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EVA sec results for: PSIpred month: 2002_05

METHOD about:	../../../doc/explain_methods.html#PX_about_psipred
METHOD url:	PSIpred
TYPE :	sec
NPROT :	1461
NWEEKS :	111
NOTE 1 :	here ALL results obtained for PSIpred in month 2002_05 are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins month 2002_05 1

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE

sec	2002_05	dssp	ALL_proteins:psum	77.9	82	83	69	77	79	74	74.5	76.9	72.5	70.8	2.1	0.41	0.41	0.41	0.72	0.66	0.59	8323.0	5.5	4.9
sec	2002_05	dssp	ALL_proteins:sig	9.9	27	29	33	37	12	12	14.1	22.8	26.0	15.0	3.5	0.20	0.16	0.30	0.22	0.24	0.16	8242.7	6.8	6.0
sec	2002_05	dssp	ALL_proteins:errsig	0.25	0.71	0.76	0.88	0.97	0.32	0.32	0.37	0.59	0.68	0.39	0.09	0.00	0.00	0.00	0.00	0.00	0.00	215.6	0.17	0.15
sec	2002_05	dssp	THIS_month:psum	74.2	69	72	47	52	75	71	70.7	70.9	75.9	68.6	2.5	0.33	0.33	0.33	0.57	0.69	0.50	86.8	6.4	5.5

