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EVA sec results for: PSIpred month: 2001_02

METHOD about:	../../../doc/explain_methods.html#PX_about_psipred
METHOD url:	PSIpred
TYPE :	sec
NPROT :	1461
NWEEKS :	111
NOTE 1 :	here ALL results obtained for PSIpred in month 2001_02 are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins month 2001_02 1

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE

sec	2001_02	dssp	ALL_proteins:psum	77.9	82	83	69	77	79	74	74.5	76.9	72.5	70.8	2.1	0.41	0.41	0.41	0.72	0.66	0.59	8323.0	5.5	4.9
sec	2001_02	dssp	ALL_proteins:sig	9.9	27	29	33	37	12	12	14.1	22.8	26.0	15.0	3.5	0.20	0.16	0.30	0.22	0.24	0.16	8242.7	6.8	6.0
sec	2001_02	dssp	ALL_proteins:errsig	0.25	0.71	0.76	0.88	0.97	0.32	0.32	0.37	0.59	0.68	0.39	0.09	0.00	0.00	0.00	0.00	0.00	0.00	215.6	0.17	0.15
sec	2001_02	dssp	THIS_month:psum	74.6	72	79	51	54	76	70	69.7	76.3	63.2	66.2	2.6	0.34	0.35	0.33	0.65	0.57	0.53	77.7	6.6	4.5

