| METHOD about: | ../../doc/explain_methods.html#PX_about_pssp |
| METHOD url: | PSSP |
| METHOD quote: | |
| TYPE : | sec |
| NPROT : | 369 |
| NWEEKS : | 57 |
| AVE_Q3 : | 62.9 |
| AVE_SOV: | 57.4 |
| NOTE 1 : | here ALL results obtained for pssp are given, i.e. NOT those for a common subset! |
| NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
| type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| sec | 2002_06_21 | dssp | psum | 62.8 | 63 | 70 | 54 | 48 | 64 | 61 | 57.4 | 58.3 | 61.3 | 56.9 | 7.1 | 0.17 | 0.19 | 0.16 | 0.47 | 0.38 | 0.37 | 6883.4 | 10.1 | 8.5 |
| sec | 2002_06_21 | dssp | sig | 11.0 | 26 | 30 | 28 | 29 | 13 | 13 | 13.6 | 24.6 | 27.0 | 15.0 | 6.7 | 0.26 | 0.16 | 0.37 | 0.24 | 0.30 | 0.15 | 6824.0 | 10.4 | 8.8 |
| sec | 2002_06_21 | dssp | errsig | 0.57 | 1 | 1 | 1 | 1 | 0.68 | 0.70 | 0.71 | 1.2 | 1.4 | 0.78 | 0.35 | 0.01 | 0.00 | 0.01 | 0.01 | 0.01 | 0.00 | 355.2 | 0.54 | 0.46 |
| Type | Method | Month | Nprot | Average Q3 for month | File with details for month |
|---|---|---|---|---|---|
| sec | pssp | ALL | 369 | 62.9 | |
| sec | pssp | 2000_06 | 3 | 75.8 | old/2000_06_pssp.html |
| sec | pssp | 2000_07 | 28 | 62.5 | old/2000_07_pssp.html |
| sec | pssp | 2000_08 | 16 | 67.0 | old/2000_08_pssp.html |
| sec | pssp | 2000_09 | 24 | 65.1 | old/2000_09_pssp.html |
| sec | pssp | 2000_10 | 33 | 60.6 | old/2000_10_pssp.html |
| sec | pssp | 2000_11 | 33 | 61.6 | old/2000_11_pssp.html |
| sec | pssp | 2000_12 | 38 | 63.0 | old/2000_12_pssp.html |
| sec | pssp | 2001_01 | 24 | 64.7 | old/2001_01_pssp.html |
| sec | pssp | 2001_02 | 27 | 59.6 | old/2001_02_pssp.html |
| sec | pssp | 2001_03 | 36 | 63.1 | old/2001_03_pssp.html |
| sec | pssp | 2001_04 | 11 | 61.6 | old/2001_04_pssp.html |
| sec | pssp | 2001_05 | 12 | 65.7 | old/2001_05_pssp.html |
| sec | pssp | 2001_06 | 16 | 61.4 | old/2001_06_pssp.html |
| sec | pssp | 2001_07 | 14 | 65.1 | old/2001_07_pssp.html |
| sec | pssp | 2001_08 | 44 | 62.7 | old/2001_08_pssp.html |
| sec | pssp | 2001_09 | 25 | 62.9 | old/2001_09_pssp.html |
| sec | pssp | ALL | 369 | 62.9 |
| psum | percentage over all proteins |
| sig | standard deviation |
| errsig | significant difference (to distinguish between two methods) |
| type | prediction type |
| date | date when added [yyyy_mm_dd] |
| sots | standard of truth |
| id | identifier of protein |
| Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
| Q3H%o | correctly predicted helix residues (percentage of helix observed) |
| Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
| Q3E%o | correctly predicted strand residues (percentage of helix observed) |
| Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
| Q3L%o | correctly predicted loop residues (percentage of helix observed) |
| Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
| sov | per segment accuracy (three states) |
| sovH | per segment accuracy for helix residues |
| sovE | per segment accuracy for strand residues |
| sovL | per segment accuracy for non-regular residues |
| BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
| infoO | information index accuracy (percentage of observed) |
| infoP | information index accuracy (percentage of predicted) |
| corrH | Matthews correlation index for helix |
| corrE | Matthews correlation index for strand |
| corrL | Matthews correlation index for loop |
| var | variance over all proteins (1/N-1)*( score(i) - |
| sig | sigma (standard deviation) over all proteins (sqrt[var]) |
| errsig | significant differences ( standard dev / sqrt(Nprot) ) |