Home - Secondary structure Comparative modelling Contacts Threading - search - FTP - Mirrors - Bottom Explain scores

EVA sec results for: SSpro2 month: 2001_08

METHOD about:	../../../doc/explain_methods.html#PX_about_sspro2
METHOD url:	SSpro2
TYPE :	sec
NPROT :	1348
NWEEKS :	71
NOTE 1 :	here ALL results obtained for SSpro2 in month 2001_08 are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins month 2001_08 1

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE

sec	2001_08	dssp	ALL_proteins:psum	76.8	81	83	65	76	80	73	71.9	74.8	70.5	69.4	2.1	0.38	0.38	0.39	0.72	0.62	0.58	8167.6	5.3	5.5
sec	2001_08	dssp	ALL_proteins:sig	9.5	28	28	30	35	11	11	13.8	24.4	24.8	14.1	3.7	0.19	0.15	0.30	0.21	0.23	0.15	8089.0	6.8	6.5
sec	2001_08	dssp	ALL_proteins:errsig	0.25	0.77	0.77	0.82	0.97	0.31	0.30	0.37	0.66	0.67	0.38	0.10	0.00	0.00	0.00	0.00	0.00	0.00	220.3	0.18	0.18
sec	2001_08	dssp	THIS_month:psum	76.8	76	73	51	59	75	75	71.7	75.0	69.9	67.8	2.4	0.38	0.38	0.38	0.64	0.63	0.56	82.6	4.8	4.6

