EVA: Detailed information for proteins added on: 2000_09_27

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	PDB header	PDB compnd	PDB source	PDB author	id	date
2000_09_27	1fjf	C-K-I	pdb_ascii	dssp	fasta	psi_ascii	psi_html	RIBOSOME	MOLECULE: 16S RIBOSOMAL RNA; CHAIN: A; MOLECULE: FRAGMENT OF MESSENGER RNA; CHAIN: X; MOLECULE: 30S RIBOSOMAL PROTEIN S2; CHAIN: B; MOLECULE: 30S RIBOSOMAL PROTEIN S3; CHAIN: C; MOLECULE: 30S RIBOSOMAL PROTEIN S4; CHAIN: D; MOLECULE: 30S RIBOSOMAL PROTEIN S5; CHAIN: E; MOLECULE: 30S RIBOSOMAL PROTEIN S6; CHAIN: F; MOLECULE: 30S RIBOSOMAL PROTEIN S7; CHAIN: G; MOLECULE: 30S RIBOSOMAL PROTEIN S8; CHAIN: H; MOLECULE: 30S RIBOSOMAL PROTEIN S9; CHAIN: I; MOLECULE: 30S RIBOSOMAL PROTEIN S10; CHAIN: J; MOLECULE: 30S RIBOSOMAL PROTEIN S11; CHAIN: K; MOLECULE: 30S RIBOSOMAL PROTEIN S12; CHAIN: L; MOLECULE: 30S RIBOSOMAL PROTEIN S13; CHAIN: M; MOLECULE: 30S RIBOSOMAL PROTEIN S14; CHAIN: N; MOLECULE: 30S RIBOSOMAL PROTEIN S15; CHAIN: O; MOLECULE: 30S RIBOSOMAL PROTEIN S16; CHAIN: P; MOLECULE: 30S RIBOSOMAL PROTEIN S17; CHAIN: Q; MOLECULE: 30S RIBOSOMAL PROTEIN S18; CHAIN: R; MOLECULE: 30S RIBOSOMAL PROTEIN S19; CHAIN: S; MOLECULE: 30S RIBOSOMAL PROTEIN S20; CHAIN: T; MOLECULE: 30S RIBOSOMAL PROTEIN THX; CHAIN: V	THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA	B.T.WIMBERLY,D.E.BRODERSEN,W.M.CLEMONS JR.,R.MORGAN-WARREN, A.P.CARTER,C.VONRHEIN,T.HARTSCH,V.RAMAKRISHNAN	1fjf	2000_09_27
2000_09_27	1d2o	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	STRUCTURAL PROTEIN	MOLECULE: COLLAGEN ADHESIN; CHAIN: A, B; FRAGMENT: SINGLE B REPEAT UNIT; SYNONYM: CNA; ENGINEERED: YES	STAPHYLOCOCCUS AUREUS; BACTERIA;	C.C.S.DEIVANAYAGAM,R.L.RICH,M.HOOK,S.V.L.NARAYANA	1d2o	2000_09_27
2000_09_27	1fjf	B-J-N	pdb_ascii	dssp	fasta	psi_ascii	psi_html	RIBOSOME	MOLECULE: 16S RIBOSOMAL RNA; CHAIN: A; MOLECULE: FRAGMENT OF MESSENGER RNA; CHAIN: X; MOLECULE: 30S RIBOSOMAL PROTEIN S2; CHAIN: B; MOLECULE: 30S RIBOSOMAL PROTEIN S3; CHAIN: C; MOLECULE: 30S RIBOSOMAL PROTEIN S4; CHAIN: D; MOLECULE: 30S RIBOSOMAL PROTEIN S5; CHAIN: E; MOLECULE: 30S RIBOSOMAL PROTEIN S6; CHAIN: F; MOLECULE: 30S RIBOSOMAL PROTEIN S7; CHAIN: G; MOLECULE: 30S RIBOSOMAL PROTEIN S8; CHAIN: H; MOLECULE: 30S RIBOSOMAL PROTEIN S9; CHAIN: I; MOLECULE: 30S RIBOSOMAL PROTEIN S10; CHAIN: J; MOLECULE: 30S RIBOSOMAL PROTEIN S11; CHAIN: K; MOLECULE: 30S RIBOSOMAL PROTEIN S12; CHAIN: L; MOLECULE: 30S RIBOSOMAL PROTEIN S13; CHAIN: M; MOLECULE: 30S RIBOSOMAL PROTEIN S14; CHAIN: N; MOLECULE: 30S RIBOSOMAL PROTEIN S15; CHAIN: O; MOLECULE: 30S RIBOSOMAL PROTEIN S16; CHAIN: P; MOLECULE: 30S RIBOSOMAL PROTEIN S17; CHAIN: Q; MOLECULE: 30S RIBOSOMAL PROTEIN S18; CHAIN: R; MOLECULE: 30S RIBOSOMAL PROTEIN S19; CHAIN: S; MOLECULE: 30S RIBOSOMAL PROTEIN S20; CHAIN: T; MOLECULE: 30S RIBOSOMAL PROTEIN THX; CHAIN: V	THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA	B.T.WIMBERLY,D.E.BRODERSEN,W.M.CLEMONS JR.,R.MORGAN-WARREN, A.P.CARTER,C.VONRHEIN,T.HARTSCH,V.RAMAKRISHNAN	1fjf	2000_09_27

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
PDB header	PDB 'HEADER' field
PDB compnd	PDB 'COMPND' field
PDB source	PDB 'SOURCE' field
PDB author	PDB 'AUTHOR' field