sec	2002_05	dssp	1cix:A	61.4	0	0	0	0	81	72	41.4	100	0	52	2.2	0.02	0.03	0.03	1.0	-0.12	-0.10	100.0	11.0	20.0
sec	2002_05	dssp	1go4:G	89.0	92	92	75	85	80	77	76.7	74	75	88	2.0	0.53	0.53	0.54	0.75	0.78	0.73	100.0	0.00	0.00
sec	2002_05	dssp	1hxv:A	81.2	66	66	87	81	80	83	83.5	66	91	81	0.0	0.43	0.43	0.43	0.62	0.75	0.62	100.0	0.00	2.0
sec	2002_05	dssp	1i36:A	85.2	91	91	88	79	70	75	87.6	90	94	78	0.0	0.53	0.54	0.54	0.79	0.81	0.62	100.0	0.00	1.0
sec	2002_05	dssp	1iko:P	79.4	57	80	72	72	86	82	81.1	60	76	86	2.1	0.34	0.33	0.35	0.64	0.59	0.61	100.0	2.0	0.00
sec	2002_05	dssp	1ir6:A	82.9	93	83	75	79	71	83	85.4	89	82	81	0.5	0.47	0.47	0.48	0.75	0.74	0.64	100.0	6.0	0.00
sec	2002_05	dssp	1jjv:A	93.1	96	89	100	100	86	95	100.0	100	100	100	0.0	0.77	0.77	0.78	0.86	1.0	0.85	100.0	3.0	0.00
sec	2002_05	dssp	1jni:A	66.1	14	66	50	20	84	75	65.6	17	50	82	3.2	0.06	0.06	0.07	0.23	0.24	0.19	100.0	17.0	9.0
sec	2002_05	dssp	1jsx:A	91.4	100	89	0	0	66	100	97.1	100	100	88	0.0	0.57	0.52	0.64	0.77	1.0	0.77	100.0	8.0	0.00
sec	2002_05	dssp	1juh:B	68.2	60	20	59	90	76	73	72.1	60	67	78	6.4	0.24	0.26	0.23	0.26	0.60	0.49	100.0	12.0	14.0
sec	2002_05	dssp	1k3r:B	76.5	78	80	77	69	75	78	81.4	83	80	81	1.1	0.37	0.38	0.37	0.71	0.64	0.55	100.0	0.00	2.0
sec	2002_05	dssp	1k45:A	70.2	50	12	67	84	74	77	66.8	20	72	64	6.5	0.22	0.25	0.20	0.18	0.57	0.53	0.0	11.0	9.0
sec	2002_05	dssp	1kjy:B	60.0	64	57	0	0	55	62	64.0	67	100	61	0.0	0.03	0.03	0.03	0.20	1.0	0.20	100.0	5.0	0.00
sec	2002_05	dssp	1kpp:A	74.3	81	81	63	57	75	78	66.7	68	45	74	1.3	0.34	0.35	0.35	0.74	0.49	0.51	100.0	0.00	2.0
sec	2002_05	dssp	1kr7:A	92.7	93	96	0	0	90	84	99.5	100	100	98	0.0	0.57	0.59	0.57	0.82	1.0	0.82	100.0	1.0	0.00
sec	2002_05	dssp	1ksh:B	70.0	87	60	60	95	80	53	81.6	96	83	69	4.5	0.33	0.35	0.31	0.67	0.57	0.48	100.0	6.0	20.0
sec	2002_05	dssp	1ktg:A	81.0	82	84	71	95	94	66	80.4	92	72	84	4.3	0.49	0.50	0.49	0.76	0.72	0.69	100.0	0.00	10.0
sec	2002_05	dssp	1kuu:A	78.7	68	82	79	84	83	72	81.4	75	89	76	1.4	0.42	0.41	0.43	0.69	0.71	0.60	100.0	3.0	2.0
sec	2002_05	dssp	1kv4:A	71.4	63	95	0	0	91	64	56.5	47	100	100	11.9	0.32	0.40	0.25	0.49	1.0	0.65	100.0	23.0	11.0
sec	2002_05	dssp	1kyq:B	73.3	84	69	70	89	61	71	72.5	79	81	60	2.1	0.34	0.33	0.35	0.56	0.75	0.47	100.0	9.0	3.0
sec	2002_05	dssp	1l1d:B	75.5	69	90	52	80	92	69	55.7	62	48	56	2.0	0.38	0.36	0.41	0.72	0.55	0.58	100.0	6.0	9.0
sec	2002_05	dssp	1l1s:A	91.9	94	92	88	96	90	87	96.4	100	92	93	1.8	0.69	0.70	0.70	0.87	0.90	0.84	100.0	0.00	1.0
sec	2002_05	dssp	1ldj:A	89.1	95	90	0	0	71	83	95.2	100	100	81	0.0	0.41	0.40	0.43	0.70	1.0	0.70	100.0	3.0	0.00
sec	2002_05	dssp	1ldj:B	69.3	63	53	65	52	71	82	56.5	49	42	63	2.2	0.21	0.23	0.20	0.52	0.44	0.41	100.0	2.0	5.0
sec	2002_05	dssp	1ldv:A	56.4	18	38	10	33	85	60	7.0	15	2	6	0.7	0.04	0.03	0.05	0.18	0.05	0.00	100.0	7.0	17.0
sec	2002_05	dssp	1lgj:A	60.1	68	70	0	0	45	45	55.6	72	100	32	0.0	0.03	0.04	0.03	0.17	1.0	0.14	100.0	1.0	1.0
sec	2002_05	dssp	1lgo:A	56.8	58	83	0	0	52	50	55.5	64	100	39	9.6	0.07	0.10	0.06	0.34	1.0	0.26	0.0	19.0	18.0
sec	2002_05	dssp	1lgz:A	74.4	68	84	0	0	82	65	60.0	56	100	64	0.0	0.19	0.20	0.20	0.50	1.0	0.50	100.0	10.0	0.00
sec	2002_05	dssp	1lh8:A	56.2	50	90	0	0	75	33	69.0	71	100	60	5.4	0.06	0.08	0.05	0.26	1.0	0.27	0.0	34.0	6.0
sec	2002_05	dssp	1li1:A	66.7	30	25	52	92	88	64	63.4	30	64	69	5.7	0.22	0.22	0.23	0.18	0.56	0.48	100.0	2.0	19.0
sec	2002_05	dssp	1li5:A	77.8	84	87	65	77	76	68	73.0	90	75	54	0.0	0.43	0.43	0.44	0.76	0.64	0.54	100.0	1.0	3.0
sec	2002_05	dssp	1lja:A	71.9	81	79	0	0	48	52	57.2	66	100	37	0.0	0.07	0.07	0.08	0.31	1.0	0.31	100.0	1.0	0.00
sec	2002_05	dssp	1lk8:A	45.4	48	38	25	26	50	59	42.3	50	24	43	11.7	0.01	0.02	0.02	0.12	0.10	0.14	100.0	8.0	0.00
sec	2002_05	dssp	1ll3:A	77.7	81	83	63	83	81	70	73.5	78	68	70	1.7	0.39	0.38	0.40	0.70	0.67	0.58	100.0	1.0	4.0
sec	2002_05	dssp	1ln4:A	88.8	95	100	90	72	81	88	85.9	100	100	69	0.0	0.70	0.71	0.69	0.95	0.74	0.76	0.0	2.0	5.0
sec	2002_05	dssp	1lpl:A	87.4	81	90	90	82	86	90	93.3	100	93	91	0.0	0.56	0.56	0.57	0.84	0.79	0.74	100.0	1.0	3.0
sec	2002_05	dssp	1lr0:A	74.6	65	93	78	94	90	51	66.9	59	95	70	0.7	0.44	0.45	0.44	0.61	0.83	0.53	100.0	16.0	3.0
sec	2002_05	dssp	1lu7:A	55.5	88	66	44	18	30	70	40.3	52	26	31	4.0	0.20	0.21	0.20	0.55	0.15	0.21	0.0	13.0	13.0

sec	2002_05	dssp	THIS_month:psum	74.2	69	72	47	52	75	71	70.7	70.9	75.9	68.6	2.5	0.33	0.33	0.33	0.57	0.69	0.50	86.8	6.4	5.5

sec	2002_05	dssp	ALL_proteins:psum	77.9	82	83	69	77	79	74	74.5	76.9	72.5	70.8	2.1	0.41	0.41	0.41	0.72	0.66	0.59	8323.0	5.5	4.9
sec	2002_05	dssp	ALL_proteins:sig	9.9	27	29	33	37	12	12	14.1	22.8	26.0	15.0	3.5	0.20	0.16	0.30	0.22	0.24	0.16	8242.7	6.8	6.0
sec	2002_05	dssp	ALL_proteins:errsig	0.25	0.71	0.76	0.88	0.97	0.32	0.32	0.37	0.59	0.68	0.39	0.09	0.00	0.00	0.00	0.00	0.00	0.00	215.6	0.17	0.15

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

Last update: 2002_05
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

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