sec	2001_08	dssp	1e5r:A	70.0	76	76	80	57	58	70	62.6	57	75	68	3.3	0.35	0.36	0.34	0.59	0.59	0.43	100.0	0.00	6.0
sec	2001_08	dssp	1e5s:A	70.0	76	76	80	57	58	70	62.6	57	75	68	3.3	0.35	0.36	0.34	0.59	0.59	0.43	100.0	0.00	6.0
sec	2001_08	dssp	1e6f:A	84.5	16	100	84	88	90	81	82.7	16	87	84	0.0	0.45	0.41	0.49	0.40	0.76	0.69	100.0	3.0	2.0
sec	2001_08	dssp	1e89:A	81.7	87	79	75	92	78	79	76.4	78	91	68	1.1	0.47	0.47	0.48	0.71	0.80	0.64	100.0	3.0	3.0
sec	2001_08	dssp	1fg3:A	82.5	89	81	85	82	75	83	77.7	88	91	67	0.0	0.50	0.50	0.50	0.74	0.81	0.64	100.0	3.0	0.00
sec	2001_08	dssp	1fm2:B	73.5	78	79	53	83	83	67	69.3	80	63	66	0.9	0.35	0.34	0.36	0.71	0.57	0.50	100.0	0.00	10.0
sec	2001_08	dssp	1g2r:A	80.9	86	91	72	65	78	78	74.0	69	90	73	2.1	0.48	0.49	0.48	0.82	0.60	0.64	0.0	2.0	2.0
sec	2001_08	dssp	1g8p:A	81.6	80	93	73	82	86	68	80.4	85	86	69	0.6	0.47	0.47	0.47	0.74	0.74	0.63	100.0	7.0	1.0
sec	2001_08	dssp	1h70:A	76.9	84	81	73	71	73	76	72.9	84	74	65	1.1	0.40	0.40	0.40	0.75	0.63	0.55	0.0	1.0	0.00
sec	2001_08	dssp	1h75:A	90.8	96	100	94	76	83	92	96.6	100	96	93	0.0	0.74	0.75	0.74	0.97	0.79	0.80	100.0	1.0	5.0
sec	2001_08	dssp	1h7y:A	83.3	86	77	87	76	79	91	81.9	71	86	87	2.9	0.48	0.50	0.48	0.74	0.75	0.73	100.0	2.0	3.0
sec	2001_08	dssp	1hi9:A	82.8	93	84	73	79	80	83	78.4	90	84	69	1.8	0.49	0.50	0.50	0.83	0.69	0.68	100.0	3.0	1.0
sec	2001_08	dssp	1hqb:A	80.0	100	73	0	0	65	100	63.6	100	100	49	0.0	0.46	0.52	0.42	0.73	1.0	0.66	100.0	14.0	5.0
sec	2001_08	dssp	1hy9:A	73.2	0	0	40	80	83	81	55.4	100	45	58	0.0	0.19	0.21	0.17	1.0	0.48	0.24	100.0	9.0	12.0
sec	2001_08	dssp	1i19:A	70.0	71	59	50	67	79	76	67.3	81	55	67	6.9	0.22	0.23	0.23	0.53	0.46	0.53	100.0	4.0	6.0
sec	2001_08	dssp	1i42:A	86.5	92	81	84	84	86	89	68.1	100	92	55	0.0	0.56	0.57	0.55	0.84	0.77	0.72	100.0	2.0	0.00
sec	2001_08	dssp	1i5k:C	88.5	85	100	0	0	100	62	67.0	64	100	90	0.0	0.52	0.58	0.46	0.73	1.0	0.73	100.0	11.0	0.00
sec	2001_08	dssp	1i7c:A	77.8	86	80	64	95	86	67	79.6	88	83	72	0.0	0.48	0.47	0.49	0.78	0.69	0.57	100.0	1.0	12.0
sec	2001_08	dssp	1i7m:A	75.0	86	86	56	88	83	62	73.4	91	71	62	0.0	0.45	0.44	0.46	0.81	0.60	0.51	100.0	0.00	12.0
sec	2001_08	dssp	1i8n:A	68.5	62	100	46	68	87	63	56.3	62	50	58	2.2	0.31	0.28	0.34	0.75	0.38	0.45	100.0	6.0	11.0
sec	2001_08	dssp	1ic3:A	67.4	91	58	57	66	58	77	74.5	94	65	67	3.1	0.27	0.27	0.27	0.60	0.52	0.42	100.0	15.0	3.0
sec	2001_08	dssp	1ihr:A	75.3	100	70	64	96	79	61	87.4	100	87	81	1.3	0.47	0.49	0.46	0.80	0.65	0.51	100.0	6.0	16.0
sec	2001_08	dssp	1ip9:A	67.1	66	66	61	56	69	73	65.7	90	58	59	4.7	0.26	0.26	0.26	0.55	0.44	0.43	100.0	0.00	2.0
sec	2001_08	dssp	1ipg:A	68.2	66	66	63	60	71	73	68.3	90	67	60	4.7	0.27	0.27	0.27	0.55	0.48	0.45	100.0	0.00	1.0
sec	2001_08	dssp	1j7l:A	83.3	93	85	56	90	86	78	83.9	94	71	80	1.5	0.50	0.49	0.53	0.82	0.67	0.69	100.0	3.0	7.0
sec	2001_08	dssp	1jb0:C	66.2	7	33	64	52	82	73	57.2	7	62	66	3.7	0.12	0.11	0.14	0.09	0.45	0.33	100.0	12.0	5.0
