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EVA sec results for: PSIpred month: 2002_03

METHOD about:	../../../doc/explain_methods.html#PX_about_psipred
METHOD url:	PSIpred
TYPE :	sec
NPROT :	1461
NWEEKS :	111
NOTE 1 :	here ALL results obtained for PSIpred in month 2002_03 are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins month 2002_03 1

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE

sec	2002_03	dssp	ALL_proteins:psum	77.9	82	83	69	77	79	74	74.5	76.9	72.5	70.8	2.1	0.41	0.41	0.41	0.72	0.66	0.59	8323.0	5.5	4.9
sec	2002_03	dssp	ALL_proteins:sig	9.9	27	29	33	37	12	12	14.1	22.8	26.0	15.0	3.5	0.20	0.16	0.30	0.22	0.24	0.16	8242.7	6.8	6.0
sec	2002_03	dssp	ALL_proteins:errsig	0.25	0.71	0.76	0.88	0.97	0.32	0.32	0.37	0.59	0.68	0.39	0.09	0.00	0.00	0.00	0.00	0.00	0.00	215.6	0.17	0.15
sec	2002_03	dssp	THIS_month:psum	75.5	67	62	60	69	78	72	75.0	71.2	72.5	72.2	4.1	0.38	0.38	0.38	0.63	0.62	0.58	78.2	7.5	7.3

sec	2002_03	dssp	1gk7:A	94.9	97	97	0	0	75	75	98.7	100	100	87	0.0	0.47	0.47	0.47	0.72	1.0	0.72	100.0	0.00	0.00
sec	2002_03	dssp	1i60:A	80.6	83	90	68	85	82	68	79.6	86	76	72	0.3	0.46	0.46	0.47	0.76	0.72	0.60	100.0	3.0	3.0
sec	2002_03	dssp	1ib8:A	82.3	100	71	82	87	72	87	91.6	100	94	84	1.8	0.53	0.54	0.52	0.79	0.76	0.67	0.0	9.0	1.0
sec	2002_03	dssp	1j4w:A	79.7	74	100	76	88	100	51	92.2	89	100	87	2.7	0.53	0.55	0.51	0.76	0.76	0.63	100.0	13.0	4.0
sec	2002_03	dssp	1j8c:A	88.3	100	62	74	95	91	96	93.2	100	81	96	4.8	0.62	0.64	0.61	0.74	0.79	0.86	100.0	8.0	5.0
sec	2002_03	dssp	1jjg:A	77.5	100	50	87	68	70	91	69.6	75	90	62	0.0	0.39	0.43	0.36	0.68	0.65	0.57	100.0	5.0	8.0
sec	2002_03	dssp	1jmr:B	83.0	96	81	77	86	67	83	84.3	98	91	64	1.6	0.50	0.49	0.52	0.77	0.77	0.64	100.0	8.0	2.0
sec	2002_03	dssp	1jo8:A	86.2	0	0	88	88	93	84	70.4	0	86	63	1.7	0.48	0.43	0.54	1.0	0.79	0.76	100.0	5.0	0.00
sec	2002_03	dssp	1k11:A	54.1	55	29	43	84	68	56	64.4	83	55	67	18.3	0.16	0.17	0.16	0.20	0.40	0.41	0.0	16.0	23.0
sec	2002_03	dssp	1k24:A	45.4	0	0	34	90	72	46	42.3	0	36	62	21.2	0.09	0.12	0.07	-0.06	0.28	0.33	0.0	26.0	42.0
sec	2002_03	dssp	1k8h:A	71.4	70	57	68	73	73	77	69.2	81	65	67	6.7	0.26	0.27	0.27	0.53	0.57	0.55	100.0	4.0	2.0
sec	2002_03	dssp	1kg0:C	73.5	80	85	87	51	67	89	69.5	100	70	65	0.0	0.37	0.39	0.36	0.80	0.53	0.50	100.0	0.00	16.0
sec	2002_03	dssp	1kil:E	95.1	97	97	0	0	80	80	100.0	100	100	100	0.0	0.53	0.53	0.53	0.77	1.0	0.77	100.0	0.00	0.00
sec	2002_03	dssp	1kj6:A	33.3	40	10	23	33	37	62	33.9	30	13	44	15.5	0.02	0.02	0.02	-0.03	0.04	0.03	100.0	33.0	8.0
sec	2002_03	dssp	1kjk:A	79.6	94	94	50	75	85	70	79.7	100	52	79	0.0	0.53	0.51	0.55	0.90	0.51	0.59	100.0	0.00	8.0
sec	2002_03	dssp	1kl9:A	82.0	0	0	85	78	88	85	88.4	0	96	92	4.0	0.38	0.34	0.42	1.0	0.67	0.71	100.0	6.0	4.0
sec	2002_03	dssp	1kqf:B	76.1	74	77	56	73	84	75	72.4	78	70	70	2.0	0.32	0.32	0.34	0.66	0.57	0.56	100.0	1.0	4.0
sec	2002_03	dssp	1kqf:C	75.0	76	91	71	27	68	50	67.1	72	55	46	4.6	0.21	0.24	0.18	0.49	0.41	0.46	0.0	12.0	5.0
sec	2002_03	dssp	1kqr:A	75.0	68	100	70	87	85	59	73.9	81	75	68	0.6	0.36	0.36	0.37	0.81	0.56	0.52	100.0	3.0	11.0
sec	2002_03	dssp	1ktb:A	79.4	78	86	69	81	85	74	77.0	85	71	74	1.2	0.42	0.42	0.43	0.74	0.68	0.61	0.0	3.0	3.0
sec	2002_03	dssp	1kvk:A	67.1	0	0	67	87	91	53	51.3	0	53	61	4.1	0.24	0.22	0.28	-0.04	0.55	0.50	100.0	10.0	12.0
sec	2002_03	dssp	1kzy:C	65.9	74	58	34	63	71	71	60.3	80	39	56	4.7	0.18	0.17	0.19	0.48	0.39	0.41	100.0	8.0	8.0
sec	2002_03	dssp	1l1c:A	92.7	100	100	90	90	93	93	98.2	100	100	96	0.0	0.70	0.70	0.70	1.0	0.84	0.85	100.0	0.00	0.00

sec	2002_03	dssp	THIS_month:psum	75.5	67	62	60	69	78	72	75.0	71.2	72.5	72.2	4.1	0.38	0.38	0.38	0.63	0.62	0.58	78.2	7.5	7.3

sec	2002_03	dssp	ALL_proteins:psum	77.9	82	83	69	77	79	74	74.5	76.9	72.5	70.8	2.1	0.41	0.41	0.41	0.72	0.66	0.59	8323.0	5.5	4.9
sec	2002_03	dssp	ALL_proteins:sig	9.9	27	29	33	37	12	12	14.1	22.8	26.0	15.0	3.5	0.20	0.16	0.30	0.22	0.24	0.16	8242.7	6.8	6.0
sec	2002_03	dssp	ALL_proteins:errsig	0.25	0.71	0.76	0.88	0.97	0.32	0.32	0.37	0.59	0.68	0.39	0.09	0.00	0.00	0.00	0.00	0.00	0.00	215.6	0.17	0.15

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

Last update: 2002_03
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

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