sec	2001_02	dssp	1cwy:A	75.6	77	87	49	57	81	69	66.9	72	52	64	2.4	0.32	0.32	0.33	0.69	0.46	0.56	100.0	5.0	1.0
sec	2001_02	dssp	1dc1:A	66.4	70	86	47	60	70	44	54.0	53	58	54	3.6	0.24	0.24	0.24	0.54	0.45	0.35	100.0	10.0	3.0
sec	2001_02	dssp	1eg7:A	77.4	85	79	71	65	73	81	71.0	80	72	64	2.9	0.37	0.38	0.37	0.72	0.60	0.60	100.0	2.0	1.0
sec	2001_02	dssp	1egu:A	74.2	73	87	58	80	85	64	67.5	78	62	62	1.9	0.35	0.35	0.37	0.71	0.59	0.54	0.0	5.0	7.0
sec	2001_02	dssp	1eha:A	77.4	81	81	73	55	76	84	69.6	84	60	66	0.7	0.38	0.40	0.37	0.75	0.55	0.55	100.0	0.00	5.0
sec	2001_02	dssp	1ehk:A	58.2	56	91	0	0	66	47	51.4	51	0	52	14.7	0.12	0.16	0.10	0.36	-0.05	0.37	0.0	27.0	17.0
sec	2001_02	dssp	1ehk:C	90.9	88	100	0	0	100	66	100.0	100	100	100	0.0	0.57	0.63	0.51	0.76	1.0	0.76	100.0	9.0	0.00
sec	2001_02	dssp	1evy:A	80.2	85	85	79	70	73	77	82.6	85	87	76	2.0	0.41	0.42	0.41	0.71	0.70	0.61	100.0	0.00	1.0
sec	2001_02	dssp	1eyr:A	76.9	75	85	64	79	84	70	76.7	80	66	79	1.3	0.39	0.38	0.40	0.72	0.64	0.57	0.0	3.0	4.0
sec	2001_02	dssp	1f32:A	60.7	60	67	62	75	59	45	48.2	48	56	40	4.2	0.22	0.23	0.23	0.43	0.57	0.25	100.0	4.0	5.0
sec	2001_02	dssp	1fgu:A	79.3	56	92	84	82	83	73	87.0	70	97	83	0.8	0.42	0.40	0.44	0.67	0.72	0.60	100.0	6.0	1.0
sec	2001_02	dssp	1fiu:A	63.6	61	77	67	40	64	63	61.0	61	64	59	6.2	0.19	0.20	0.18	0.47	0.43	0.38	0.0	9.0	8.0
sec	2001_02	dssp	1fkm:A	80.7	81	91	0	0	80	62	80.0	80	0	80	1.5	0.27	0.30	0.26	0.57	-0.00	0.58	100.0	8.0	0.00
sec	2001_02	dssp	1fqj:C	76.3	60	100	0	0	86	83	78.9	66	100	87	5.2	0.38	0.44	0.33	0.68	1.0	0.61	100.0	15.0	13.0
sec	2001_02	dssp	1fx2:A	80.9	78	88	84	83	80	73	84.3	85	85	82	0.0	0.49	0.49	0.49	0.74	0.79	0.60	100.0	4.0	0.00
sec	2001_02	dssp	1g47:A	62.9	70	36	21	50	73	75	36.5	70	21	34	4.2	0.10	0.10	0.11	0.39	0.22	0.27	100.0	12.0	11.0
sec	2001_02	dssp	1g8q:A	75.6	66	95	0	0	93	59	67.1	76	100	49	0.0	0.28	0.29	0.27	0.56	1.0	0.56	0.0	20.0	0.00
sec	2001_02	dssp	1g8y:A	85.0	90	90	77	75	82	84	86.9	99	80	79	1.1	0.53	0.54	0.53	0.83	0.71	0.71	100.0	0.00	0.00
sec	2001_02	dssp	1g9r:A	82.5	76	87	95	88	82	75	85.0	79	97	84	0.0	0.53	0.54	0.54	0.70	0.90	0.63	100.0	5.0	1.0
sec	2001_02	dssp	1gcu:A	70.2	75	75	59	81	72	59	63.4	55	74	68	5.4	0.27	0.27	0.28	0.57	0.60	0.47	0.0	0.00	7.0
sec	2001_02	dssp	1h8r:A	69.2	82	64	67	63	61	76	66.8	78	66	60	1.5	0.28	0.29	0.28	0.58	0.57	0.42	100.0	8.0	1.0
sec	2001_02	dssp	1how:A	78.1	77	86	72	78	81	71	78.3	90	79	68	0.6	0.41	0.41	0.42	0.72	0.69	0.57	100.0	3.0	1.0
sec	2001_02	dssp	1hqc:A	75.2	93	68	52	82	63	85	68.2	84	55	58	2.8	0.33	0.32	0.36	0.62	0.62	0.56	100.0	15.0	4.0
sec	2001_02	dssp	1hqm:E	71.4	78	69	0	0	69	93	61.3	73	0	58	7.1	0.32	0.36	0.28	0.55	-0.05	0.60	100.0	5.0	10.0
sec	2001_02	dssp	1hqo:A	85.5	85	94	84	80	85	74	82.1	82	89	79	0.0	0.52	0.53	0.51	0.77	0.80	0.68	100.0	5.0	0.00
sec	2001_02	dssp	1i1i:P	84.1	88	89	64	82	80	76	78.8	83	66	73	0.1	0.45	0.44	0.46	0.73	0.71	0.65	100.0	0.00	1.0
sec	2001_02	dssp	1i25:A	56.8	0	0	60	33	55	78	28.6	100	23	30	0.0	0.01	0.02	0.01	1.0	0.13	0.13	100.0	0.00	21.0

sec	2001_02	dssp	THIS_month:psum	74.6	72	79	51	54	76	70	69.7	76.3	63.2	66.2	2.6	0.34	0.35	0.33	0.65	0.57	0.53	77.7	6.6	4.5

sec	2001_02	dssp	ALL_proteins:psum	77.9	82	83	69	77	79	74	74.5	76.9	72.5	70.8	2.1	0.41	0.41	0.41	0.72	0.66	0.59	8323.0	5.5	4.9
sec	2001_02	dssp	ALL_proteins:sig	9.9	27	29	33	37	12	12	14.1	22.8	26.0	15.0	3.5	0.20	0.16	0.30	0.22	0.24	0.16	8242.7	6.8	6.0
sec	2001_02	dssp	ALL_proteins:errsig	0.25	0.71	0.76	0.88	0.97	0.32	0.32	0.37	0.59	0.68	0.39	0.09	0.00	0.00	0.00	0.00	0.00	0.00	215.6	0.17	0.15

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

Last update: 2001_02
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

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