sec	2001_08	dssp	1jb0:D	66.7	48	46	46	64	83	73	61.6	46	56	69	8.6	0.17	0.17	0.18	0.35	0.40	0.50	100.0	0.00	7.0
sec	2001_08	dssp	1jb0:F	68.8	74	80	28	25	66	60	52.9	58	7	47	2.1	0.15	0.16	0.15	0.48	0.22	0.39	0.0	4.0	0.00
sec	2001_08	dssp	1jb0:I	71.1	88	75	0	0	41	62	54.3	60	0	37	2.6	0.18	0.17	0.20	0.38	-0.02	0.34	100.0	10.0	0.00
sec	2001_08	dssp	1jb0:J	78.0	92	78	0	0	50	75	61.4	83	0	34	2.4	0.19	0.16	0.23	0.45	1.0	0.49	100.0	12.0	2.0
sec	2001_08	dssp	1jb0:K	78.1	93	71	0	0	62	90	92.2	100	100	84	0.0	0.29	0.28	0.30	0.59	1.0	0.59	100.0	15.0	0.00
sec	2001_08	dssp	1jb0:L	64.2	65	85	0	0	71	47	44.9	44	0	50	5.9	0.14	0.16	0.14	0.39	-0.05	0.37	0.0	16.0	2.0
sec	2001_08	dssp	1jb0:M	100.0	100	100	0	0	100	100	100.0	100	100	100	0.0	1.0	1.0	1.0	1.0	1.0	1.0	100.0	0.00	0.00
sec	2001_08	dssp	1jb0:X	86.2	100	84	0	0	50	100	93.1	100	100	75	0.0	0.44	0.36	0.52	0.64	1.0	0.64	100.0	13.0	0.00
sec	2001_08	dssp	1jb3:A	57.5	64	45	50	70	60	59	51.9	52	54	49	11.8	0.12	0.13	0.13	0.35	0.40	0.34	0.0	10.0	11.0
sec	2001_08	dssp	1jc7:A	59.7	66	45	49	71	66	64	55.0	51	54	57	13.9	0.14	0.15	0.14	0.37	0.39	0.44	0.0	10.0	12.0
sec	2001_08	dssp	1jeq:A	80.7	89	82	68	86	78	76	80.0	82	85	74	0.8	0.46	0.46	0.47	0.76	0.72	0.61	0.0	3.0	4.0
sec	2001_08	dssp	1jeq:B	84.6	86	86	77	90	86	81	86.4	93	91	79	0.5	0.53	0.53	0.54	0.79	0.79	0.70	100.0	0.00	2.0
sec	2001_08	dssp	1jey:B	83.0	90	84	67	93	85	78	87.8	94	82	85	0.0	0.53	0.52	0.55	0.81	0.74	0.66	0.0	2.0	6.0
sec	2001_08	dssp	1jj2:G	86.2	91	91	0	0	66	66	67.8	70	100	58	0.0	0.28	0.28	0.28	0.57	1.0	0.57	100.0	0.00	0.00
sec	2001_08	dssp	1jjd:A	73.1	0	0	33	40	87	83	71.6	0	33	85	3.8	0.15	0.14	0.17	-0.09	0.29	0.26	100.0	1.0	1.0
sec	2001_08	dssp	1jjy:A	84.5	88	89	71	80	82	78	77.8	77	81	77	0.7	0.48	0.48	0.48	0.77	0.73	0.68	100.0	0.00	1.0
sec	2001_08	dssp	1job:A	68.5	80	54	50	85	76	70	65.9	62	58	75	8.0	0.28	0.28	0.29	0.54	0.54	0.52	100.0	10.0	14.0
sec	2001_08	dssp	1jod:A	66.9	81	57	48	84	75	65	66.5	66	62	70	7.5	0.26	0.26	0.27	0.56	0.51	0.48	100.0	10.0	15.0
sec	2001_08	dssp	1jp4:A	85.9	97	97	41	71	86	70	81.7	100	54	65	0.0	0.64	0.62	0.67	0.94	0.48	0.68	100.0	0.00	6.0
sec	2001_08	dssp	1jru:A	85.4	80	75	88	88	85	87	64.4	80	96	51	0.0	0.53	0.54	0.53	0.72	0.83	0.70	100.0	1.0	0.00

sec	2001_08	dssp	THIS_month:psum	76.8	76	73	51	59	75	75	71.7	75.0	69.9	67.8	2.4	0.38	0.38	0.38	0.64	0.63	0.56	82.6	4.8	4.6

sec	2001_08	dssp	ALL_proteins:psum	76.8	81	83	65	76	80	73	71.9	74.8	70.5	69.4	2.1	0.38	0.38	0.39	0.72	0.62	0.58	8167.6	5.3	5.5
sec	2001_08	dssp	ALL_proteins:sig	9.5	28	28	30	35	11	11	13.8	24.4	24.8	14.1	3.7	0.19	0.15	0.30	0.21	0.23	0.15	8089.0	6.8	6.5
sec	2001_08	dssp	ALL_proteins:errsig	0.25	0.77	0.77	0.82	0.97	0.31	0.30	0.37	0.66	0.67	0.38	0.10	0.00	0.00	0.00	0.00	0.00	0.00	220.3	0.18	0.18

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

Last update: 2001_08
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

Explain scores - Home - Secondary structure Comparative modelling Contacts Threading - search - FTP - Mirrors - Top