EVA: Detailed information for proteins added on: 2000_08_02

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	PDB header	PDB compnd	PDB source	PDB author	id	date
2000_08_02	1f2t	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	REPLICATION	MOLECULE: RAD50 ABC-ATPASE; CHAIN: A; FRAGMENT: N-TERMINAL DOMAIN; ENGINEERED: YES; MOLECULE: RAD50 ABC-ATPASE; CHAIN: B; FRAGMENT: C-TERMINAL DOMAIN; ENGINEERED: YES	PYROCOCCUS FURIOSUS; ARCHAEA; PYROCOCCUS FURIOSUS; ARCHAEA;	K.P.HOPFNER,A.KARCHER,D.S.SHIN,L.CRAIG	1f2t	2000_08_02
2000_08_02	1f0k	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	MOLECULE: UDP-N-ACETYLGLUCOSAMINE-N-ACETYLMURAMYL- (PENTAPEPTIDE) PYROPHOSPHORYL-UNDECAPRENOL N- ACETYLGLUCOSAMINE TRANSFERASE; CHAIN: A, B; SYNONYM: MURG; EC: 2.4.1.-; ENGINEERED: YES	ESCHERICHIA COLI; BACTERIA;	S.HA,D.WALKER,Y.SHI,S.WALKER	1f0k	2000_08_02
2000_08_02	1dkq	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: PHYTASE; CHAIN: A; SYNONYM: PH 2.5 ACID PHOSPHATASE; EC: 3.1.3.2; ENGINEERED: YES; MUTATION: YES	ESCHERICHIA COLI; BACTERIA;	D.LIM,S.GOLOVAN,C.W.FORSBERG,Z.JIA	1dkq	2000_08_02
2000_08_02	1eok	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: ENDO-BETA-N-ACETYLGLUCOSAMINIDASE F3; CHAIN: A; EC: 3.2.1.96; ENGINEERED: YES	FLAVOBACTERIUM MENINGOSEPTICUM; BACTERIA;	C.A.WADDLING,T.H.PLUMMER JR.,A.L.TARENTINO,P.VAN ROEY	1eok	2000_08_02
2000_08_02	1eej	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ISOMERASE	MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN; CHAIN: A, B; SYNONYM: PROTEIN DISULFIDE-ISOMERASE, DSBC; EC: 5.3.4.1; ENGINEERED: YES	ESCHERICHIA COLI; BACTERIA; CELLULAR_LOCATION: PERIPLASM;	A.A.MCCARTHY,P.W.HAEBEL,A.TORRONEN,V.RYBIN,E.N.BAKER, P.METCALF	1eej	2000_08_02
2000_08_02	1ez1	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	MOLECULE: PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE 2; CHAIN: A, B; EC: 2.1.2.-; ENGINEERED: YES	ESCHERICHIA COLI; BACTERIA;	J.B.THODEN,S.FIRESTINE,A.NIXON,S.J.BENKOVIC,H.M.HOLDEN	1ez1	2000_08_02
2000_08_02	1evx	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: INTRON-ENCODED HOMING ENDONUCLEASE I-PPOI; CHAIN: A, B; ENGINEERED: YES	PHYSARUM POLYCEPHALUM; SLIME MOLD;	E.A.GALBURT,M.S.JURICA,B.S.CHEVALIER,D.ERHO,B.L.STODDARD	1evx	2000_08_02
2000_08_02	1c3g	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	CHAPERONE	MOLECULE: HEAT SHOCK PROTEIN 40; CHAIN: A; FRAGMENT: SIS1 C-TERMINAL PEPTIDE-BINDING DOMAIN; ENGINEERED: YES; OTHER_DETAILS: MOLECULAR CHAPERONE	SACCHAROMYCES CEREVISIAE; YEAST;	B.SHA,S.LEE,D.CYR	1c3g	2000_08_02
2000_08_02	1f2t	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	REPLICATION	MOLECULE: RAD50 ABC-ATPASE; CHAIN: A; FRAGMENT: N-TERMINAL DOMAIN; ENGINEERED: YES; MOLECULE: RAD50 ABC-ATPASE; CHAIN: B; FRAGMENT: C-TERMINAL DOMAIN; ENGINEERED: YES	PYROCOCCUS FURIOSUS; ARCHAEA; PYROCOCCUS FURIOSUS; ARCHAEA;	K.P.HOPFNER,A.KARCHER,D.S.SHIN,L.CRAIG	1f2t	2000_08_02

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
PDB header	PDB 'HEADER' field
PDB compnd	PDB 'COMPND' field
PDB source	PDB 'SOURCE' field
PDB author	PDB 'AUTHOR' field