0	+/-3.8
common 3	110	dssp	2	PHD	71.8	+/-1.0	66.8	+/-1.4	3.6	+/-0.4	0.20	+/-0.07	0.61	+/-0.02	0.52	+/-0.03	0.49	+/-0.02	80.9	+/-3.8
common 3	110	dssp	3	PSSP	63.6	+/-1.1	57.8	+/-1.3	6.2	+/-0.5	0.19	+/-0.01	0.48	+/-0.02	0.38	+/-0.03	0.37	+/-0.02	74.5	+/-4.2

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 4			Sorted alphabetically for identical ranks!		MORE SCORES
common 4	126	dssp	1	JPred	75.5	+/-0.9	69.2	+/-1.4	1.7	+/-0.2	0.34	+/-0.01	0.67	+/-0.02	0.58	+/-0.02	0.55	+/-0.02	77.8	+/-3.7
				PHDpsi	74.8	+/-0.8	69.3	+/-1.3	2.6	+/-0.3	0.26	+/-0.07	0.67	+/-0.02	0.57	+/-0.02	0.53	+/-0.01	81.0	+/-3.5
				PROFsec	76.4	+/-0.8	72.0	+/-1.3	2.1	+/-0.2	0.35	+/-0.01	0.70	+/-0.02	0.63	+/-0.02	0.56	+/-0.01	82.5	+/-3.4
				PSIpred	76.4	+/-0.9	72.0	+/-1.4	2.2	+/-0.3	0.36	+/-0.01	0.71	+/-0.02	0.64	+/-0.03	0.57	+/-0.02	84.9	+/-3.2
				SAM-T99sec	76.4	+/-0.9	71.3	+/-1.3	1.7	+/-0.2	0.35	+/-0.01	0.69	+/-0.02	0.63	+/-0.02	0.55	+/-0.02	83.3	+/-3.3
				SSpro1	76.2	+/-0.9	69.7	+/-1.5	2.1	+/-0.3	0.35	+/-0.01	0.70	+/-0.02	0.61	+/-0.02	0.57	+/-0.02	81.0	+/-3.5
common 4	126	dssp	2	PHD	72.2	+/-0.9	67.8	+/-1.3	3.5	+/-0.3	0.22	+/-0.07	0.61	+/-0.02	0.52	+/-0.02	0.49	+/-0.01	81.0	+/-3.5

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 5			Sorted alphabetically for identical ranks!		MORE SCORES
common 5	214	dssp	1	PROFsec	76.3	+/-0.6	72.2	+/-0.9	2.3	+/-0.2	0.35	+/-0.01	0.70	+/-0.01	0.63	+/-0.02	0.56	+/-0.01	80.4	+/-2.7
				PSIpred	76.2	+/-0.7	71.6	+/-1.0	2.4	+/-0.2	0.36	+/-0.01	0.71	+/-0.02	0.64	+/-0.02	0.57	+/-0.01	81.3	+/-2.7
				SSpro1	76.0	+/-0.7	70.4	+/-1.0	2.4	+/-0.2	0.35	+/-0.01	0.70	+/-0.01	0.61	+/-0.02	0.57	+/-0.01	80.8	+/-2.7
common 5	214	dssp	2	JPred	74.6	+/-0.6	69.1	+/-1.0	2.3	+/-0.2	0.33	+/-0.01	0.67	+/-0.02	0.58	+/-0.02	0.55	+/-0.01	76.6	+/-2.9
				PHDpsi	74.4	+/-0.6	69.1	+/-0.9	3.0	+/-0.3	0.28	+/-0.04	0.67	+/-0.01	0.57	+/-0.02	0.53	+/-0.01	78.5	+/-2.8
common 5	214	dssp	3	PHD	71.7	+/-0.7	67.3	+/-0.9	4.0	+/-0.3	0.24	+/-0.04	0.61	+/-0.02	0.52	+/-0.02	0.49	+/-0.01	77.1	+/-2.9

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 6			Sorted alphabetically for identical ranks!		MORE SCORES
common 6	347	dssp	1	PROFsec	76.6	+/-0.5	72.6	+/-0.8	2.4	+/-0.2	0.36	+/-0.01	0.70	+/-0.01	0.63	+/-0.01	0.56	+/-0.01	81.8	+/-2.1
				PSIpred	76.4	+/-0.6	72.1	+/-0.9	2.2	+/-0.2	0.37	+/-0.01	0.71	+/-0.01	0.64	+/-0.02	0.57	+/-0.01	84.2	+/-2.0
common 6	347	dssp	2	PHDpsi	74.4	+/-0.5	69.3	+/-0.8	3.0	+/-0.2	0.29	+/-0.02	0.67	+/-0.01	0.57	+/-0.01	0.53	+/-0.01	80.1	+/-2.1
common 6	347	dssp	3	PHD	71.6	+/-0.6	67.4	+/-0.8	4.2	+/-0.3	0.26	+/-0.02	0.61	+/-0.01	0.52	+/-0.02	0.49	+/-0.01	76.4	+/-2.3