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EVA sec results for: PSIpred month: 2001_07

METHOD about:	../../../doc/explain_methods.html#PX_about_psipred
METHOD url:	PSIpred
TYPE :	sec
NPROT :	1461
NWEEKS :	111
NOTE 1 :	here ALL results obtained for PSIpred in month 2001_07 are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins month 2001_07 1

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE

sec	2001_07	dssp	ALL_proteins:psum	77.9	82	83	69	77	79	74	74.5	76.9	72.5	70.8	2.1	0.41	0.41	0.41	0.72	0.66	0.59	8323.0	5.5	4.9
sec	2001_07	dssp	ALL_proteins:sig	9.9	27	29	33	37	12	12	14.1	22.8	26.0	15.0	3.5	0.20	0.16	0.30	0.22	0.24	0.16	8242.7	6.8	6.0
sec	2001_07	dssp	ALL_proteins:errsig	0.25	0.71	0.76	0.88	0.97	0.32	0.32	0.37	0.59	0.68	0.39	0.09	0.00	0.00	0.00	0.00	0.00	0.00	215.6	0.17	0.15
sec	2001_07	dssp	THIS_month:psum	76.8	75	82	49	54	80	71	73.3	76.5	68.4	66.6	2.8	0.40	0.40	0.39	0.64	0.70	0.57	91.6	8.5	4.9

sec	2001_07	dssp	1dcj:A	95.1	100	100	100	83	89	100	100.0	100	100	100	0.0	0.86	0.87	0.85	1.0	0.88	0.90	100.0	0.00	4.0
sec	2001_07	dssp	1e44:B	63.5	18	33	23	100	94	62	26.4	11	30	27	1.0	0.15	0.11	0.21	0.17	0.41	0.27	100.0	5.0	23.0
sec	2001_07	dssp	1faz:A	64.8	48	94	0	0	93	56	60.4	48	100	85	6.5	0.20	0.23	0.18	0.45	1.0	0.51	0.0	31.0	7.0
sec	2001_07	dssp	1g7o:A	80.5	82	87	81	65	77	73	79.4	77	93	81	1.8	0.38	0.39	0.37	0.66	0.70	0.61	100.0	3.0	1.0
sec	2001_07	dssp	1gc5:A	76.2	84	87	70	68	68	66	80.8	93	65	72	1.4	0.38	0.38	0.38	0.73	0.61	0.50	100.0	1.0	0.00
sec	2001_07	dssp	1h5p:A	71.6	41	85	81	66	86	70	65.6	49	86	65	5.2	0.30	0.29	0.32	0.49	0.64	0.55	100.0	15.0	5.0
sec	2001_07	dssp	1hq0:A	61.0	40	64	51	60	78	60	59.4	40	60	66	7.4	0.13	0.13	0.14	0.43	0.31	0.39	100.0	6.0	5.0
sec	2001_07	dssp	1hr6:A	84.7	92	88	71	83	81	80	81.7	92	80	71	0.0	0.54	0.54	0.55	0.83	0.72	0.68	100.0	1.0	2.0
sec	2001_07	dssp	1hr7:A	84.9	92	88	72	83	81	80	82.2	92	81	71	0.0	0.54	0.54	0.55	0.83	0.73	0.68	100.0	1.0	2.0
sec	2001_07	dssp	1hr8:A	88.5	92	92	80	87	88	84	88.8	92	85	87	0.0	0.62	0.62	0.63	0.87	0.80	0.76	100.0	0.00	1.0
sec	2001_07	dssp	1hr9:A	88.5	92	92	82	87	87	85	89.3	92	87	87	0.0	0.62	0.62	0.62	0.86	0.81	0.76	100.0	0.00	1.0
sec	2001_07	dssp	1hzg:A	60.7	40	64	51	59	77	60	59.4	40	60	66	7.4	0.13	0.12	0.14	0.43	0.30	0.38	100.0	6.0	5.0
sec	2001_07	dssp	1i3j:A	74.0	70	78	81	40	74	86	64.9	74	76	58	5.2	0.31	0.34	0.30	0.63	0.50	0.59	100.0	3.0	11.0
sec	2001_07	dssp	1ijx:A	78.4	82	89	8	33	88	73	58.9	79	8	52	0.0	0.39	0.36	0.44	0.76	0.12	0.57	100.0	3.0	7.0
sec	2001_07	dssp	1ijy:A	86.1	88	93	14	33	92	82	79.3	94	14	74	0.0	0.52	0.49	0.55	0.84	0.18	0.72	100.0	2.0	3.0
sec	2001_07	dssp	1j8f:A	66.7	69	66	100	100	52	56	71.5	76	100	56	0.0	0.39	0.39	0.39	0.33	1.0	0.28	100.0	2.0	0.00
sec	2001_07	dssp	1jc5:A	85.5	100	90	84	81	80	86	84.8	100	78	84	0.0	0.60	0.61	0.59	0.93	0.73	0.70	100.0	2.0	1.0
sec	2001_07	dssp	1jei:A	73.6	90	60	0	0	63	91	76.8	90	100	70	0.0	0.22	0.23	0.22	0.52	1.0	0.52	100.0	18.0	0.00
sec	2001_07	dssp	1jek:A	87.5	86	100	0	0	100	28	96.5	100	100	29	0.0	0.33	0.47	0.20	0.49	1.0	0.49	100.0	12.0	0.00
sec	2001_07	dssp	1jek:B	47.1	43	100	0	0	100	18	31.4	31	100	37	26.4	0.18	0.31	0.06	0.20	1.0	0.36	100.0	52.0	26.0
sec	2001_07	dssp	1jfi:A	76.7	100	74	0	0	40	88	77.6	100	0	42	1.6	0.32	0.23	0.41	0.55	1.0	0.49	100.0	21.0	3.0
sec	2001_07	dssp	1jfi:B	92.6	93	98	0	0	96	76	96.0	100	0	87	0.7	0.58	0.58	0.59	0.81	1.0	0.81	100.0	3.0	1.0
sec	2001_07	dssp	1jfy:A	73.4	98	70	50	84	60	74	71.4	88	57	61	4.1	0.37	0.35	0.40	0.69	0.58	0.50	0.0	16.0	9.0
sec	2001_07	dssp	1jg8:A	81.6	82	89	77	90	82	70	77.9	80	83	71	0.0	0.49	0.49	0.50	0.74	0.80	0.61	100.0	3.0	2.0

sec	2001_07	dssp	THIS_month:psum	76.8	75	82	49	54	80	71	73.3	76.5	68.4	66.6	2.8	0.40	0.40	0.39	0.64	0.70	0.57	91.6	8.5	4.9

sec	2001_07	dssp	ALL_proteins:psum	77.9	82	83	69	77	79	74	74.5	76.9	72.5	70.8	2.1	0.41	0.41	0.41	0.72	0.66	0.59	8323.0	5.5	4.9
sec	2001_07	dssp	ALL_proteins:sig	9.9	27	29	33	37	12	12	14.1	22.8	26.0	15.0	3.5	0.20	0.16	0.30	0.22	0.24	0.16	8242.7	6.8	6.0
sec	2001_07	dssp	ALL_proteins:errsig	0.25	0.71	0.76	0.88	0.97	0.32	0.32	0.37	0.59	0.68	0.39	0.09	0.00	0.00	0.00	0.00	0.00	0.00	215.6	0.17	0.15

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

Last update: 2001_07
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

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