EVA: Detailed information for proteins added on: 2000_09_20

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	PDB header	PDB compnd	PDB source	PDB author	id	date
2000_09_20	1f5x	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	SIGNALING PROTEIN	MOLECULE: RHO-GEF VAV; CHAIN: A; FRAGMENT: DBL HOMOLOGY DOMAIN; ENGINEERED: YES	MUS MUSCULUS; MOUSE;	B.AGHAZADEH,M.K.ROSEN,W.E.LOWRY,X.Y.HUANG	1f5x	2000_09_20
2000_09_20	1d1n	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	GENE REGULATION	MOLECULE: INITIATION FACTOR 2; CHAIN: A; FRAGMENT: C2 TERMINAL DOMAIN; ENGINEERED: YES	BACILLUS STEAROTHERMOPHILLUS; BACTERIA;	S.MEUNIER,S.SPURIO,M.CZISCH,R.WECHSELBERGER,M.GUEUNNEUGUES	1d1n	2000_09_20
2000_09_20	1d1h	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TOXIN	MOLECULE: HANATOXIN TYPE 1; CHAIN: A	GRAMMOSTOLA SPATULATA; TARANTULA; TISSUE: VENOM	H.TAKAHASHI,J.I.KIM,K.SATO,K.J.SWARTZ,I.SHIMADA	1d1h	2000_09_20
2000_09_20	1dlw	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXYGEN STORAGE/TRANSPORT	MOLECULE: HEMOGLOBIN; CHAIN: A; ENGINEERED: YES	PARAMECIUM CAUDATUM; CILIATE;	A.PESCE,M.COUTURE,M.GUERTIN,S.DEWILDE,L.MOENS,M.BOLOGNESI	1dlw	2000_09_20
2000_09_20	1dl0	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TOXIN	MOLECULE: J-ATRACOTOXIN-HV1C; CHAIN: A; ENGINEERED: YES	SYNTHETIC: YES; OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN THE SPIDER, HADRONYCHE VERSUTA. THE PEPTIDE WAS CHEMICALLY SYNTHESIZED FOR NMR STUDIES USING STANDARD T-BOC CHEMISTRY AND OXIDIZED/FOLDED IN A GLUTATHIONE REDOX BUFFER.	X.H.WANG,G.F.KING	1dl0	2000_09_20
2000_09_20	1ekr	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSLATION	MOLECULE: MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN C; CHAIN: A; ENGINEERED: YES; MUTATION: YES	ESCHERICHIA COLI; BACTERIA;	H.SCHINDELIN,M.T.W.LIU,M.M.WUEBBENS,K.V.RAJAGOPALAN	1ekr	2000_09_20
2000_09_20	1ezj	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	VIRUS/VIRAL PROTEIN	MOLECULE: NUCLEOCAPSID PHOSPHOPROTEIN; CHAIN: A; FRAGMENT: MULTIMERIZATION DOMAIN (320-433); SYNONYM: RNA POLYMERASE ALPHA SUBUNIT; EC: 2.7.7.48; ENGINEERED: YES	SENDAI VIRUS; VIRUS; STRAIN: HARRIS;	N.TARBOURIECH,J.CURRAN,R.W.H.RUIGROK,W.P.BURMEISTER	1ezj	2000_09_20
2000_09_20	1esm	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	MOLECULE: PANTOTHENATE KINASE; CHAIN: A, B, C, D; SYNONYM: PANK; EC: 2.7.1.33; ENGINEERED: YES	ESCHERICHA COLI; BACTERIA;	M.YUN,C.G.PARK,J.Y.KIM,C.O.ROCK,S.JACKOWSKI,H.W.PARK	1esm	2000_09_20

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
PDB header	PDB 'HEADER' field
PDB compnd	PDB 'COMPND' field
PDB source	PDB 'SOURCE' field
PDB author	PDB 'AUTHOR' field