EVA: Detailed information for proteins added on: 2000_09_06

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	PDB header	PDB compnd	PDB source	PDB author	id	date
2000_09_06	1f6y	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	MOLECULE: 5-METHYLTETRAHYDROFOLATE CORRINOID/IRON SULFUR PROTEIN METHYLTRANSFERASE; CHAIN: A, B; ENGINEERED: YES	MOORELLA THERMOACETICA; BACTERIA; STRAIN: ATCC 39073; CELLULAR_LOCATION: CYTOPLASMIC;	T.I.DOUKOV,J.SERAVALLI,J.J.STEZOWSKI,S.W.RAGSDALE	1f6y	2000_09_06
2000_09_06	1f3v	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	APOPTOSIS	MOLECULE: TUMOR NECROSIS FACTOR RECEPTOR TYPE 1 ASSOCIATED DEATH DOMAIN PROTEIN; CHAIN: A; FRAGMENT: N-TERMINAL DOMAIN; SYNONYM: TRADD, TNFR1-ASSOCIATED DEATH DOMAIN PROTEIN; ENGINEERED: YES; MOLECULE: TUMOR NECROSIS FACTOR RECEPTOR-ASSOCIATED PROTEIN; CHAIN: B; FRAGMENT: TRAF DOMAIN; SYNONYM: TRAF2; ENGINEERED: YES	HOMO SAPIENS; HUMAN; HOMO SAPIENS; HUMAN;	Y.C.PARK,H.YE,C.HSIA,D.SEGAL,R.RICH,H.-C.LIOU,D.MYSZKA,H.WU	1f3v	2000_09_06
2000_09_06	1flo	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LIGASE, LYASE/DNA	MOLECULE: FLP RECOMBINASE; CHAIN: A, B, C, D; FRAGMENT: FLP; SYNONYM: SITE-SPECIFIC RECOMBINASE, PROTEIN ABLE; ENGINEERED: YES; MOLECULE: SYMMETRIZED FRT DNA SITES; CHAIN: E, G, I, K; ENGINEERED: YES; OTHER_DETAILS: DNA 13-MER; MOLECULE: SYMMETRIZED FRT DNA SITES; CHAIN: F, H, J, L; ENGINEERED: YES; OTHER_DETAILS: DNA 20-MER	SACCHAROMYCES CEREVISIAE; YEAST; GENE: FLP1; SYNTHETIC: YES; SYNTHETIC: YES	Y.CHEN,U.NARENDRA,L.E.IYPE,M.M.COX,P.A.RICE	1flo	2000_09_06
2000_09_06	1deb	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	STRUCTURAL PROTEIN	MOLECULE: ADENOMATOUS POLYPOSIS COLI PROTEIN; CHAIN: A, B; FRAGMENT: N-TERMINAL COILED COIL DOMAIN; SYNONYM: APC PROTEIN; ENGINEERED: YES	HOMO SAPIENS; HUMAN;	C.L.DAY,T.ALBER	1deb	2000_09_06
2000_09_06	1ezw	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: COENZYME F420-DEPENDENT N5,N10- METHYLENETETRAHYDROMETHANOPTERIN REDUCTASE; CHAIN: A	METHANOPYRUS KANDLERI; ARCHAEA	S.SHIMA,E.WARKENTIN,W.GRABARSE,R.K.THAUER,U.ERMLER	1ezw	2000_09_06
2000_09_06	1eyq	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ISOMERASE	MOLECULE: CHALCONE-FLAVONONE ISOMERASE 1; CHAIN: A, B; SYNONYM: CHALCONE ISOMERASE 1; EC: 5.5.1.6; ENGINEERED: YES	MEDICAGO SATIVA; ALFALFA;	J.M.JEZ,M.E.BOWMAN,R.A.DIXON,J.P.NOEL	1eyq	2000_09_06
2000_09_06	1euj	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	CYTOKINE	MOLECULE: ENDOTHELIAL MONOCYTE ACTIVATING POLYPEPTIDE 2; CHAIN: A, B; SYNONYM: EMAP 2; ENGINEERED: YES	HOMO SAPIENS; HUMAN;	Y.KIM,J.SHIN,R.LI,C.CHEONG,S.KIM	1euj	2000_09_06

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
PDB header	PDB 'HEADER' field
PDB compnd	PDB 'COMPND' field
PDB source	PDB 'SOURCE' field
PDB author	PDB 'AUTHOR' field